ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf39l16 |
|---|---|
| Clone Library Name | barley_pub |
>Q6JHU7:P3H2_CHICK Prolyl 3-hydroxylase 2 precursor - Gallus gallus (Chicken)| Length = 694 Score = 40.4 bits (93), Expect = 0.019 Identities = 56/216 (25%), Positives = 82/216 (37%), Gaps = 60/216 (27%) Frame = +2 Query: 98 RLLIPGFLSPETCKELEFVHWSCGTAG--YRPSVV----------STSLPHLAATGCGHL 241 R+L+ +S E C+EL V AG YR +T L L G + Sbjct: 450 RVLLDNVISEEQCRELHRVASGIMLAGDGYRGKTSPHTPNERFEGATVLKALKYGYEGRV 509 Query: 242 LLP----FVPIRERLRDAVESFFSCHFDLFVEFTGLVSWCKGASIGW-----------HS 376 L F I E+ R VES+F + L+ +T LV C+ A G H+ Sbjct: 510 PLKSARLFYDISEKARRIVESYFMLNSTLYFSYTHLV--CRTALSGQQERRNDLSHPIHA 567 Query: 377 DD-------NKPYLRQRAFT---------------DGE-----------PSSVIPVAGDA 457 D+ N+ + A+T GE +S+ P G Sbjct: 568 DNCLLDPEANECWKEPPAYTFRDYSALLYMNADFEGGEFIFTEMDAKTVTASIKPKCGRM 627 Query: 458 VIYTADNRNVHCVDEVTEGERLTLTLWFTRDSTFDE 565 V +++ N H V VT+G+R + LWFT D + E Sbjct: 628 VSFSSGGENPHGVKAVTKGQRCAVALWFTLDPLYRE 663
>Q32P28:P3H1_HUMAN Prolyl 3-hydroxylase 1 precursor - Homo sapiens (Human)| Length = 736 Score = 40.4 bits (93), Expect = 0.019 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%) Frame = +2 Query: 428 SSVIPVAGDAVIYTADNRNVHCVDEVTEGERLTLTLWFTRDSTF--------DEDPKLLS 583 + V P G AV +++ N H V VT G+R + LWFT D D+ K+L Sbjct: 639 AEVQPQCGRAVGFSSGTENPHGVKAVTRGQRCAIALWFTLDPRHSERDRVQADDLVKMLF 698 Query: 584 FLSQASLSYE-PADQNSYIPLPASDNM 661 + LS E P D P PA +++ Sbjct: 699 SPEEMDLSQEQPLDAQQGPPEPAQESL 725
>Q8IVL5:P3H2_HUMAN Prolyl 3-hydroxylase 2 precursor - Homo sapiens (Human)| Length = 708 Score = 39.7 bits (91), Expect = 0.032 Identities = 54/216 (25%), Positives = 82/216 (37%), Gaps = 60/216 (27%) Frame = +2 Query: 98 RLLIPGFLSPETCKELEFVHWSCGTAG--YRPSVV----------STSLPHLAATGCGHL 241 R+L+ LS E C+EL V G YR +T L L + G + Sbjct: 464 RVLLDNVLSEEQCRELHSVASGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKSGYEGRV 523 Query: 242 LLP----FVPIRERLRDAVESFFSCHFDLFVEFTGLVSWCKGASIGW-----------HS 376 L F I E+ R VES+F + L+ +T +V C+ A G H+ Sbjct: 524 PLKSARLFYDISEKARRIVESYFMLNSTLYFSYTHMV--CRTALSGQQDRRNDLSHPIHA 581 Query: 377 DD-------NKPYLRQRAFT---------------DGE-----------PSSVIPVAGDA 457 D+ N+ + A+T GE +S+ P G Sbjct: 582 DNCLLDPEANECWKEPPAYTFRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRM 641 Query: 458 VIYTADNRNVHCVDEVTEGERLTLTLWFTRDSTFDE 565 + +++ N H V VT+G+R + LWFT D + E Sbjct: 642 ISFSSGGENPHGVKAVTKGKRCAVALWFTLDPLYRE 677
