ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf37b22 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os12g30510:12012.t02758:unspliced-genomic calcitonin gene-related peptide-receptor component protein,| putative, expressed Length = 2192 Score = 109 bits (233), Expect(3) = 4e-55 Identities = 41/54 (75%), Positives = 48/54 (88%) Frame = +3 / +2 Query: 411 KVYEYLLKTPACNQTRESVTEFANRCEGFKLTDADKQNIINWRPASAADVYAMV 572 +VYEYLLKTPACNQTRES+ EF RCE FKLT+ADK N+INWRP+SAAD YA++ Sbjct: 836 QVYEYLLKTPACNQTRESINEFVTRCESFKLTNADKLNVINWRPSSAADAYAVL 997 Score = 88.1 bits (186), Expect(3) = 4e-55 Identities = 36/40 (90%), Positives = 37/40 (92%) Frame = +3 / +2 Query: 297 EKANAGHLTNFEVLDFLRTRGAKIDPMGCLGAVAASECKV 416 EK NAG LTNFEVLDFLR+RGAK DPMGCLGAVAASECKV Sbjct: 611 EKTNAGFLTNFEVLDFLRSRGAKTDPMGCLGAVAASECKV 730 Score = 63.8 bits (133), Expect(3) = 4e-55 Identities = 24/42 (57%), Positives = 29/42 (69%) Frame = +3 / +2 Query: 567 MVEECGKRFCKDERGMPQDEEDRANELVALVDEVFPAPPANP 692 M+EECGKRF KDERG +E++R E + LV E FP PP P Sbjct: 1739 MIEECGKRFSKDERGEACNEDERVEEFLELVKEAFPPPPPKP 1864 Score = 84.9 bits (179), Expect(3) = 6e-39 Identities = 39/53 (73%), Positives = 43/53 (81%) Frame = -1 / -2 Query: 569 HRINISC*GWPPIDNVLLVSVSKLEALTSVCKFSN*FPCLVASRSF*EVLIYL 411 +RI IS GW PID + LVS+ KLEALTS KF N*FPCLVASRSF*+VLIYL Sbjct: 994 YRIGISSRGWSPIDYI*LVSICKLEALTSCHKFVN*FPCLVASRSF*KVLIYL 836 Score = 69.8 bits (146), Expect(3) = 6e-39 Identities = 29/35 (82%), Positives = 30/35 (85%) Frame = -2 / -3 Query: 415 TLHSDAATAPKHPMGSIFAPLVRKKSRTSKLVRCP 311 TLHSDAATAPKHPMGS+ APL RKKS TSK VR P Sbjct: 729 TLHSDAATAPKHPMGSVLAPLDRKKSSTSKFVRNP 625 Score = 52.4 bits (108), Expect(3) = 6e-39 Identities = 21/54 (38%), Positives = 32/54 (59%) Frame = -1 / -2 Query: 728 SDVLHIHIYFILWVSRWCWENLVYKSHKLIGTVLFILRHSSLILAKSFPTLLYH 567 S V+ +Y LW+ RW W++L++ + + + +FI S LIL KSF L YH Sbjct: 1900 STVIPRSLYHCLWLWRWWWKSLLH*LQEFLNSFIFIACFSPLILRKSFTALFYH 1739 Score = 80.8 bits (170), Expect(2) = 6e-28 Identities = 36/45 (80%), Positives = 37/45 (82%) Frame = -2 / -3 Query: 547 EAGLQLIMFCLSASVSLKPSHLFANSVTDSLVWLQAGVFRRYSYT 413 E GLQLI F LSA VSLK SHL NS+ DSLVWLQAGVFRRYSYT Sbjct: 972 EDGLQLITFSLSAFVSLKLSHLVTNSLIDSLVWLQAGVFRRYSYT 838 Score = 63.8 bits (133), Expect(2) = 6e-28 Identities = 28/40 (70%), Positives = 32/40 (80%) Frame = -1 / -2 Query: 416 YLTL*CSNSPQTSHGINFCTSSP*EVENFEVGEMSCICFL 297 +LTL*CSNS QTSHGI F TS *EV++F+V SCICFL Sbjct: 730 HLTL*CSNSTQTSHGIGFSTSRS*EVKHFKVC*KSCICFL 611 Score = 78.5 bits (165), Expect(2) = 1e-26 Identities = 36/51 (70%), Positives = 39/51 (76%) Frame = -3 / -1 Query: 564 HKHQLLRLASN**CFACQRQ*A*SPHICLQIQ*LIPLSGCKQEFLGGTHIP 412 H+HQ R+ SN* ACQ *A*S HI QI+*LIPLSGCKQEFL GTHIP Sbjct: 989 HRHQQPRMVSN*LHLACQHL*A*SSHILSQIR*LIPLSGCKQEFLEGTHIP 837 Score = 62.0 bits (129), Expect(2) = 1e-26 Identities = 25/36 (69%), Positives = 30/36 (83%) Frame = -3 / -1 Query: 414 PYTLMQQQPPNIPWDQFLHL*SVRSRELRSW*DVLH 307 PYTLMQQQ PNIPWD+F HL* VRS+ L+S ++LH Sbjct: 728 PYTLMQQQHPNIPWDRF*HL*IVRSQALQSLLEILH 621 Score = 66.1 bits (138), Expect(3) = 2e-23 Identities = 32/47 (68%), Positives = 34/47 (72%) Frame = +2 / +1 Query: 425 PPKNSCLQPDKGISY*ICKQM*GLQAY*R*QAKHYQLEASLSS*CLC 565 P KNSCLQPDKGI+ IC +M* LQAY *QAK QLE L *CLC Sbjct: 850 PSKNSCLQPDKGIN*RICDKM*ELQAYKC*QAKCNQLETILGC*CLC 990 Score = 53.8 bits (111), Expect(3) = 2e-23 Identities = 24/34 (70%), Positives = 24/34 (70%) Frame = +1 / +3 Query: 313 DISPTSKFSTSYGLEVQKLIPWDVWGLLLHQSVR 414 D T K TSY LEV K IPWDVW LLLHQSVR Sbjct: 627 DF*QTLKCLTSYDLEVLKPIPWDVWVLLLHQSVR 728 Score = 34.1 bits (68), Expect(3) = 2e-23 Identities = 19/44 (43%), Positives = 22/44 (50%) Frame = +1 / +3 Query: 565 RW*RSVGKDFARMSEECRRMKRTVPMSLWLL*TRFSQHHLLTQR 696 R *+S DF RMS E MK + W * R HHL +QR Sbjct: 1737 R**KSAVNDFRRMSGEKHAMKMNELRNSWS**RRLFHHHLQSQR 1868 Score = 51.0 bits (105), Expect(2) = 9e-12 Identities = 24/28 (85%), Positives = 24/28 (85%) Frame = +1 / +3 Query: 412 RYMSTS*KLLLATRQGNQLLNLQTDVRA 495 RYMST *KLLLATRQGNQL NL DVRA Sbjct: 837 RYMSTF*KLLLATRQGNQLTNL*QDVRA 920 Score = 43.2 bits (88), Expect(2) = 9e-12 Identities = 20/30 (66%), Positives = 24/30 (80%) Frame = +2 / +1 Query: 296 RESKCRTSHQLRSSRLLTD*RCKN*SHGMF 385 RE+KCR S++L S+ LLT *RC N SHGMF Sbjct: 610 RENKCRISNKL*SA*LLTI*RC*NRSHGMF 699
>LOC_Os04g33650:12004.t03041:unspliced-genomic hypothetical protein| Length = 3077 Score = 34.1 bits (68), Expect(2) = 0.52 Identities = 18/59 (30%), Positives = 22/59 (37%) Frame = -3 / -2 Query: 744 PESNPFRRPSYPHLLHPLG*QVVLGKPRLQEPQAHWHGPLHPAAFLAHPCKIFSHTPLP 568 P RRP+ H P G + R P+ H HGP H A L + P P Sbjct: 574 PPPRHHRRPAPSHAAPPAGPEPASPHRRRPPPRHHLHGPPHATAILPRRRRHRGRFPTP 398 Score = 23.5 bits (45), Expect(2) = 0.52 Identities = 8/12 (66%), Positives = 8/12 (66%) Frame = -3 / -2 Query: 246 CSIWAGLDRGGA 211 CSIW RGGA Sbjct: 220 CSIWGVFGRGGA 185
>LOC_Os10g41460:12010.t03382:unspliced-genomic expressed protein| Length = 1554 Score = 27.2 bits (53), Expect(2) = 1.2 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +3 / +2 Query: 171 PPDYTERDTRRSNSRRPGPVQPKYCIDLST 260 PP R RR+ RRP P P+ C +T Sbjct: 815 PPPSRWRRARRTPRRRPWPRWPRRCAPSAT 904 Score = 24.4 bits (47), Expect(2) = 1.2 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = +1 / +2 Query: 31 PSPALFRSHNPAPP 72 P+P+L+RS N PP Sbjct: 782 PAPSLWRSENNPPP 823
>LOC_Os05g30710:12005.t02670:unspliced-genomic pentatricopeptide repeat protein PPR868-14, putative, expressed| Length = 2465 Score = 34.1 bits (68), Expect = 1.5 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -3 / -3 Query: 666 PRLQEPQAHWHGPLHPAAFLAHPCKIFSHTPLPSHKHQLLRLASN 532 P P H HG H L HP +HT L S + + L AS+ Sbjct: 909 PTCTRPSPHTHGAAHRQRHLQHPQPQIAHTRLRSRQARTLPRASS 775
