| Clone Name | FLbaf46d17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001052870.1| Oryza sativa (japonica cultivar-group) Os02g0224400 (Os02g0224400) mRNA, complete cds Length = 1951 Score = 1380 bits (696), Expect = 0.0 Identities = 1245/1428 (87%) Strand = Plus / Plus Query: 432 gaggtgcccatggagctgcacacaggcaaccgtgaccgcctgataaccgcgcttcgcgcc 491 ||||||||||||||||||||| | |||||||| || ||||| | ||||||| |||||| Sbjct: 95 gaggtgcccatggagctgcacgccggcaaccgcgatcgcctcgtcgccgcgctccgcgcc 154 Query: 492 cacctctccgccaccgccagccctccccgtggcctcgctctcctccagggtggcgaggag 551 |||||||||||| ||| | |||| | ||| ||||||| ||||||||||| || |||||| Sbjct: 155 cacctctccgcctccggccgccccctccgcggcctcgtcctcctccagggaggggaggag 214 Query: 552 cagacacgacattgcactgatcatcttgagctatttaggcaggagagctactttgcttat 611 ||||| || | ||||| ||||| || ||||| || |||||||||||||||||||||||| Sbjct: 215 cagacgcggtactgcaccgatcacctcgagctcttcaggcaggagagctactttgcttat 274 Query: 612 ctttttggagtgcgcgagccagggttctacggcgctatagacatcgcctctggacagtcc 671 || || |||||| | || || |||||||| ||||| || ||||| | |||||||||||| Sbjct: 275 ctcttcggagtgagggaaccggggttctatggcgcaatcgacattgtctctggacagtca 334 Query: 672 attttgtttgctccaaggttgccacctgactatgctgtctggatgggtgaaataaaacca 731 |||||||| |||||||||||||| |||| |||||||| |||||||||||||| || ||| Sbjct: 335 attttgttctctccaaggttgccagctgattatgctgtgtggatgggtgaaattaagcca 394 Query: 732 ctgtctcattttaaggatagatacaaggtcgatttggtcttctatgtcgatgagattgtg 791 ||||| ||||||||||||| ||||||||||| |||| |||||||| |||||||| Sbjct: 395 ttgtcttattttaaggataggtacaaggtcgacatggtgttctatgttgatgagatcaca 454 Query: 792 caggttctgcaagatcgatttagtgagcatgggaagcctcttttgtttctcttgtatgga 851 || |||||||| || || || || || ||||| ||||||||| ||||| | || |||||| Sbjct: 455 caagttctgcaggaccgtttcagcgatcatggaaagcctcttctgtttgtgttatatgga 514 Query: 852 aagagtgctgacagcggaaattactcaaagcctgctagttttgaagggatagagaagttt 911 || | | | |||||||||||||| |||||||||||||||||||| ||||| |||||||| Sbjct: 515 aaaaatacagacagcggaaattattcaaagcctgctagttttgaggggatggagaagttc 574 Query: 912 gaaaccgatttgggtacgctccaccctatcttaactgaatgccgtgttatcaaatctgaa 971 || ||||| | |||| || |||||||| ||||||||||||||||||||||||||||| Sbjct: 575 gattccgatctaagtacacttcaccctattttaactgaatgccgtgttatcaaatctgac 634 Query: 972 atggagcttgccctcattcaatatgctaatgatgttagctcagaagcacacattgaggtt 1031 |||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| Sbjct: 635 atggagcttgcccttattcagtatgctaatgatgtgagctctgaagctcacattgaggtc 694 Query: 1032 atgagacaggcaaaaccaggcatgaaggaatatcagttagaaagcatatttcttcatcat 1091 ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 695 atgagacgagcaaaaccaggcatgaaggaataccagttagaaagcatctttcttcatcat 754 Query: 1092 tcttataggcatggagcctgtcgacattactcctacacatgtatatgcgctactggagag 1151 ||||| | |||| | ||||||||||| ||| || ||||||||||||||||||||||| Sbjct: 755 gtttatatgtatgggggctgtcgacattgctcttatacatgtatatgcgctactggagaa 