>Q4KLM6:P3H2_RAT Prolyl 3-hydroxylase 2 precursor - Rattus norvegicus (Rat)| Length = 703 Score = 38.9 bits (89), Expect = 0.055 Identities = 54/216 (25%), Positives = 80/216 (37%), Gaps = 60/216 (27%) Frame = +2 Query: 98 RLLIPGFLSPETCKELEFVHWSCGTAG--YRPSVV----------STSLPHLAATGCGHL 241 R+L+ LS E C+EL V G YR +T L L G + Sbjct: 459 RVLLDNVLSEEQCRELHSVASGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKFGYEGRV 518 Query: 242 LLP----FVPIRERLRDAVESFFSCHFDLFVEFTGLVSWCKGASIGW-----------HS 376 L F I E+ R VES+F + L+ +T +V C+ A G H+ Sbjct: 519 PLKSARLFYDISEKARKIVESYFMLNSTLYFSYTHMV--CRTALSGQQDRRNDLSHPIHA 576 Query: 377 DD-------NKPYLRQRAFT---------------DGE-----------PSSVIPVAGDA 457 D+ N+ + A+T GE +S+ P G Sbjct: 577 DNCLLDPEANECWKEPPAYTFRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRM 636 Query: 458 VIYTADNRNVHCVDEVTEGERLTLTLWFTRDSTFDE 565 + +++ N H V VT G+R + LWFT D + E Sbjct: 637 ISFSSGGENPHGVKAVTRGQRCAVALWFTLDPLYRE 672
>Q8CG71:P3H2_MOUSE Prolyl 3-hydroxylase 2 precursor - Mus musculus (Mouse)| Length = 703 Score = 38.9 bits (89), Expect = 0.055 Identities = 52/216 (24%), Positives = 82/216 (37%), Gaps = 60/216 (27%) Frame = +2 Query: 98 RLLIPGFLSPETCKELEFVH---------WSCGTAGYRPSVVSTSLPHLAATGCGHL-LL 247 R+L+ LS E C+EL V + T+ + P+ L A G+ + Sbjct: 459 RVLLDNVLSQEQCRELHSVANGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKFGYEGRV 518 Query: 248 P------FVPIRERLRDAVESFFSCHFDLFVEFTGLVSWCKGASIGW-----------HS 376 P F I E+ R VES+F + L+ +T +V C+ A G H+ Sbjct: 519 PLKSARLFYDISEKARKIVESYFMLNSTLYFSYTHMV--CRTALSGQQDRRNDLSHPIHA 576 Query: 377 DD-------NKPYLRQRAFT---------------DGE-----------PSSVIPVAGDA 457 D+ N+ + A+T GE +S+ P G Sbjct: 577 DNCLLDPEANECWKEPPAYTFRDYSALLYMNDDFDGGEFIFTEMDAKTVTASIKPKCGRM 636 Query: 458 VIYTADNRNVHCVDEVTEGERLTLTLWFTRDSTFDE 565 + +++ N H V VT G+R + LWFT D + E Sbjct: 637 ISFSSGGENPHGVKAVTRGQRCAVALWFTLDPLYRE 672
>Q9R1J8:P3H1_RAT Prolyl 3-hydroxylase 1 precursor - Rattus norvegicus (Rat)| Length = 728 Score = 38.9 bits (89), Expect = 0.055 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Frame = +2 Query: 428 SSVIPVAGDAVIYTADNRNVHCVDEVTEGERLTLTLWFTRDSTFDE-DPKLLSFLSQASL 604 + V P G AV +++ N H V VT G+R + LWFT D E D L + Sbjct: 631 AEVQPQCGRAVGFSSGTENPHGVKAVTRGQRCAIALWFTLDPRHSERDRVQADDLVKMLF 690 Query: 605 SYEPADQNSYIPLP 646 S E D PLP Sbjct: 691 SPEEVDLPQEQPLP 704
>Q3V1T4:P3H1_MOUSE Prolyl 3-hydroxylase 1 precursor - Mus musculus (Mouse)| Length = 739 Score = 38.9 bits (89), Expect = 0.055 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Frame = +2 Query: 428 SSVIPVAGDAVIYTADNRNVHCVDEVTEGERLTLTLWFTRDSTFDE-DPKLLSFLSQASL 604 + V P G AV +++ N H V VT G+R + LWFT D E D L + Sbjct: 642 AEVQPQCGRAVGFSSGTENPHGVKAVTRGQRCAIALWFTLDPRHSERDRVQADDLVKMLF 701 Query: 605 SYEPADQNSYIPLP 646 S E D PLP Sbjct: 702 SPEEVDLPQEQPLP 715
>Q6JHU8:P3H1_CHICK Prolyl 3-hydroxylase 1 precursor - Gallus gallus (Chicken)| Length = 725 Score = 38.5 bits (88), Expect = 0.072 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = +2 Query: 422 EPSSVIPVAGDAVIYTADNRNVHCVDEVTEGERLTLTLWFTRDSTFDE 565 + + V P G AV +++ + N H V VT+G+R + LWFT D E Sbjct: 630 QTAEVQPQCGRAVGFSSGSENPHGVKAVTKGQRCAIALWFTLDPRHSE 677
