ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf43e13 |
|---|---|
| Clone Library Name | barley_pub |
>P16443:DBP_RAT D site-binding protein - Rattus norvegicus (Rat)| Length = 325 Score = 33.5 bits (75), Expect = 1.6 Identities = 20/52 (38%), Positives = 27/52 (51%) Frame = +2 Query: 89 LPPSPPHSAPIQIQDRTAPARCPSQSPARFGSCRPTPGRYIAALRPVRSSMG 244 LPPSPP P + +PAR P+ SP GSC + R P R+++G Sbjct: 128 LPPSPP--PPGGLSPAPSPARTPAPSPGP-GSCSSSSPRSSPGHAPARATLG 176
>Q60925:DBP_MOUSE D site-binding protein - Mus musculus (Mouse)| Length = 325 Score = 33.5 bits (75), Expect = 1.6 Identities = 20/52 (38%), Positives = 27/52 (51%) Frame = +2 Query: 89 LPPSPPHSAPIQIQDRTAPARCPSQSPARFGSCRPTPGRYIAALRPVRSSMG 244 LPPSPP P + +PAR P+ SP GSC + R P R+++G Sbjct: 128 LPPSPP--PPGGLSPAPSPARTPAPSPGP-GSCSSSSPRSSPGHAPARATLG 176
>P16112:PGCA_HUMAN Aggrecan core protein precursor - Homo sapiens (Human)| Length = 2415 Score = 32.7 bits (73), Expect = 2.8 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = +2 Query: 29 IYSGEKLNFESIRSRPGHR*LPPSPPHSAPIQIQDRTAPARCPSQSPARFGSCRPTPGRY 208 +YSGE+ + + P +P SP + APAR ++ P G+C+ T G Sbjct: 2127 LYSGEETHTVETATSPTDASIPASPEWKRESE-STAAAPARSCAEEPCGAGTCKETEGHV 2185 Query: 209 IAALRP 226 I P Sbjct: 2186 ICLCPP 2191
>Q9JLV1:BAG3_MOUSE BAG family molecular chaperone regulator 3 - Mus musculus (Mouse)| Length = 577 Score = 32.7 bits (73), Expect = 2.8 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = +2 Query: 98 SPPHSAPIQIQDRTAPARCPSQSPARFGSCRPTPGRYIAA 217 SPP + ++++ +AP CPS SPA S P+P + +AA Sbjct: 360 SPPPAEKVEVKVSSAPIPCPSPSPA--PSAVPSPPKNVAA 397
>P21415:ENV_GALV Envelope glycoprotein precursor - Gibbon ape leukemia virus (GALV)| Length = 685 Score = 32.7 bits (73), Expect = 2.8 Identities = 18/77 (23%), Positives = 32/77 (41%) Frame = -1 Query: 699 TSRYEVTSRAATTRNKNVAITKRATPPTILTFPTVLFAEPSNPNMAPARNSSTAMIARTH 520 T R ++T+ A ++ + ++ P T L P L + P P NS+ + Sbjct: 252 TIRLKITNMPAVAVGPDLVLVEQGPPRTSLALPPPLPPREAPPPSLPDSNSTALATSAQT 311 Query: 519 EVMKKTTAAMRLPPLVT 469 ++KT + PP T Sbjct: 312 PTVRKTIVTLNTPPPTT 328
>P06800:CD45_MOUSE Leukocyte common antigen precursor - Mus musculus (Mouse)| Length = 1291 Score = 32.0 bits (71), Expect = 4.7 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Frame = -3 Query: 544 HCYDRKDP*GDEEDHCSDALAPLSYPPCPTTADGHTGKNLRHRRQHGCHHAAWHRRRAPV 365 H ++DP D ++ SY T G+ G+N + +R + R P+ Sbjct: 917 HNMKKRDPPSDPSPREAEYQRLPSYRSWRTQHIGNQGENKKKKRNSNV--VPYDFNRVPL 974 Query: 364 RIELSIVMLVMFQRQENRADDSKDDRQHSEDAGHH-HETFVTHR*SHWTKRSDITAGG 194 + EL M + E +D+S DD SE+ + + +FV S+W I A G Sbjct: 975 KHELE-----MSKESEPESDESSDDDSDSEETSKYINASFVM---SYWKPEMMIAAQG 1024
