ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf39l04 |
|---|---|
| Clone Library Name | barley_pub |
>Q8BGC0:HTSF1_MOUSE HIV Tat-specific factor 1 homolog - Mus musculus (Mouse)| Length = 757 Score = 35.4 bits (80), Expect = 0.30 Identities = 24/73 (32%), Positives = 36/73 (49%) Frame = +1 Query: 286 QAGEQQGNASEDTHKTTTAHGDVMTHSFGEGYSTRSDEEGFGGVYGQNDPVLNPGTEMHP 465 + GE +G+ASE K + GD GEG S + +EEG + + NP TE Sbjct: 437 EGGESEGDASEKDAKEGGSDGDHPEREGGEGCSKKENEEGCPERALEPEEG-NPQTEAQE 495 Query: 466 NHPEYDKSQGSEV 504 N PE + + S++ Sbjct: 496 NGPEREARKKSKM 508
>Q91YK8:LYPD3_MOUSE Ly6/PLAUR domain-containing protein 3 precursor - Mus musculus| (Mouse) Length = 363 Score = 35.0 bits (79), Expect = 0.39 Identities = 27/99 (27%), Positives = 36/99 (36%) Frame = +1 Query: 139 LVNLVAPATAAQVGRRRSVSATSNAAAPVPGDQDFGMDPAKQQHHLPKAQAGEQQGNASE 318 LV L P TAA R ++ S+T++ AAP A+ H P E Sbjct: 240 LVLLPPPTTAAPSTRAQNSSSTTSTAAPTTTTSIIKPTTAQASHTSPHEMDLEVIQEEGA 299 Query: 319 DTHKTTTAHGDVMTHSFGEGYSTRSDEEGFGGVYGQNDP 435 HG H G+ RS+ E + G G P Sbjct: 300 SLSGGAAGHGGTAGHGGAAGHQDRSNMEKYPGKGGAQIP 338
>Q17RD7:SYT16_HUMAN Synaptotagmin-16 - Homo sapiens (Human)| Length = 645 Score = 34.7 bits (78), Expect = 0.51 Identities = 27/108 (25%), Positives = 42/108 (38%) Frame = +1 Query: 256 AKQQHHLPKAQAGEQQGNASEDTHKTTTAHGDVMTHSFGEGYSTRSDEEGFGGVYGQNDP 435 A+++HHL K ++G Q G S+ T +G +SFG+ + + V Q + Sbjct: 141 AEEEHHLEKQRSGLQHGFDSQLPGTLETVNGKKQVNSFGDDEELSTSSDSDEEVIKQFEI 200 Query: 436 VLNPGTEMHPNHPEYDKSQGSEVKEKEKARHLKDDKHATXXXXXERLD 579 ++ E K G E K K L + T E LD Sbjct: 201 SVSRSQSFRSVTSEKGKQTGLEQKPKFSRSLLTHGEDGTEVSACEDLD 248
>P46526:CS66_WHEAT Cold shock protein CS66 - Triticum aestivum (Wheat)| Length = 469 Score = 32.7 bits (73), Expect = 1.9 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 2/82 (2%) Frame = +1 Query: 289 AGEQQGNASEDTHKTTTAHGDVMTHSFGEGYS--TRSDEEGFGGVYGQNDPVLNPGTEMH 462 AGE++G + K HGD + G++ GG YGQ GT +H Sbjct: 8 AGEKKGIMEKIKEKLPGGHGDHKETAGAHGHAGTVTHGAPATGGAYGQEGHTGTTGTGLH 67 Query: 463 PNHPEYDKSQGSEVKEKEKARH 528 H K +K+K H Sbjct: 68 GAHAGEKKGVMENIKDKLPGGH 89
>P46525:CS120_WHEAT Cold-shock protein CS120 - Triticum aestivum (Wheat)| Length = 391 Score = 32.0 bits (71), Expect = 3.3 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 2/82 (2%) Frame = +1 Query: 289 AGEQQGNASEDTHKTTTAHGDVMTHSFGEGY--STRSDEEGFGGVYGQNDPVLNPGTEMH 462 AGE++G + K HGD + G+ + GG YGQ GT +H Sbjct: 8 AGEKKGIMEKIKEKLPGGHGDHKETAGTHGHPGTATHGAPATGGAYGQQGHAGTTGTGLH 67 Query: 463 PNHPEYDKSQGSEVKEKEKARH 528 H K +K+K H Sbjct: 68 GAHAGEKKGVMENIKDKLPGGH 89
>Q08D19:GOLP4_XENTR Golgi phosphoprotein 4 - Xenopus tropicalis (Western clawed frog)| (Silurana tropicalis) Length = 638 Score = 31.6 bits (70), Expect = 4.3 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 4/87 (4%) Frame = +1 Query: 295 EQQGNASEDTHKTTTAHGDVMTHSFGEGYSTRSDEEGFGGVYG----QNDPVLNPGTEMH 462 E+Q E+ + D + EG + EE + G + DP L P ++ Sbjct: 332 EEQDQVQEEQEQHKPEEDDAL-----EGNNEEQKEEETNNMQGNKHTERDPTLKPHSKYK 386 Query: 463 PNHPEYDKSQGSEVKEKEKARHLKDDK 543 + E + Q ++ E+ARHLK+ + Sbjct: 387 SAYEEQLEQQQLAARQMEEARHLKEQQ 413