>LOC_Os04g19590:12004.t01699:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 10512 Score = 33.6 bits (67), Expect = 2.1 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = +2 / +3 Query: 11 DGQVIANLVQPSFVRTTRRHPSAPAR 88 D QVIA+LV+PSFV R P P R Sbjct: 2397 DRQVIADLVRPSFVAVGSRKPLLPRR 2474 Score = 32.7 bits (65), Expect = 4.0 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -3 / -3 Query: 87 RAGAEGWRRVVRTKEGWTRLAITWPS 10 R G G+R TKEG TR A+TW S Sbjct: 2473 RRGRSGFRLPTATKEGRTRSAMTWRS 2396
>LOC_Os03g31026:12003.t005774:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 3714 Score = 33.6 bits (67), Expect = 2.1 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = -3 / +3 Query: 876 PLKLIGQTVMSQTRWPYATIHRELLCQDMHADKLQANPTICILHPESNPFRRPS 715 PL ++ +V+ +T T L+ Q H + +P +CIL P S RP+ Sbjct: 471 PLNVVAPSVIIRTSAAVVTAISILVVQGFHQCRCPVSPWLCILPPASQLRHRPA 632
>LOC_Os04g45834:12004.t04115:unspliced-genomic expressed protein| Length = 7245 Score = 27.2 bits (53), Expect(2) = 2.6 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +1 / +3 Query: 7 PRWPGNC*PSPALFRSHNPAPPFSSGSQ 90 PRWP + PSP + AP S SQ Sbjct: 5793 PRWPSSQLPSPVARSQRHAAPSRSLHSQ 5876 Score = 23.1 bits (44), Expect(2) = 2.6 Identities = 10/28 (35%), Positives = 14/28 (50%) Frame = +3 / +3 Query: 144 RSVHNQVAAPPDYTERDTRRSNSRRPGP 227 RS+H+Q P D+ + RRP P Sbjct: 5859 RSLHSQSQPPRSEDVVDSAPATGRRPPP 5942
>LOC_Os08g40580:12008.t03788:unspliced-genomic methylase, putative, expressed| Length = 2995 Score = 33.1 bits (66), Expect = 2.9 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = -3 / -3 Query: 765 PTICILHPESNPFRRPSYPHLLHPLG*QVVLGKPRLQEP 649 P C P + P R P+ P LLHPL PR+ P Sbjct: 167 PPSCTARPSTTPPRTPAPPCLLHPLPLPSSSAPPRIWPP 51
>LOC_Os04g12950:12004.t01116:unspliced-genomic indole-3-acetate beta-glucosyltransferase, putative| Length = 13600 Score = 33.1 bits (66), Expect = 2.9 Identities = 17/54 (31%), Positives = 25/54 (46%) Frame = -3 / +2 Query: 876 PLKLIGQTVMSQTRWPYATIHRELLCQDMHADKLQANPTICILHPESNPFRRPS 715 PL +V+ +T T L+ Q H + +P +CIL P S RRP+ Sbjct: 12209 PLNAAAPSVIIRTSAAVVTAISILVVQGFHQCRYPVSPWLCILPPASQLRRRPA 12370
>LOC_Os01g36890:12001.t03238:unspliced-genomic spliceosome RNA helicase BAT1, putative, expressed| Length = 6284 Score = 33.1 bits (66), Expect = 2.9 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 / -3 Query: 219 GGANSTDECLVLCNQGERRPDYAPSE 142 G +STD C+ LC RRP P E Sbjct: 2538 GSHSSTDPCVFLCEHHHRRPQLLPQE 2461
>LOC_Os01g13540:12001.t01216:unspliced-genomic NIN-like protein 1, putative, expressed| Length = 5579 Score = 33.1 bits (66), Expect = 2.9 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = -1 / +2 Query: 689 VSRWCWENLVYKSHKLIGTVL 627 +S WCW+ L++K +LIG +L Sbjct: 5480 LSPWCWKILMFKLQRLIGVIL 5542
>LOC_Os06g31730:12006.t02872:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6585 Score = 25.8 bits (50), Expect(2) = 3.6 Identities = 9/31 (29%), Positives = 17/31 (54%) Frame = -3 / +1 Query: 837 RWPYATIHRELLCQDMHADKLQANPTICILH 745 R+P +H L +H D ++++ C+LH Sbjct: 4219 RYPEDRVHHALWTV*IHGDVVRSDQCSCLLH 4311 Score = 24.0 bits (46), Expect(2) = 3.6 Identities = 6/8 (75%), Positives = 7/8 (87%) Frame = -1 / +3 Query: 689 VSRWCWEN 666 +S WCWEN Sbjct: 4416 ISVWCWEN 4439