814 Query: 1152 aacagttctattcttcattatggacatacggctgctccaaatgaccggacactgaatgat 1211 || |||||| ||||||||||||||||| | || || ||||||||| |||| ||||||||| Sbjct: 815 aatagttctgttcttcattatggacatgctgcagcaccaaatgacaggaccctgaatgat 874 Query: 1212 ggagacatggctctaatggacatgggagctgaatataatttctatggctctgacatcaca 1271 ||||||||||| |||||||||||||||| |||||| ||| |||||| || || || ||| Sbjct: 875 ggagacatggcactaatggacatgggaggtgaataccattgctatggatccgatataaca 934 Query: 1272 tgttcataccccataaatggaaagttcaacagcaaccagacaatagtatacaatgctgtc 1331 || |||||||| |||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct: 935 tgctcataccctataaatgggaaattcaacagcaatcagacaatagtatacaatgctgtc 994 Query: 1332 cttaaggctcataatgctgtcatatcacacatgcagcctggagtaaaatggatcgatatg 1391 |||||||||||||||||||||||| ||||||||| |||||||||||| ||| | |||||| Sbjct: 995 cttaaggctcataatgctgtcatagcacacatgcggcctggagtaaattggttggatatg 1054 Query: 1392 cacaagctggccgagcagacaatacttgaatctctcaagaaagaaaagattatccatggt 1451 ||||| || || |||||||| |||||||||||||||||||| |||| ||| ||||||| Sbjct: 1055 cacaaacttgcggagcagactatacttgaatctctcaagaacgaaagaattctccatggg 1114 Query: 1452 gatattgctgatatgatggctcgaaggttgggtgctgttttcatgcctcatggtcttggg 1511 ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1115 gatgtcactgatatgatggctcaaaggttgggtgctgttttcatgcctcatggtcttgga 1174 Query: 1512 cacttgcttggaattgacacccatgatcccggaggctaccctgagggcttagagaggcca 1571 ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 1175 cacttgcttggtattgacacccatgatcctgggggctatcctgagggcttagagaggcca 1234 Query: 1572 aatgagccaggactgagctccttgcgtaccataagagaacttaaagaagggatggttatt 1631 || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 1235 aaggagccaggactgagctccttgcggaccataagagaacttaaagaaggcatggttatc 1294 Query: 1632 acggttgagccaggctgttatttcatcgatgctttgctgaggcctgccagagatgatcca 1691 || ||||||||||| || |||||||| ||||||||||||| || ||||| ||||||||| Sbjct: 1295 acagttgagccaggttgctatttcattgatgctttgctgataccagccagggatgatcca 1354 Query: 1692 atttcctcaaagttcttcaactgggaagagattgagaagtacaaaagttttggtggtgtt 1751 ||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct: 1355 gtttcctcgaagttcttcaactgggaagagattgaaaaatacaaaagctttggtggtgtt 1414 Query: 1752 cgtattgaaagtgatctgtatgtgacagggcaaggatgcaagaacctgacgaattgcccc 1811 || ||||| ||||| |||||||||| | ||| ||||||||||||||||| || |||||| Sbjct: 1415 cggattgagagtgacgtgtatgtgacggcgcatggatgcaagaacctgacaaactgcccc 1474 Query: 1812 cgggagatctgggaaattgaagcagtaatggctggcgcgccatggcct 1859 |||||| ||||||||| ||||| ||||||||||| |||||||||||| Sbjct: 1475 agggagacctgggaaatcgaagctgtaatggctggtgcgccatggcct 1522
