ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf37b22 |
|---|---|
| Clone Library Name | barley_pub |
>Q60482:RPC9_CAVPO DNA-directed RNA polymerase III subunit RPC9 - Cavia porcellus| (Guinea pig) Length = 146 Score = 63.5 bits (153), Expect = 1e-09 Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 6/138 (4%) Frame = +3 Query: 288 MKIEKANAGHLTNFEVLDFL------RTRGAKIDPMGCLGAVAASECKVYEYLLKTPACN 449 M+++ AN+ L+N+EV L R K+ + + +YL KTP + Sbjct: 1 MEVKDANSALLSNYEVFQLLTDLKDQRRESGKMKHSAGQQNLNTITYETLKYLSKTPCRH 60 Query: 450 QTRESVTEFANRCEGFKLTDADKQNIINWRPASAADVYAMVEECGKRFCKDERGMPQDEE 629 Q+ E V EF + KLT A+K ++N RP +A ++ MVEE +RF EE Sbjct: 61 QSPEIVREFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEETEERF---------TEE 111 Query: 630 DRANELVALVDEVFPAPP 683 ++ L+ V + PA P Sbjct: 112 EQIEALLHTVTHILPAEP 129
>Q8VHM6:RPC9_RAT DNA-directed RNA polymerase III subunit RPC9 - Rattus norvegicus| (Rat) Length = 148 Score = 60.1 bits (144), Expect = 1e-08 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 18/148 (12%) Frame = +3 Query: 288 MKIEKANAGHLTNFEVLDFL------RTRGAKIDPMGCLGAVAASECKVYEYLLKTPACN 449 M+++ ANA L+N+EV L R K + A + +Y+ KTP N Sbjct: 1 MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCKN 60 Query: 450 QTRESVTEFANRCEGFKLTDADKQNIINWRPASAADVYAMVEECGKRFCKDE-------- 605 Q+ V EF + KLT A+K ++N RP +A ++ MVEE +R +++ Sbjct: 61 QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEEQIEALLHTV 120 Query: 606 ----RGMPQDEEDRANELVALVDEVFPA 677 P+DE+ ++ A ++E PA Sbjct: 121 TSILPAGPEDEQSKSTSNDAAMEEEEPA 148
>O35427:RPC9_MOUSE DNA-directed RNA polymerase III subunit RPC9 - Mus musculus (Mouse)| Length = 148 Score = 58.5 bits (140), Expect = 4e-08 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 18/148 (12%) Frame = +3 Query: 288 MKIEKANAGHLTNFEVLDFL------RTRGAKIDPMGCLGAVAASECKVYEYLLKTPACN 449 M+++ ANA L+N+EV L R K + A + +Y+ KTP N Sbjct: 1 MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCRN 60 Query: 450 QTRESVTEFANRCEGFKLTDADKQNIINWRPASAADVYAMVEECGKRFCKDE-------- 605 Q+ V EF + KLT A+K ++N RP +A ++ MVEE +R +++ Sbjct: 61 QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEEQIEALLHTV 120 Query: 606 ----RGMPQDEEDRANELVALVDEVFPA 677 P+DE+ ++ ++E PA Sbjct: 121 TSILPAGPEDEQSKSTSNDVAMEEEEPA 148
>O75575:RPC9_HUMAN DNA-directed RNA polymerase III subunit RPC9 - Homo sapiens (Human)| Length = 148 Score = 57.0 bits (136), Expect = 1e-07 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 6/138 (4%) Frame = +3 Query: 288 MKIEKANAGHLTNFEVLDFL------RTRGAKIDPMGCLGAVAASECKVYEYLLKTPACN 449 M+++ AN+ L+N+EV L R K + + +Y+ KTP + Sbjct: 1 MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60 Query: 450 QTRESVTEFANRCEGFKLTDADKQNIINWRPASAADVYAMVEECGKRFCKDERGMPQDEE 629 Q+ E V EF + KLT A+K ++N RP +A ++ MVEE +R E Sbjct: 61 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERL----------TE 110 Query: 630 DRANELVALVDEVFPAPP 683 ++ L+ V + PA P Sbjct: 111 EQIEALLHTVTSILPAEP 128
