ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf39k10 |
|---|---|
| Clone Library Name | barley_pub |
>Q6IR76:TMM19_XENLA Transmembrane protein 19 - Xenopus laevis (African clawed frog)| Length = 336 Score = 105 bits (263), Expect = 2e-22 Identities = 57/148 (38%), Positives = 86/148 (58%), Gaps = 1/148 (0%) Frame = +1 Query: 82 LIASGAVRRRSLDASGGAAGFAVMALHLACGYRYGALLLAFFFTSSKVTKIGEDRKRRVE 261 +I S +++RSLD+SG G V + Y + + LLAFFF SSK+TK + K+ + Sbjct: 63 IIVSHGIKKRSLDSSGALGGLLVGFILTIANYSFFSALLAFFFISSKLTKWRGEVKKCYD 122 Query: 262 EDFKEGGQRNWIQVLANSAIATVLVIVLAIMTGGQDQCLDSNGSKVITGIIGAIIGHYCC 441 ++KEGGQRNW+QV N + L ++ I G + +D + + + +++G C Sbjct: 123 SEYKEGGQRNWVQVFCNGGLPAELALLYMIENGPGEIPIDFSKEYTASWMCLSLLGALSC 182 Query: 442 CNGDTWSSEIG-VLSDEQPRLVTTLKVV 522 GDTW+SEIG VLS PRL+TT + V Sbjct: 183 SAGDTWASEIGPVLSKSAPRLITTWEKV 210
>Q5RF73:TMM19_PONPY Transmembrane protein 19 - Pongo pygmaeus (Orangutan)| Length = 336 Score = 104 bits (259), Expect = 4e-22 Identities = 63/181 (34%), Positives = 98/181 (54%), Gaps = 2/181 (1%) Frame = +1 Query: 82 LIASGAVRRRSLDASGGAAGFAVMALHLACGYRYGALLLAFFFTSSKVTKIGEDRKRRVE 261 LI S ++++SLD SG G V + + + LL FF +SSK+TK + K+R++ Sbjct: 63 LIISNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTKWKGEMKKRLD 122 Query: 262 EDFKEGGQRNWIQVLANSAIATVLVIVLAIMTGGQDQCLDSNGSKVITGIIGAIIGHYCC 441 ++KEGGQRNWIQV N A+ T L ++ I G + +D + + + +++ C Sbjct: 123 SEYKEGGQRNWIQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWMCLSLLAALAC 182 Query: 442 CNGDTWSSEIG-VLSDEQPRLVTTL-KVVSKRGPTVTKISGMTILDNDAVNAVSVLLTSV 615 GDTW+SE+G VLS PRL+TT KV VT + ++ L ++ LT + Sbjct: 183 SAGDTWASEVGPVLSKSPPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLTQL 242 Query: 616 I 618 I Sbjct: 243 I 243
>Q96HH6:TMM19_HUMAN Transmembrane protein 19 - Homo sapiens (Human)| Length = 336 Score = 103 bits (258), Expect = 6e-22 Identities = 62/181 (34%), Positives = 98/181 (54%), Gaps = 2/181 (1%) Frame = +1 Query: 82 LIASGAVRRRSLDASGGAAGFAVMALHLACGYRYGALLLAFFFTSSKVTKIGEDRKRRVE 261 LI S ++++SLD SG G V + + + LL FF +SSK+TK + K+R++ Sbjct: 63 LIVSNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTKWKGEVKKRLD 122 Query: 262 EDFKEGGQRNWIQVLANSAIATVLVIVLAIMTGGQDQCLDSNGSKVITGIIGAIIGHYCC 441 ++KEGGQRNW+QV N A+ T L ++ I G + +D + + + +++ C Sbjct: 123 SEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWMCLSLLAALAC 182 Query: 442 CNGDTWSSEIG-VLSDEQPRLVTTL-KVVSKRGPTVTKISGMTILDNDAVNAVSVLLTSV 615 GDTW+SE+G VLS PRL+TT KV VT + ++ L ++ LT + Sbjct: 183 SAGDTWASEVGPVLSKSSPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLTQL 242 Query: 616 I 618 I Sbjct: 243 I 243