>O94856:NFASC_HUMAN Neurofascin precursor - Homo sapiens (Human)| Length = 1347 Score = 32.0 bits (71), Expect = 4.8 Identities = 25/101 (24%), Positives = 37/101 (36%) Frame = -1 Query: 696 SRYEVTSRAATTRNKNVAITKRATPPTILTFPTVLFAEPSNPNMAPARNSSTAMIARTHE 517 SRY T A T A+T+ + P PT + P + P +T ++ T Sbjct: 1001 SRYRFTLSARTQVGSGEAVTEESPAPPNEATPTA-----APPTLPPTTVGATGAVSSTDA 1055 Query: 516 VMKKTTAAMRLPPLVTRHAPQQQMATLARICVIDANTAATT 394 T P++ AP +AT + TAA T Sbjct: 1056 TAIAATTEATTVPIIPTVAP-TTIATTTTVATTTTTTAAAT 1095
>Q5KM87:RNA14_CRYNE mRNA 3'-end processing protein RNA14 - Cryptococcus neoformans| (Filobasidiella neoformans) Length = 1064 Score = 31.6 bits (70), Expect = 6.2 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Frame = +2 Query: 71 RPGHR*LPPSPPHSAPIQIQDRTAPARCPSQSPARF---GSCRPTPGRYIAALRPVRS 235 RP +PP P SA +P R +QSP R RP PGRY +L PV++ Sbjct: 902 RPAPEDIPPRRPSSAEFS----RSPKRHRAQSPPRRYPERDDRPPPGRYRDSLPPVKA 955
>Q9H3T3:SEM6B_HUMAN Semaphorin-6B precursor - Homo sapiens (Human)| Length = 888 Score = 31.2 bits (69), Expect = 8.1 Identities = 23/57 (40%), Positives = 27/57 (47%) Frame = +2 Query: 77 GHR*LPPSPPHSAPIQIQDRTAPARCPSQSPARFGSCRPTPGRYIAALRPVRSSMGN 247 GH LP S S + APAR P Q PA PTP + A RP R+S G+ Sbjct: 738 GHPLLPASASSSLLL-----LAPARAPEQPPA---PGEPTPDGRLYAARPGRASHGD 786
>Q81ZZ7:GLNE_NITEU Glutamate-ammonia-ligase adenylyltransferase - Nitrosomonas europaea| Length = 929 Score = 31.2 bits (69), Expect = 8.1 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Frame = +2 Query: 566 MLGFEGSAKRTVGNVRIVGGVALFVIATFLFLVVAA---LDVTSYRLVRKKDHYQAYVGS 736 +LG+ + GN+ G +AL +A L L A +T+YR +R+ H G+ Sbjct: 832 VLGYAHRYPQLTGNI---GNIALLKLAGELGLTSAGKATAALTAYRELRRTQHQLRLSGT 888 Query: 737 NPPMVPATSKDGPNAFAPAPHNQV 808 P A S+D FA +N + Sbjct: 889 PEPAGTALSRDVSQKFARVANNHL 912
>Q10586:DBP_HUMAN D site-binding protein - Homo sapiens (Human)| Length = 325 Score = 31.2 bits (69), Expect = 8.1 Identities = 20/52 (38%), Positives = 25/52 (48%) Frame = +2 Query: 89 LPPSPPHSAPIQIQDRTAPARCPSQSPARFGSCRPTPGRYIAALRPVRSSMG 244 LPPSPP P +PAR P+ SP GSC R P R+++G Sbjct: 128 LPPSPP--PPGGPSPEPSPARTPAPSPGP-GSCGSASPRSSPGHAPARAALG 176 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 216,700,767 Number of extensions: 5165429 Number of successful extensions: 14390 Number of sequences better than 10.0: 11 Number of HSP's gapped: 14355 Number of HSP's successfully gapped: 11 Length of query: 373 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 258 Effective length of database: 69,142,514 Effective search space: 17838768612 Effective search space used: 17838768612 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