>Q6PDU1:SFRS2_RAT Splicing factor, arginine/serine-rich 2 - Rattus norvegicus (Rat)| Length = 221 Score = 36.2 bits (82), Expect = 0.36 Identities = 21/42 (50%), Positives = 26/42 (61%) Frame = -2 Query: 339 TSPVNSTKRSKWQEKKDSTASRSRSRMGTKGRSRWPQPVAAR 214 TS S +RSK K S+ SRSRSR ++ RSR P PV+ R Sbjct: 160 TSKSRSARRSK---SKSSSVSRSRSRSRSRSRSRSPPPVSKR 198
>Q5R1W5:SFRS2_PANTR Splicing factor, arginine/serine-rich 2 - Pan troglodytes| (Chimpanzee) Length = 221 Score = 36.2 bits (82), Expect = 0.36 Identities = 21/42 (50%), Positives = 26/42 (61%) Frame = -2 Query: 339 TSPVNSTKRSKWQEKKDSTASRSRSRMGTKGRSRWPQPVAAR 214 TS S +RSK K S+ SRSRSR ++ RSR P PV+ R Sbjct: 160 TSKSRSARRSK---SKSSSVSRSRSRSRSRSRSRSPPPVSKR 198
>Q62093:SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 - Mus musculus (Mouse)| Length = 221 Score = 36.2 bits (82), Expect = 0.36 Identities = 21/42 (50%), Positives = 26/42 (61%) Frame = -2 Query: 339 TSPVNSTKRSKWQEKKDSTASRSRSRMGTKGRSRWPQPVAAR 214 TS S +RSK K S+ SRSRSR ++ RSR P PV+ R Sbjct: 160 TSKSRSARRSK---SKSSSVSRSRSRSRSRSRSRSPPPVSKR 198
>Q01130:SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 - Homo sapiens (Human)| Length = 221 Score = 36.2 bits (82), Expect = 0.36 Identities = 21/42 (50%), Positives = 26/42 (61%) Frame = -2 Query: 339 TSPVNSTKRSKWQEKKDSTASRSRSRMGTKGRSRWPQPVAAR 214 TS S +RSK K S+ SRSRSR ++ RSR P PV+ R Sbjct: 160 TSKSRSARRSK---SKSSSVSRSRSRSRSRSRSRSPPPVSKR 198
>Q3MHR5:SFRS2_BOVIN Splicing factor, arginine/serine-rich 2 - Bos taurus (Bovine)| Length = 221 Score = 36.2 bits (82), Expect = 0.36 Identities = 21/42 (50%), Positives = 26/42 (61%) Frame = -2 Query: 339 TSPVNSTKRSKWQEKKDSTASRSRSRMGTKGRSRWPQPVAAR 214 TS S +RSK K S+ SRSRSR ++ RSR P PV+ R Sbjct: 160 TSKSRSARRSK---SKSSSVSRSRSRSRSRSRSRSPPPVSKR 198
>Q06A98:SFRS2_PIG Splicing factor, arginine/serine-rich 2 - Sus scrofa (Pig)| Length = 221 Score = 34.7 bits (78), Expect = 1.0 Identities = 20/42 (47%), Positives = 25/42 (59%) Frame = -2 Query: 339 TSPVNSTKRSKWQEKKDSTASRSRSRMGTKGRSRWPQPVAAR 214 TS S +RSK K S+ SRSRSR ++ RSR P P + R Sbjct: 160 TSKSRSARRSK---SKSSSVSRSRSRSRSRSRSRSPPPASKR 198
>P30352:SFRS2_CHICK Splicing factor, arginine/serine-rich 2 - Gallus gallus (Chicken)| Length = 221 Score = 34.7 bits (78), Expect = 1.0 Identities = 20/42 (47%), Positives = 25/42 (59%) Frame = -2 Query: 339 TSPVNSTKRSKWQEKKDSTASRSRSRMGTKGRSRWPQPVAAR 214 TS S +RSK K S+ SRSRSR ++ RSR P P + R Sbjct: 160 TSKSRSARRSK---SKSSSVSRSRSRSRSRSRSRSPPPTSKR 198
>O22397:POT1_ARATH Potassium transporter 1 - Arabidopsis thaliana (Mouse-ear cress)| Length = 712 Score = 33.1 bits (74), Expect = 3.0 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -1 Query: 940 TISLVSPCCQLRCFPVVKLHHLKS 869 T S++S CC L CFP VK+ H S Sbjct: 364 TFSIISQCCALDCFPRVKIIHTSS 387
>O16098:MAL1_DROVI Maltase 1 precursor - Drosophila virilis (Fruit fly)| Length = 586 Score = 32.3 bits (72), Expect = 5.2 Identities = 23/91 (25%), Positives = 40/91 (43%) Frame = +2 Query: 338 VSWCKGASIGWHSDDNKPYLRQRAFTDGEPSSVIPVAGDAVIYTADNRNVHCVDEVTEGE 517 VS G++ WH + + YLRQ FT G+P + AV+ D ++ + + G Sbjct: 176 VSVFSGSAWQWHEERQQFYLRQ--FTKGQPD--LNYRNPAVVQAMDEVLLYWLQKGVAGF 231 Query: 518 RLTLTLWFTRDSTFDEDPKLLSFLSQASLSY 610 R+ ++ D ++P S S+ Y Sbjct: 232 RIDAVIYIYEDEQLRDEPLSGSTSDPNSVDY 262