>Q0P4L9:TMM19_XENTR Transmembrane protein 19 - Xenopus tropicalis (Western clawed frog)| (Silurana tropicalis) Length = 336 Score = 97.4 bits (241), Expect = 5e-20 Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 1/148 (0%) Frame = +1 Query: 82 LIASGAVRRRSLDASGGAAGFAVMALHLACGYRYGALLLAFFFTSSKVTKIGEDRKRRVE 261 +I +++RSLD SG G V + Y + + LL FFF SSK+TK + K+ + Sbjct: 63 IIVWHGIKKRSLDNSGALGGLLVGFILTIANYSFFSALLTFFFISSKLTKWKGEVKKCYD 122 Query: 262 EDFKEGGQRNWIQVLANSAIATVLVIVLAIMTGGQDQCLDSNGSKVITGIIGAIIGHYCC 441 ++KEGGQRNW+QV N + L ++ I G + +D + + + +++G Sbjct: 123 SEYKEGGQRNWVQVFCNGGLPAELALLYMIENGPGEIPIDFSKEYTASWMCLSLLGALAS 182 Query: 442 CNGDTWSSEIG-VLSDEQPRLVTTLKVV 522 GDTW+SEIG VLS PRL+TT + V Sbjct: 183 SAGDTWASEIGPVLSKSSPRLITTWEKV 210
>Q6P726:TMM19_RAT Transmembrane protein 19 - Rattus norvegicus (Rat)| Length = 351 Score = 97.1 bits (240), Expect = 7e-20 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 1/158 (0%) Frame = +1 Query: 52 RSALGAALAFLIASGAVRRRSLDASGGAAGFAVMALHLACGYRYGALLLAFFFTSSKVTK 231 R ++ +I+ +++SLD SG G V + + + LL FF TSSK+TK Sbjct: 68 RWLFSVVVSVVISCNGFKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLTSSKLTK 127 Query: 232 IGEDRKRRVEEDFKEGGQRNWIQVLANSAIATVLVIVLAIMTGGQDQCLDSNGSKVITGI 411 + K+R++ ++KEGGQRNW+QV N + T L ++ I G + +D + + Sbjct: 128 WRGEMKKRLDSEYKEGGQRNWVQVFCNGGVPTELALLYMIENGPGEMPIDFAKQHTASWM 187 Query: 412 IGAIIGHYCCCNGDTWSSEIG-VLSDEQPRLVTTLKVV 522 +++ GDTW+SE+ VLS PRL+TT + V Sbjct: 188 CLSLLAALASSAGDTWASEVAPVLSKSSPRLITTWEKV 225
>Q91W52:TMM19_MOUSE Transmembrane protein 19 - Mus musculus (Mouse)| Length = 336 Score = 95.5 bits (236), Expect = 2e-19 Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 1/148 (0%) Frame = +1 Query: 82 LIASGAVRRRSLDASGGAAGFAVMALHLACGYRYGALLLAFFFTSSKVTKIGEDRKRRVE 261 +IA +++SLD SG G V + + + L+ FF +SSK+TK + K++++ Sbjct: 63 VIACNGFKKKSLDHSGALGGLVVGFILTIANFSFFTSLMTFFLSSSKLTKWRGNIKKQLD 122 Query: 262 EDFKEGGQRNWIQVLANSAIATVLVIVLAIMTGGQDQCLDSNGSKVITGIIGAIIGHYCC 441 ++KEGGQRNW+QV N A+ T L ++ I G + +D + + + +++ Sbjct: 123 SEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEMPIDFSKQHTASWMCLSLLAALAS 182 Query: 442 CNGDTWSSEIG-VLSDEQPRLVTTLKVV 522 GDTW+SE+ VLS PRL+TT + V Sbjct: 183 SAGDTWASEVAPVLSKSSPRLITTWEKV 210
>Q58343:Y933_METJA Uncharacterized membrane protein MJ0933 - Methanococcus jannaschii| Length = 238 Score = 65.9 bits (159), Expect = 2e-10 Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 5/173 (2%) Frame = +1 Query: 25 DMATSSLAVRSALGAALAFLIASGAVRRRSLDASGGAAGFAVMALHLA--CGYRYGALLL 198 ++ T +R + + ++A + R LD + G G ++M L CG++Y LLL Sbjct: 2 EVDTMETLIRLFVSILIICVLALMIKKSRCLD-NEGVIGSSIMGFILLYFCGFKYLILLL 60 Query: 199 AFFFTSSKVTKIGEDRKRRVEEDFKEGGQRNWIQVLANSAIATVLVIVLAIMTGGQDQCL 378 +FF V+++G ++K+ + D +N VLAN I +L +LAI Sbjct: 61 SFFILGVLVSRVGLEKKKAKKMDETCRSLKN---VLANGLIP-ILFAILAIF-------- 108 Query: 379 DSNGSKVITGIIGAIIGHY---CCCNGDTWSSEIGVLSDEQPRLVTTLKVVSK 528 G A+IG+ DT+SSE+G+LS+E+PRL+TT +VV K Sbjct: 109 ---------GFNWALIGYISSIAAATSDTFSSELGILSNEKPRLITTFEVVEK 152