>LOC_Os12g39540:12012.t03633:unspliced-genomic transposon protein, putative, Ac/Ds sub-class| Length = 4547 Score = 32.7 bits (65), Expect = 4.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 / -1 Query: 574 RSVGKDFARMSEECRRMKRTVPMS 645 RS D+ R +ECRR +RT+PM+ Sbjct: 1364 RSQSMDYRRFYQECRR*RRTLPMT 1293
>LOC_Os09g26680:12009.t02347:unspliced-genomic transposon protein, putative, Ac/Ds sub-class| Length = 7597 Score = 32.7 bits (65), Expect = 4.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 / -2 Query: 574 RSVGKDFARMSEECRRMKRTVPMS 645 RS D+ R +ECRR +RT+PM+ Sbjct: 1398 RSQSMDYRRFYQECRR*RRTLPMT 1327
>LOC_Os07g47610:12007.t04395:unspliced-genomic transposon protein, putative, Ac/Ds sub-class| Length = 5154 Score = 32.7 bits (65), Expect = 4.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 / -3 Query: 574 RSVGKDFARMSEECRRMKRTVPMS 645 RS D+ R +ECRR +RT+PM+ Sbjct: 1378 RSQSMDYRRFYQECRR*RRTLPMT 1307
>LOC_Os07g22270:12007.t01931:unspliced-genomic transposon protein, putative, Ac/Ds sub-class| Length = 4547 Score = 32.7 bits (65), Expect = 4.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 / -1 Query: 574 RSVGKDFARMSEECRRMKRTVPMS 645 RS D+ R +ECRR +RT+PM+ Sbjct: 1364 RSQSMDYRRFYQECRR*RRTLPMT 1293
>LOC_Os05g09570:12005.t00833:unspliced-genomic transposon protein, putative, Ac/Ds sub-class| Length = 4424 Score = 32.7 bits (65), Expect = 4.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 / -2 Query: 574 RSVGKDFARMSEECRRMKRTVPMS 645 RS D+ R +ECRR +RT+PM+ Sbjct: 1378 RSQSMDYRRFYQECRR*RRTLPMT 1307
>LOC_Os02g56290:12002.t05202:unspliced-genomic conserved hypothetical protein| Length = 4485 Score = 32.7 bits (65), Expect = 4.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 / -3 Query: 574 RSVGKDFARMSEECRRMKRTVPMS 645 RS D+ R +ECRR +RT+PM+ Sbjct: 1546 RSQSMDYRRFYQECRR*RRTLPMT 1475
>LOC_Os02g55470:12002.t05123:unspliced-genomic alpha-1,6-mannosyl-glycoprotein| 2-beta-N-acetylglucosaminyltransferase, putative, expressed Length = 2169 Score = 32.7 bits (65), Expect = 4.0 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = +3 / +2 Query: 144 RSVHNQVAAPPDYTERDTRRSNSRRPGPVQPKYCIDLSTLLPCTAAATMKIEKA 305 RS +A + R TRR++SRRP P P T P + A + A Sbjct: 455 RSCRPSPSARSSRSSRPTRRTSSRRPSPASPPVTARARTRRPRSTARATRTSTA 616
>LOC_Os01g49010:12001.t04343:unspliced-genomic origin recognition complex subunit 4, putative, expressed| Length = 4384 Score = 32.7 bits (65), Expect = 4.0 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 / +2 Query: 786 HACPGITALCGLWHKAILFETSQFDL*ASMAVETLFVL 899 H P CGL HK I+F +FDL A + T ++ Sbjct: 1661 HLYPLFCRECGLAHKTIIFVLEEFDLFAQVETNTCILV 1774
>LOC_Os01g43370:12001.t03853:unspliced-genomic expressed protein| Length = 4886 Score = 32.7 bits (65), Expect = 4.0 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -3 / -1 Query: 660 LQEPQAHWHGPLHPAAFLAHPCKIFSHTPLPSHKHQL 550 +Q AH P + PC +F HTP P +KH+L Sbjct: 3971 VQPEIAHLFPPP*ATQY*VPPCTLFGHTPPP*NKHRL 3861