>dbj|AK064268.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E02, full insert sequence Length = 1951 Score = 1372 bits (692), Expect = 0.0 Identities = 1244/1428 (87%) Strand = Plus / Plus Query: 432 gaggtgcccatggagctgcacacaggcaaccgtgaccgcctgataaccgcgcttcgcgcc 491 ||||||||||||||||||||| | |||||||| || ||||| | ||||||| |||||| Sbjct: 95 gaggtgcccatggagctgcacgccggcaaccgcgatcgcctcgtcgccgcgctccgcgcc 154 Query: 492 cacctctccgccaccgccagccctccccgtggcctcgctctcctccagggtggcgaggag 551 |||||||||||| ||| | |||| | ||| ||||||| ||||||||||| || |||||| Sbjct: 155 cacctctccgcctccggccgccccctccgcggcctcgtcctcctccagggaggggaggag 214 Query: 552 cagacacgacattgcactgatcatcttgagctatttaggcaggagagctactttgcttat 611 ||||| || | ||||| ||||| || ||||| || |||||||||||||||||||||||| Sbjct: 215 cagacgcggtactgcaccgatcacctcgagctcttcaggcaggagagctactttgcttat 274 Query: 612 ctttttggagtgcgcgagccagggttctacggcgctatagacatcgcctctggacagtcc 671 || || |||||| | || || |||||||| ||||| || ||||| | |||||||||||| Sbjct: 275 ctcttcggagtgagggaaccggggttctatggcgcaatcgacattgtctctggacagtca 334 Query: 672 attttgtttgctccaaggttgccacctgactatgctgtctggatgggtgaaataaaacca 731 |||||||| |||||||||||||| |||| |||||||| |||||||||||||| || ||| Sbjct: 335 attttgttctctccaaggttgccagctgattatgctgtgtggatgggtgaaattaagcca 394 Query: 732 ctgtctcattttaaggatagatacaaggtcgatttggtcttctatgtcgatgagattgtg 791 ||||| ||||||||||||| ||||||||||| |||| |||||||| |||||||| Sbjct: 395 ttgtcttattttaaggataggtacaaggtcgacatggtgttctatgttgatgagatcaca 454 Query: 792 caggttctgcaagatcgatttagtgagcatgggaagcctcttttgtttctcttgtatgga 851 || |||||||| || || || || || || || ||||||||| ||||| | || |||||| Sbjct: 455 caagttctgcaggaccgtttcagcgatcacggaaagcctcttctgtttgtgttatatgga 514 Query: 852 aagagtgctgacagcggaaattactcaaagcctgctagttttgaagggatagagaagttt 911 || | | | |||||||||||||| |||||||||||||||||||| ||||| |||||||| Sbjct: 515 aaaaatacagacagcggaaattattcaaagcctgctagttttgaggggatggagaagttc 574 Query: 912 gaaaccgatttgggtacgctccaccctatcttaactgaatgccgtgttatcaaatctgaa 971 || ||||| | |||| || |||||||| ||||||||||||||||||||||||||||| Sbjct: 575 gattccgatctaagtacacttcaccctattttaactgaatgccgtgttatcaaatctgac 634 Query: 972 atggagcttgccctcattcaatatgctaatgatgttagctcagaagcacacattgaggtt 1031 |||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| Sbjct: 635 atggagcttgcccttattcagtatgctaatgatgtgagctctgaagctcacattgaggtc 694 Query: 1032 atgagacaggcaaaaccaggcatgaaggaatatcagttagaaagcatatttcttcatcat 1091 ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 695 atgagacgagcaaaaccaggcatgaaggaataccagttagaaagcatctttcttcatcat 754 Query: 1092 tcttataggcatggagcctgtcgacattactcctacacatgtatatgcgctactggagag 1151 ||||| | |||| | ||||||||||| ||| || ||||||||||||||||||||||| Sbjct: 755 gtttatatgtatgggggctgtcgacattgctcttatacatgtatatgcgctactggagaa 814 Query: 1152 aacagttctattcttcattatggacatacggctgctccaaatgaccggacactgaatgat 1211 || |||||| ||||||||||||||||| | || || ||||||||| |||| ||||||||| Sbjct: 815 aatagttctgttcttcattatggacatgctgcagcaccaaatgacaggaccctgaatgat 874 Query: 1212 ggagacatggctctaatggacatgggagctgaatataatttctatggctctgacatcaca 1271 ||||||||||| |||||||||||||||| |||||| ||| |||||| || || || ||| Sbjct: 875 ggagacatggcactaatggacatgggaggtgaataccattgctatggatccgatataaca 934 Query: 1272 tgttcataccccataaatggaaagttcaacagcaaccagacaatagtatacaatgctgtc 1331 || |||||||| |||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct: 935 tgctcataccctataaatgggaaattcaacagcaatcagacaatagtatacaatgctgtc 994 Query: 1332 cttaaggctcataatgctgtcatatcacacatgcagcctggagtaaaatggatcgatatg 1391 |||||||||||||||||||||||| ||||||||| |||||||||||| ||| | |||||| Sbjct: 995 cttaaggctcataatgctgtcatagcacacatgcggcctggagtaaattggttggatatg 1054 Query: 1392 cacaagctggccgagcagacaatacttgaatctctcaagaaagaaaagattatccatggt 1451 ||||| || || |||||||| |||||||||||||||||||| |||| ||| ||||||| Sbjct: 1055 cacaaacttgcggagcagactatacttgaatctctcaagaacgaaagaattctccatggg 1114 Query: 1452 gatattgctgatatgatggctcgaaggttgggtgctgttttcatgcctcatggtcttggg 1511 ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1115 gatgtcactgatatgatggctcaaaggttgggtgctgttttcatgcctcatggtcttgga 1174 Query: 1512 cacttgcttggaattgacacccatgatcccggaggctaccctgagggcttagagaggcca 1571 ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 1175 cacttgcttggtattgacacccatgatcctgggggctatcctgagggcttagagaggcca 1234 Query: 1572 aatgagccaggactgagctccttgcgtaccataagagaacttaaagaagggatggttatt 1631 || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 1235 aaggagccaggactgagctccttgcggaccataagagaacttaaagaaggcatggttatc 1294 Query: 1632 acggttgagccaggctgttatttcatcgatgctttgctgaggcctgccagagatgatcca 1691 || ||||||||||| || |||||||| ||||||||||||| || ||||| ||||||||| Sbjct: 1295 acagttgagccaggttgctatttcattgatgctttgctgataccagccagggatgatcca 1354 Query: 1692 atttcctcaaagttcttcaactgggaagagattgagaagtacaaaagttttggtggtgtt 1751 ||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct: 1355 gtttcctcgaagttcttcaactgggaagagattgaaaaatacaaaagctttggtggtgtt 1414 Query: 1752 cgtattgaaagtgatctgtatgtgacagggcaaggatgcaagaacctgacgaattgcccc 1811 || ||||| ||||| |||||||||| | ||| ||||||||||||||||| || |||||| Sbjct: 1415 cggattgagagtgacgtgtatgtgacggcgcatggatgcaagaacctgacaaactgcccc 1474 Query: 1812 cgggagatctgggaaattgaagcagtaatggctggcgcgccatggcct 1859 |||||| ||||||||| ||||| ||||||||||| |||||||||||| Sbjct: 1475 agggagacctgggaaatcgaagctgtaatggctggtgcgccatggcct 1522
>gb|AY105932.1| Zea mays PCO081178 mRNA sequence Length = 1142 Score = 696 bits (351), Expect = 0.0 Identities = 723/847 (85%) Strand = Plus / Plus Query: 1014 gaagcacacattgaggttatgagacaggcaaaaccaggcatgaaggaatatcagttagaa 1073 ||||| ||||||||||||||||||| |||| |||||||||||||||||||| |||||| Sbjct: 12 gaagctcacattgaggttatgagacgagcaaggccaggcatgaaggaatatcaattagaa 71 Query: 1074 agcatatttcttcatcattcttataggcatggagcctgtcgacattactcctacacatgt 1133 || || || ||||| ||| ||||| | |||||| || ||||||| ||| || |||||| Sbjct: 72 agtatcttccttcaccatgtttatatgtatggaggttgccgacattgctcttatacatgt 131 