>P73555:Y875_SYNY3 Uncharacterized membrane protein sll0875 - Synechocystis sp.| (strain PCC 6803) Length = 258 Score = 42.7 bits (99), Expect = 0.002 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 2/163 (1%) Frame = +1 Query: 76 AFLIASGAVRRRSLDASGGAAGFAVMALHL--ACGYRYGALLLAFFFTSSKVTKIGEDRK 249 +FL+A A+ + L G V+ + + A G+R ++LA+FF S VT+IG+ K Sbjct: 26 SFLLALAAIAPKKLLTPWGYGHAWVLGVIIWAALGWRGYLVVLAYFFVGSAVTRIGQKEK 85 Query: 250 RRVEEDFKEGGQRNWIQVLANSAIATVLVIVLAIMTGGQDQCLDSNGSKVITGIIGAIIG 429 K GQR V ++ T + LAI G + L + + Sbjct: 86 EAAGIAEKRSGQRGPENVWGSA--LTAALCALAIAFGPEPWQL---------WLALGYVA 134 Query: 430 HYCCCNGDTWSSEIGVLSDEQPRLVTTLKVVSKRGPTVTKISG 558 + DT +SE+G + L+TTL+ V + + G Sbjct: 135 SFSTKLSDTTASEVGKAYGKNTFLITTLQPVPRGTEGAVSVEG 177
>P21441:MDR_LEITA Multidrug resistance protein - Leishmania tarentolae| (Sauroleishmania tarentolae) Length = 1548 Score = 34.3 bits (77), Expect = 0.57 Identities = 24/76 (31%), Positives = 37/76 (48%) Frame = +1 Query: 235 GEDRKRRVEEDFKEGGQRNWIQVLANSAIATVLVIVLAIMTGGQDQCLDSNGSKVITGII 414 GED K VEE G R + Q+++ + V L I G + S GS T ++ Sbjct: 627 GEDEKGEVEE-----GDREYYQLVSKELLRNVS---LTIPKGKLTMVIGSTGSGKST-LL 677 Query: 415 GAIIGHYCCCNGDTWS 462 GA++G Y +G+ W+ Sbjct: 678 GALMGEYSVESGELWA 693
>Q63003:5E5_RAT 5E5 antigen - Rattus norvegicus (Rat)| Length = 825 Score = 34.3 bits (77), Expect = 0.57 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Frame = -3 Query: 213 GEEESQQQRSVPIAAGKVERH-HGKPGSSARGV*RAPPDGTRRDQKGKGGTEGRADGERG 37 GE+ + Q +++P AG H H PG G A G R +GG G G G Sbjct: 528 GEQRADQSQTLPALAGAPTAHAHAVPGP---GPAAATLGGRGRRGSWRGGRRGGGAGASG 584 Query: 36 GGHVGQAQQR 7 GG G+ + R Sbjct: 585 GGRGGRGRGR 594
>P33485:VNUA_PRVKA Probable nuclear antigen - Pseudorabies virus (strain Kaplan) (PRV)| Length = 1733 Score = 31.2 bits (69), Expect = 4.8 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 16/89 (17%) Frame = -3 Query: 228 GHLGRGEE-----ESQQQRSVPIAAGKVERHH--GKPGSSARGV*RAPPDG--------T 94 GH+GRGEE + P+ A +R H G G RG+ PP G Sbjct: 1046 GHVGRGEEGRGVGPGGLAGAGPVHAVAHQRRHGAGDEGDRVRGL---PPLGRAGPGDRVA 1102 Query: 93 RRDQKGKGGTE-GRADGERGGGHVGQAQQ 10 R+Q+G+ E G +G RG G GQ ++ Sbjct: 1103 EREQRGRHLLEAGGPEGGRGAGGRGQPER 1131
>Q03251:GRP8_ARATH Glycine-rich RNA-binding protein 8 - Arabidopsis thaliana| (Mouse-ear cress) Length = 169 Score = 31.2 bits (69), Expect = 4.8 Identities = 19/46 (41%), Positives = 22/46 (47%) Frame = -3 Query: 168 GKVERHHGKPGSSARGV*RAPPDGTRRDQKGKGGTEGRADGERGGG 31 G ER G GS G R G RR+ G GG +G + G GGG Sbjct: 123 GGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGGGG 168