>LOC_Os01g14260:12001.t01284:unspliced-genomic transposon protein, putative, Ac/Ds sub-class| Length = 4116 Score = 32.7 bits (65), Expect = 4.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 / -3 Query: 574 RSVGKDFARMSEECRRMKRTVPMS 645 RS D+ R +ECRR +RT+PM+ Sbjct: 1378 RSQSMDYRRFYQECRR*RRTLPMT 1307
>LOC_Os07g22830:12007.t01985:unspliced-genomic conserved hypothetical protein| Length = 684 Score = 29.5 bits (58), Expect(2) = 4.7 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -3 / -2 Query: 753 ILHPESNPFRRPSYPHLLH 697 +LHP + P R + PHLLH Sbjct: 617 LLHPRARPDRGTASPHLLH 561 Score = 22.6 bits (43), Expect(2) = 4.7 Identities = 7/18 (38%), Positives = 11/18 (61%) Frame = -3 / -1 Query: 606 AHPCKIFSHTPLPSHKHQ 553 A PC+ + TP P + H+ Sbjct: 252 ASPCRAPASTPFPPNHHR 199
>LOC_Os09g02700:12009.t00169:unspliced-genomic polyadenylate-binding protein 2, putative, expressed| Length = 5156 Score = 27.6 bits (54), Expect(2) = 4.8 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 / -3 Query: 394 TAPKHPMGSIFAPLVRKKSRTS 329 T P + GSIF+ R KSRTS Sbjct: 2385 THPAYSSGSIFSRFKRNKSRTS 2320 Score = 27.2 bits (53), Expect(2) = 4.8 Identities = 10/33 (30%), Positives = 15/33 (45%) Frame = -3 / -2 Query: 642 HWHGPLHPAAFLAHPCKIFSHTPLPSHKHQLLR 544 HWHG LH + + L +H+H +R Sbjct: 4081 HWHGLLHSTSTSTPTSRTLRLLSLLNHRHDKVR 3983
>LOC_Os02g46640:12002.t04251:unspliced-genomic chaperone protein dnaJ, putative, expressed| Length = 2874 Score = 25.8 bits (50), Expect(2) = 5.1 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +1 / +2 Query: 31 PSPALFRSHNPAPPFSS 81 P+PA RS +P+PP S Sbjct: 74 PTPAASRSASPSPPIDS 124 Score = 23.5 bits (45), Expect(2) = 5.1 Identities = 9/18 (50%), Positives = 10/18 (55%) Frame = +3 / +2 Query: 165 AAPPDYTERDTRRSNSRR 218 A PP DTR+ N RR Sbjct: 170 AGPPPTRAADTRKGNRRR 223
>LOC_Os12g08060:12012.t00688:unspliced-genomic universal stress protein family protein| Length = 3987 Score = 30.9 bits (61), Expect(2) = 5.1 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +3 / -1 Query: 480 NRCEGFKLTDADKQNIINWRPASAADVYAMVEECGKRF 593 +R E F D++ ++W A+V E+CG+RF Sbjct: 360 DRAERFSDQDSEYVWAMSWNLVEIAEVMVRAEQCGERF 247 Score = 23.5 bits (45), Expect(2) = 5.1 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +3 / -2 Query: 240 YCIDLSTLLPCTAAA 284 YC+DL+ + P T +A Sbjct: 1148 YCVDLAAMAPDTGSA 1104
>LOC_Os11g46980:12011.t04173:unspliced-genomic receptor-like protein kinase precursor, putative| Length = 5028 Score = 32.2 bits (64), Expect = 5.4 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +1 / +2 Query: 13 WPGNC*PSPALFRSHNPAPPFSSGS 87 W P+P LF S +P+PPF G+ Sbjct: 4322 WYPTTNPNPGLFSSRSPSPPFKMGT 4396
>LOC_Os08g13000:12008.t01178:unspliced-genomic speckle-type POZ protein, putative| Length = 1098 Score = 32.2 bits (64), Expect = 5.4 Identities = 14/37 (37%), Positives = 15/37 (40%) Frame = -3 / +3 Query: 663 RLQEPQAHWHGPLHPAAFLAHPCKIFSHTPLPSHKHQ 553 RLQ Q H LHP L H PLP H+ Sbjct: 84 RLQPQQGHRRRDLHPVGHLRRRRPRLGHPPLPRRSHR 194