>P12389:ACHA2_RAT Neuronal acetylcholine receptor subunit alpha-2 precursor - Rattus| norvegicus (Rat) Length = 511 Score = 32.0 bits (71), Expect = 6.7 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 11/87 (12%) Frame = -3 Query: 1304 SSEVMLPNIIVMLLYAMIFIFISTVFS-----------SLHNIPGWARKDLQQKWFHWTA 1158 S+ +++P I LL+ MIF+ +S V + S HN+P W R L + W Sbjct: 297 STSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSPSTHNMPNWVRVALLGRVPRW-- 354 Query: 1157 NMAKMSTTFSSVLLNNSPT*QVLTQHH 1077 M+ + L+ SP ++ +H Sbjct: 355 --LMMNRPLPPMELHGSPDLKLSPSYH 379
>O35326:SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 - Mus musculus (Mouse)| Length = 270 Score = 32.0 bits (71), Expect = 6.8 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = -2 Query: 336 SPVNSTKRSKWQEKKDSTASRSRSRMGTKGRSRWPQPVAARCGSDVDTTEGRYPAVPQLQ 157 S + S RS+ + K + SRSRSR +K RS PV + ++ + PA Q Sbjct: 196 SSLRSRSRSRSRRSKSYSRSRSRSRSRSKSRSGSRSPVPEKSQKRGSSSRSKSPASVDRQ 255 Query: 156 WTNSSS 139 + S S Sbjct: 256 RSRSRS 261
>Q9R1C7:PRP40_MOUSE Pre-mRNA-processing factor 40 homolog A - Mus musculus (Mouse)| Length = 953 Score = 32.0 bits (71), Expect = 6.8 Identities = 14/53 (26%), Positives = 30/53 (56%) Frame = -2 Query: 348 HQLTSPVNSTKRSKWQEKKDSTASRSRSRMGTKGRSRWPQPVAARCGSDVDTT 190 H+ SP + T+R K +++KD + + RSR ++ + + P+ + + DT+ Sbjct: 877 HKSDSPESDTEREKDKKEKDRDSEKDRSRQRSESKHKSPKKKTGKDSGNWDTS 929
>P33973:PKN1_MYXXA Serine/threonine-protein kinase pkn1 - Myxococcus xanthus| Length = 693 Score = 32.0 bits (71), Expect = 6.8 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = +1 Query: 130 DLQGAGVRPLELRDGGVPAFGGVYIAAASGCHRLRPPTPPLRAHP 264 DL GV +L G +P F +AA H+LRPP PP +P Sbjct: 243 DLYALGVIAYQLLTGRLP-FNDEGLAAQLVAHQLRPPPPPSSVYP 286
>Q7TNY7:MYRIP_RAT Rab effector MyRIP - Rattus norvegicus (Rat)| Length = 856 Score = 32.0 bits (71), Expect = 6.8 Identities = 19/71 (26%), Positives = 33/71 (46%) Frame = -2 Query: 303 QEKKDSTASRSRSRMGTKGRSRWPQPVAARCGSDVDTTEGRYPAVPQLQWTNSSSLQVSG 124 +E D + + S+ R ++GR + PQP A+ S P+ P+ ++S + S Sbjct: 400 EEDFDYSEALSKLRPPSQGRLKQPQPQPAQAQSSGQGPLATSPSNPEAMCSDSETSSTSS 459 Query: 123 ERNPGIRRRTL 91 R G R + L Sbjct: 460 SREAGCRAKLL 470 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 250,132,304 Number of extensions: 5600104 Number of successful extensions: 15844 Number of sequences better than 10.0: 22 Number of HSP's gapped: 15756 Number of HSP's successfully gapped: 22 Length of query: 487 Length of database: 100,686,439 Length adjustment: 117 Effective length of query: 370 Effective length of database: 68,593,924 Effective search space: 25379751880 Effective search space used: 25379751880 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