>Q9I2A8:ATOB_PSEAE Acetyl-CoA acetyltransferase - Pseudomonas aeruginosa| Length = 393 Score = 31.2 bits (69), Expect = 4.8 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = +1 Query: 469 IGVLSDEQPRLVTTLKVVSKRGPTVTKISGMTILDNDAVN--AVSVLLTSVITAYA 630 +G +DEQPR TT++ ++K P K +T + ++N A +VLL S A A Sbjct: 212 LGFDTDEQPRAGTTVEALAKLKPAFRKDGSVTAGNASSLNDGAAAVLLMSAAKAKA 267
>Q8NP40:IF2_CORGL Translation initiation factor IF-2 - Corynebacterium glutamicum| (Brevibacterium flavum) Length = 1004 Score = 30.8 bits (68), Expect = 6.3 Identities = 20/57 (35%), Positives = 26/57 (45%) Frame = -3 Query: 180 PIAAGKVERHHGKPGSSARGV*RAPPDGTRRDQKGKGGTEGRADGERGGGHVGQAQQ 10 P + G ER +PG R P G R Q G+G G+ DG+R G GQ + Sbjct: 208 PFSTGGGERPAPRPGGGPRPGGGPRPGGGPRPQ-GQGRPGGQRDGQRDGQRDGQGNR 263
>Q6GLQ4:PP1RA_XENLA Serine/threonine-protein phosphatase 1 regulatory subunit 10 -| Xenopus laevis (African clawed frog) Length = 819 Score = 30.4 bits (67), Expect = 8.2 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = -3 Query: 153 HHGKPGSSARGV*RAPPDGT-RRDQKGKGGTEGRADGERGG--GHVGQ 19 HHG RG R PP R++ G+GG G RGG GH G+ Sbjct: 703 HHGGERGGMRGGDRGPPPPPFHRNRGGRGGEPGYRGRGRGGERGHPGR 750
>Q82TF3:HPPA_NITEU Pyrophosphate-energized proton pump - Nitrosomonas europaea| Length = 685 Score = 30.4 bits (67), Expect = 8.2 Identities = 41/179 (22%), Positives = 63/179 (35%), Gaps = 44/179 (24%) Frame = +1 Query: 13 LSLADMATSSLAVRSALGAALAFLIASGAVRRRSLDASG--GAAGFAVM----------- 153 +S+ ++ A RS L ALA GAV + G G AG+ + Sbjct: 98 VSVQSNVRTAEAARSGLNEALAIAFRGGAVTGMLVVGLGLLGVAGYTALLVSGADETSSI 157 Query: 154 --ALHLACGYRYGALLLAFFF-----TSSKVTKIGEDRKRRVEEDFKEGGQRN------- 291 +H G+ +G L++ F +K +G D +VE E RN Sbjct: 158 SDLIHPLIGFAFGGSLISIFARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVIADN 217 Query: 292 --------------WIQVLANSAIATVLVIVLAIMTGGQDQC---LDSNGSKVITGIIG 417 + A + IAT+L+ L TG D L + ++ IIG Sbjct: 218 VGDNVGDCAGMAADLFETYAVTIIATMLLGALLFKTGTGDAAVYPLALGAASIVASIIG 276
>Q80VD1:FA98B_MOUSE Protein FAM98B - Mus musculus (Mouse)| Length = 429 Score = 30.4 bits (67), Expect = 8.2 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Frame = -3 Query: 288 ALATLLEVLLNASLAVLADLGHLGRGEEESQQQRSV----PIAAGKVERHHGKPGSSARG 121 AL+ V L LA DL + R ++++ + G+V G+P Sbjct: 259 ALSPKTTVTLAHLLAAREDLSKIIRTSSGISREKTACAINKVLMGRVPDRGGRPNEIEPP 318 Query: 120 V*RAPPDGTRRDQKGKGGTEGRADGERGGG 31 PP R++ G+GG G G GGG Sbjct: 319 PPEMPPWQKRQEGGGRGGWGGGGGGRGGGG 348 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 134,758,217 Number of extensions: 2919390 Number of successful extensions: 9142 Number of sequences better than 10.0: 17 Number of HSP's gapped: 9097 Number of HSP's successfully gapped: 17 Length of query: 262 Length of database: 100,686,439 Length adjustment: 111 Effective length of query: 151 Effective length of database: 70,239,694 Effective search space: 10606193794 Effective search space used: 10606193794 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