>LOC_Os06g27570:12006.t02462:unspliced-genomic conserved hypothetical protein| Length = 636 Score = 32.2 bits (64), Expect = 5.4 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +1 / -3 Query: 4 RPRWPGNC*PSPALFRSHNPAPP 72 RP+ PG PSPA F H P P Sbjct: 616 RPQSPGTAAPSPATFHGHRPCFP 548
>LOC_Os02g49326:12002.t04517:unspliced-genomic ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit| N-methyltransferase I, putative, expressed Length = 4433 Score = 32.2 bits (64), Expect = 5.4 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -3 / -1 Query: 702 LHPLG*QVVLGKPRLQEPQAHWHGPL 625 +HPL Q +LG+PR+ EP HG L Sbjct: 338 VHPLYPQPLLGEPRIGEPPLQRHGAL 261
>LOC_Os01g47900:12001.t04236:unspliced-genomic S-locus-like receptor protein kinase, putative, expressed| Length = 2801 Score = 32.2 bits (64), Expect = 5.4 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +2 / -3 Query: 158 SGRRSP*LHRTRHSSVEFAPPRSSPAQILHRSIYFAPVHGSGNDEDRESKCRTS 319 SG S + +RHS A P + P+ IL+RS++ + V D ++CR+S Sbjct: 2022 SGFTSQWMTHSRHSWWR*ARPLAVPSAILYRSLHASVVALPPLPSDASNRCRSS 1861
>LOC_Os04g16870:12004.t01442:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 1251 Score = 29.5 bits (58), Expect(2) = 6.0 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -3 / -3 Query: 753 ILHPESNPFRRPSYPHLLH 697 +LHP + P R + PHLLH Sbjct: 649 LLHPRARPDRGTASPHLLH 593 Score = 23.1 bits (44), Expect(2) = 6.0 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = -3 / -1 Query: 618 AAFLAHPCKIFSHTPLPSHKHQ 553 A A PC+ + TP P + H+ Sbjct: 297 AVGFASPCRAPASTPFPPNHHR 232
>LOC_Os06g43930:12006.t04083:unspliced-genomic lysosomal Pro-X carboxypeptidase precursor, putative, expressed| Length = 5517 Score = 29.5 bits (58), Expect(2) = 6.8 Identities = 7/21 (33%), Positives = 15/21 (71%) Frame = -1 / +3 Query: 734 TLSDVLHIHIYFILWVSRWCW 672 T+ ++ H++F+L+V+ W W Sbjct: 1464 TIKELSMCHVFFVLFVAAWIW 1526 Score = 24.9 bits (48), Expect(2) = 6.8 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 / +3 Query: 514 SASVSLKPSHLFANSVTDSLVWLQAG 437 S+S L + ++VTDS WL+ G Sbjct: 2235 SSSFDLSVTACSTSTVTDSTCWLEVG 2312
>LOC_Os12g28630:12012.t02573:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1495 Score = 29.5 bits (58), Expect(2) = 7.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -3 / -2 Query: 753 ILHPESNPFRRPSYPHLLH 697 +LHP + P R + PHLLH Sbjct: 750 LLHPRARPDRGTASPHLLH 694 Score = 23.1 bits (44), Expect(2) = 7.1 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = -3 / -1 Query: 618 AAFLAHPCKIFSHTPLPSHKHQ 553 A A PC+ + TP P + H+ Sbjct: 397 AVGFASPCRAPASTPFPPNHHR 332
>LOC_Os11g10090:12011.t00901:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class, expressed| Length = 6739 Score = 31.8 bits (63), Expect = 7.5 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -1 / +1 Query: 788 MQINYRPIRQSVFFTQNQTLSDVLHIHIYFIL 693 ++++ P++ +FF QN + VLH HI F L Sbjct: 487 LEVSMHPLKYLLFF*QN*NIFCVLHCHILFAL 582