>Q83RD2:ASR_SHIFL Acid shock protein precursor - Shigella flexneri| Length = 102 Score = 31.2 bits (69), Expect = 5.6 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = +1 Query: 148 LVAPATAAQVGRRRSVSATSNAAAPVPGDQDFGMDPAKQQHHLPKAQAG-EQQGNASEDT 324 ++A AA +G + A A P P PAK HH + +A Q+ A++ Sbjct: 4 VLALVVAAAMGLSSAAFAAETATTPAPTATTTKAAPAKTTHHKKQHKAAPAQKAQAAKKH 63 Query: 325 HKTTTA 342 HK T A Sbjct: 64 HKNTKA 69
>Q8X783:ASR_ECO57 Acid shock protein precursor - Escherichia coli O157:H7| Length = 102 Score = 31.2 bits (69), Expect = 5.6 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = +1 Query: 148 LVAPATAAQVGRRRSVSATSNAAAPVPGDQDFGMDPAKQQHHLPKAQAG-EQQGNASEDT 324 ++A AA +G + A A P P PAK HH + +A Q+ A++ Sbjct: 4 VLALVVAAAMGLSSAAFAAETATTPAPTATTTKAAPAKTTHHKKQHKAAPAQKAQAAKKH 63 Query: 325 HKTTTA 342 HK T A Sbjct: 64 HKNTKA 69
>Q7S5D9:DHH1_NEUCR ATP-dependent RNA helicase dhh-1 - Neurospora crassa| Length = 569 Score = 30.8 bits (68), Expect = 7.4 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 9/106 (8%) Frame = +1 Query: 205 SNAAAPVPGDQDFGMDPAKQQHHLPKAQA--------GEQQGNASEDTHKTTTAHGDVMT 360 SN P G+Q G +P QQ H P QA G Q G + + T + Sbjct: 465 SNQLPPQQGNQQLGFNPQAQQPHRPIPQAQGDWQGQNGRQNGTGASNNQPRPTNY----Q 520 Query: 361 HSFGEGYSTRSDE-EGFGGVYGQNDPVLNPGTEMHPNHPEYDKSQG 495 ++ G+ S+R GF G G+ + N G + P + QG Sbjct: 521 NNRGQPGSSRGGRGRGFQGQGGRQNQ--NYGGQRGPRTQGQGQPQG 564
>P06026:CARP_RHICH Rhizopuspepsin precursor - Rhizopus chinensis (Bread mold)| Length = 393 Score = 30.8 bits (68), Expect = 7.4 Identities = 20/79 (25%), Positives = 37/79 (46%) Frame = +1 Query: 190 SVSATSNAAAPVPGDQDFGMDPAKQQHHLPKAQAGEQQGNASEDTHKTTTAHGDVMTHSF 369 +++A + A PG++ + AK ++ P A+ Q+ A + HK T+ G ++ + Sbjct: 11 AIAALAVAVDAAPGEKKISIPLAKNPNYKPSAKNAIQKAIAKYNKHKINTSTGGIVPDA- 69 Query: 370 GEGYSTRSDEEGFGGVYGQ 426 G G +D YGQ Sbjct: 70 GVGTVPMTDYGNDVEYYGQ 88
>P12949:DHN4_HORVU Dehydrin DHN4 - Hordeum vulgare (Barley)| Length = 225 Score = 30.4 bits (67), Expect = 9.6 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 7/92 (7%) Frame = +1 Query: 262 QQHHLPKAQAGEQQGNASEDTHKT---TTAHGDVMTH-SFGE-GYS--TRSDEEGFGGVY 420 QQ H G G + H T AHG T ++G+ G++ T + G GG Y Sbjct: 121 QQGHTGMTGMGATDGTYGQQGHTGMAGTGAHGTAATGGTYGQQGHTGMTGTGMHGTGGTY 180 Query: 421 GQNDPVLNPGTEMHPNHPEYDKSQGSEVKEKE 516 GQ GT MH Y + G++ EK+ Sbjct: 181 GQQGHTGMTGTGMHGTGGTYGQ-HGTDTGEKK 211 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 107,344,602 Number of extensions: 1907779 Number of successful extensions: 5441 Number of sequences better than 10.0: 11 Number of HSP's gapped: 5434 Number of HSP's successfully gapped: 11 Length of query: 289 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 177 Effective length of database: 69,965,399 Effective search space: 12383875623 Effective search space used: 12383875623 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