>P47076:RPC9_YEAST DNA-directed RNA polymerase III subunit RPC9 - Saccharomyces| cerevisiae (Baker's yeast) Length = 161 Score = 41.6 bits (96), Expect = 0.005 Identities = 20/54 (37%), Positives = 29/54 (53%) Frame = +3 Query: 432 KTPACNQTRESVTEFANRCEGFKLTDADKQNIINWRPASAADVYAMVEECGKRF 593 K+ + ES E + FKL A+K I+N PA+ +Y++VEEC RF Sbjct: 92 KSGISKMSDESFAELMTKLNSFKLFKAEKLQIVNQLPANMVHLYSIVEECDARF 145
>P39060:COIA1_HUMAN Collagen alpha-1(XVIII) chain precursor [Contains: Endostatin] - Homo| sapiens (Human) Length = 1754 Score = 32.7 bits (73), Expect = 2.1 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Frame = -3 Query: 765 PTICILHPESNPFRRPSYPH-LLHPLG*QVVLGKP-RLQEPQAHWHGPLHPAAFLAHPCK 592 P + LH +SNP+ R +PH P +L P RL EPQ + P H + P + Sbjct: 1507 PPVVQLH-DSNPYPRREHPHPTARPWRADDILASPPRLPEPQPYPGAPHHSSYVHLRPAR 1565 Query: 591 IFSHTPLPSHKHQ 553 T P+H H+ Sbjct: 1566 ---PTSPPAHSHR 1575
>O07401:HEMH_MYCAV Ferrochelatase - Mycobacterium avium| Length = 335 Score = 31.6 bits (70), Expect = 4.7 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = +2 Query: 212 APPRSSPAQILHRSIYFA--PVHGSGNDEDRESKCRTSHQLRSSRLL 346 A R PA++L + A HG G+ R+S CR H LR RLL Sbjct: 64 AAGRPEPARLLRQPQLGALRRRHGEGHTRQRDSACRGVHHLRLERLL 110
>Q8K3L6:GIMA5_RAT GTPase IMAP family member 5 - Rattus norvegicus (Rat)| Length = 326 Score = 31.2 bits (69), Expect = 6.1 Identities = 12/36 (33%), Positives = 26/36 (72%), Gaps = 1/36 (2%) Frame = +3 Query: 555 DVYAMVEECGKRFCK-DERGMPQDEEDRANELVALV 659 D++ +V+ECG+R+C + + ++++ + EL+ALV Sbjct: 189 DLHRLVQECGRRYCAFNNKASGEEQQGQLAELMALV 224
>Q75CB4:PFA4_ASHGO Palmitoyltransferase PFA4 - Ashbya gossypii (Yeast) (Eremothecium| gossypii) Length = 375 Score = 30.8 bits (68), Expect = 8.0 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 22/108 (20%) Frame = -1 Query: 848 CLKQDGLMPQSTESC---------------YARTCMQINYRPIRQSVFFTQNQTLSDVLH 714 C K + P+ T C + C+ + Y + S+F T +LH Sbjct: 80 CTKCETYKPERTHHCKRCNQCVLVMDHHCPWTMNCLGLQYLAPQHSIFCWIIATTGILLH 139 Query: 713 IHIYFI--LWVSRWCWENLVYKSHKLIGTVL-----FILRHSSLILAK 591 + I WV+R+ NLV K + T+L FIL SL+ + Sbjct: 140 YFVKRIKFTWVNRYATANLVSKQELIFLTILTPLDAFILLTISLLFVR 187 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 162,866,198 Number of extensions: 3485094 Number of successful extensions: 8249 Number of sequences better than 10.0: 9 Number of HSP's gapped: 8245 Number of HSP's successfully gapped: 9 Length of query: 307 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 194 Effective length of database: 69,691,104 Effective search space: 13520074176 Effective search space used: 13520074176 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