>LOC_Os04g13874:12004.t01207:unspliced-genomic ligA, putative| Length = 1623 Score = 29.5 bits (58), Expect(2) = 7.6 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -3 / -2 Query: 753 ILHPESNPFRRPSYPHLLH 697 +LHP + P R + PHLLH Sbjct: 629 LLHPRARPDRGTASPHLLH 573 Score = 23.1 bits (44), Expect(2) = 7.6 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = -3 / -1 Query: 618 AAFLAHPCKIFSHTPLPSHKHQ 553 A A PC+ + TP P + H+ Sbjct: 276 AVGFASPCRAPASTPFPPNHHR 211
>LOC_Os12g03630:12012.t00255:unspliced-genomic expressed protein| Length = 4110 Score = 24.9 bits (48), Expect(3) = 8.5 Identities = 10/25 (40%), Positives = 11/25 (44%) Frame = -1 / -2 Query: 749 FTQNQTLSDVLHIHIYFILWVSRWC 675 F + T V IH Y LW WC Sbjct: 830 FFKKNTCLYVCTIHSYC*LWTITWC 756 Score = 24.0 bits (46), Expect(3) = 8.5 Identities = 8/16 (50%), Positives = 9/16 (56%) Frame = -1 / -3 Query: 920 FFFFFYNKDEKSLNCH 873 F Y KDE +L CH Sbjct: 1654 FLCVIYQKDELTLTCH 1607 Score = 24.0 bits (46), Expect(3) = 8.5 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = -3 / -1 Query: 453 SGCKQEFLGGTHIPYTLMQQQPPNIP 376 +GC E +GG H ++ PP+ P Sbjct: 102 AGCVLEAIGGVHAAAHRGERVPPSRP 25
>LOC_Os11g03380:12011.t00228:unspliced-genomic expressed protein| Length = 4638 Score = 25.8 bits (50), Expect(2) = 8.8 Identities = 8/23 (34%), Positives = 11/23 (47%) Frame = -3 / +3 Query: 669 KPRLQEPQAHWHGPLHPAAFLAH 601 + RLQ P WH P P + + Sbjct: 3294 RTRLQAPSFRWHSPTLPCQMMTN 3362 Score = 22.6 bits (43), Expect(2) = 8.8 Identities = 9/19 (47%), Positives = 9/19 (47%) Frame = -3 / +3 Query: 765 PTICILHPESNPFRRPSYP 709 P ICI N RP YP Sbjct: 3138 PHICISPFSDNGLNRPRYP 3194
>LOC_Os12g29420:12012.t02651:unspliced-genomic conserved hypothetical protein| Length = 1926 Score = 29.5 bits (58), Expect(2) = 8.8 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -3 / -1 Query: 753 ILHPESNPFRRPSYPHLLH 697 +LHP + P R + PHLLH Sbjct: 783 LLHPRARPDRGTASPHLLH 727 Score = 23.1 bits (44), Expect(2) = 8.8 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = -3 / -3 Query: 618 AAFLAHPCKIFSHTPLPSHKHQ 553 A A PC+ + TP P + H+ Sbjct: 430 AVGFASPCRAPASTPFPPNHHR 365
>LOC_Os03g56180:12003.t04878:unspliced-genomic legume lectins beta domain containing protein, expressed| Length = 2035 Score = 24.9 bits (48), Expect(2) = 9.5 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = +3 / +3 Query: 198 RRSNSRRPGPVQPKY 242 RR R PGP+QP++ Sbjct: 345 RRRRGRVPGPLQPRH 389 Score = 23.5 bits (45), Expect(2) = 9.5 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +1 / +2 Query: 7 PRWPGNC*PSPALFRSHNPAPP 72 P PG SP+ R +PAPP Sbjct: 290 PTSPGTASRSPSPRRGTSPAPP 355 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 396,556,061 Number of extensions: 6797852 Number of successful extensions: 29492 Number of sequences better than 10.0: 40 Length of query: 307 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 258 Effective length of database: 52,856,264 Effective search space: 13636916112 Effective search space used: 13636916112 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
