>Q923G2:RPAB3_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC3 - Mus|
           musculus (Mouse)
          Length = 150
 Score =  137 bits (345), Expect = 6e-32
 Identities = 71/149 (47%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
 Frame = +2

Query: 125 MAEHLFEDIFHVTRIDPDGKKFDRVNRIEARSEQLDMYMQLDIATDVYPMHMGDKFTMVL 304
           MA  LFEDIF V  IDP+GKKFDRV+R+   SE   M + LD+   +YP+ +GDKF +V+
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 305 APTLNLDGTPDTGYYTQA-GRKTLADKYDYVMHGKLYKISEDGGSKDKTAPKVEIYASFG 481
           A TL  DGT D G Y     R + AD+++YVM+GK+Y+I  D  S +  A ++  Y S+G
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTE-AATRLSAYVSYG 119

Query: 482 GLLMLLKGDASSAANLELDQRLFLLIRKV 568
           GLLM L+GDA++    E+D R++LL++K+
Sbjct: 120 GLLMRLQGDANNLHGFEVDSRVYLLMKKL 148

>P52434:RPAB3_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC3 - Homo|
           sapiens (Human)
          Length = 150

 Score =  137 bits (345), Expect = 6e-32
 Identities = 71/149 (47%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
 Frame = +2

Query: 125 MAEHLFEDIFHVTRIDPDGKKFDRVNRIEARSEQLDMYMQLDIATDVYPMHMGDKFTMVL 304
           MA  LFEDIF V  IDP+GKKFDRV+R+   SE   M + LD+   +YP+ +GDKF +V+
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 305 APTLNLDGTPDTGYYTQA-GRKTLADKYDYVMHGKLYKISEDGGSKDKTAPKVEIYASFG 481
           A TL  DGT D G Y     R + AD+++YVM+GK+Y+I  D  S +  A ++  Y S+G
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTE-AATRLSAYVSYG 119

Query: 482 GLLMLLKGDASSAANLELDQRLFLLIRKV 568
           GLLM L+GDA++    E+D R++LL++K+
Sbjct: 120 GLLMRLQGDANNLHGFEVDSRVYLLMKKL 148

>Q19826:RPAB3_CAEEL Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3|
           - Caenorhabditis elegans
          Length = 148

 Score =  125 bits (313), Expect = 3e-28
 Identities = 64/147 (43%), Positives = 90/147 (61%)
 Frame = +2

Query: 125 MAEHLFEDIFHVTRIDPDGKKFDRVNRIEARSEQLDMYMQLDIATDVYPMHMGDKFTMVL 304
           MA  +F+D+F V  +DPDGKKFDRV+R    +E   M + +DI + +YP+   DK  +VL
Sbjct: 1   MAGIIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKVRLVL 60

Query: 305 APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDGGSKDKTAPKVEIYASFGG 484
           A TL  DG  D G Y          +Y+YVM+GK+Y++ +D    D    K+  YASFGG
Sbjct: 61  ATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDTGTD--GGKLAAYASFGG 118

Query: 485 LLMLLKGDASSAANLELDQRLFLLIRK 565
           LLM LKG+A +    E+D  L+LL++K
Sbjct: 119 LLMRLKGEAINLHGFEVDMNLYLLMKK 145

>P20436:RPAB3_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC3 -|
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 146

 Score = 95.1 bits (235), Expect = 3e-19
 Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 8/155 (5%)
 Frame = +2

Query: 125 MAEHLFEDIFHVTRIDPDGKKFDRVNRIEARSEQLDMY-MQLDIATDVYPMHMGDKFTMV 301
           M+  LF+DIF V+ +DP   ++++V RIEA S   D   + LDI  +++P+   D  T+ 
Sbjct: 1   MSNTLFDDIFQVSEVDPG--RYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVT 58

Query: 302 LAPTLNLDGTPDTGYYT-------QAGRKTLADKYDYVMHGKLYKISEDGGSKDKTAPKV 460
           +A +LNL+ TP             QAG ++LAD YDYVM+G  YK  E   SKD  A   
Sbjct: 59  IASSLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKFEE--VSKDLIA--- 113

Query: 461 EIYASFGGLLMLLKGDASSAANLELDQRLFLLIRK 565
            +Y SFGGLLM L+G+  +  NL+  +  +LLIR+
Sbjct: 114 -VYYSFGGLLMRLEGNYRNLNNLK-QENAYLLIRR 146

>Q92399:RPAB3_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC3 -|
           Schizosaccharomyces pombe (Fission yeast)
          Length = 125

 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 53/143 (37%), Positives = 82/143 (57%)
 Frame = +2

Query: 137 LFEDIFHVTRIDPDGKKFDRVNRIEARSEQLDMYMQLDIATDVYPMHMGDKFTMVLAPTL 316
           L ++IF VT +D   +K+ RV+RI A S Q DM + LDI + +YP+     F++ +   L
Sbjct: 6   LLDEIFTVTSVDK--QKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSNL 63

Query: 317 NLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDGGSKDKTAPKVEIYASFGGLLML 496
           N   +PD           L +  DY+M+GK+Y++ E   +KD+   KV +Y SFGGLLM 
Sbjct: 64  N---SPD-----------LKEAADYIMYGKVYRVEE---AKDE---KVSVYVSFGGLLMA 103

Query: 497 LKGDASSAANLELDQRLFLLIRK 565
           ++G       L LD  ++LL+R+
Sbjct: 104 IEGSHRKLYRLSLD-HVYLLLRR 125

>Q47587:RDGA_PECCC HTH-type transcriptional regulator rdgA - Pectobacterium|
           carotovorum subsp. carotovorum (Erwinia carotovora
           subsp. carotovora)
          Length = 244

 Score = 33.1 bits (74), Expect = 1.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 392 VMHGKLYKISEDGGSKDKTAPKVEIYASFGGLLML 496
           ++ GKLY I+++GG  DK     ++Y   GGLL +
Sbjct: 181 IIDGKLYAIAQEGGGNDKLKRIKQLYRKPGGLLTI 215


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 158,255,972
Number of extensions: 3482180
Number of successful extensions: 9868
Number of sequences better than 10.0: 6
Number of HSP's gapped: 9853
Number of HSP's successfully gapped: 6
Length of query: 294
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 182
Effective length of database: 69,965,399
Effective search space: 12733702618
Effective search space used: 12733702618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)