Query: 1134 atatgcgctactggagagaacagttctattcttcattatggacatacggctgctccaaat 1193 ||||| ||||||||||| || ||| || |||| |||||||||||| |||| ||||||||| Sbjct: 132 atatgtgctactggagataatagtgctgttctacattatggacatgcggcagctccaaat 191 Query: 1194 gaccggacactgaatgatggagacatggctctaatggacatgggagctgaatataatttc 1253 |||||||| ||||||||||||||||||| |||||||| |||||||||||||| ||||| Sbjct: 192 gaccggactttgaatgatggagacatggcactaatggatatgggagctgaataccatttc 251 Query: 1254 tatggctctgacatcacatgttcataccccataaatggaaagttcaacagcaaccagaca 1313 ||||| ||||| |||||||| |||||||| |||||||| || |||||||| | |||||| Sbjct: 252 tatggatctgatatcacatgctcataccctataaatgggaaattcaacagaagtcagaca 311 Query: 1314 atagtatacaatgctgtccttaaggctcataatgctgtcatatcacacatgcagcctgga 1373 ||| ||||||||||||| |||||||||||||||||||| |||||| |||||| ||||||| Sbjct: 312 ataatatacaatgctgtgcttaaggctcataatgctgttatatcagacatgcggcctgga 371 Query: 1374 gtaaaatggatcgatatgcacaagctggccgagcagacaatacttgaatctctcaagaaa 1433 || || ||||| ||||||||||| | || || | | |||||||||||||||||| ||| Sbjct: 372 gttaattggatggatatgcacaaattagcagaacgggcaatacttgaatctctcaggaag 431 Query: 1434 gaaaagattatccatggtgatattgctgatatgatggctcgaaggttgggtgctgttttc 1493 ||| | ||| | || || ||| ||| |||||||||||||| |||||| || ||||||||| Sbjct: 432 gaacaaattgtacaaggggatgttgatgatatgatggctcaaaggttaggggctgttttc 491 Query: 1494 atgcctcatggtcttgggcacttgcttggaattgacacccatgatcccggaggctaccct 1553 ||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||| Sbjct: 492 atgcctcatggtcttggccacttacttggtattgacacccatgatccaggaggctaccct 551 Query: 1554 gagggcttagagaggccaaatgagccaggactgagctccttgcgtaccataagagaactt 1613 ||||| || |||||||| || || |||||||||| ||||||||| |||| ||||||||| Sbjct: 552 gagggattggagaggcccaaggatccaggactgaactccttgcggaccacaagagaactg 611 Query: 1614 aaagaagggatggttattacggttgagccaggctgttatttcatcgatgctttgctgagg 1673 |||||||| |||||||| || || ||||||||||| |||||||| ||||||||||| | Sbjct: 612 aaagaaggaatggttatcacagtggagccaggctgctatttcattgatgctttgctaact 671 Query: 1674 cctgccagagatgatccaatttcctcaaagttcttcaactgggaagagattgagaagtac 1733 | || ||||||||||||||||||||||||||||||||| ||||| |||| ||||| Sbjct: 672 aaaacaagggatgatccaatttcctcaaagttcttcaactggcaagaggttgaaaagtat 731 Query: 1734 aaaagttttggtggtgttcgtattgaaagtgatctgtatgtgacagggcaaggatgcaag 1793 ||||| |||||||| ||||| |||||||||||| |||||||||| | ||||||||| | Sbjct: 732 aaaagctttggtggcgttcgcattgaaagtgatgtgtatgtgacggctcaaggatgccgg 791 Query: 1794 aacctgacgaattgcccccgggagatctgggaaattgaagcagtaatggctggcgcgcca 1853 ||||| || || ||||| | |||| |||||| || || || |||||||||||||| ||| Sbjct: 792 aacctcacaaactgcccgagagagacctgggagatcgaggctgtaatggctggcgcacca 851 Query: 1854 tggcctc 1860 ||||||| Sbjct: 852 tggcctc 858
>gb|AY104813.1| Zea mays PCO127816 mRNA sequence Length = 613 Score = 276 bits (139), Expect = 3e-70 Identities = 469/575 (81%), Gaps = 3/575 (0%) Strand = Plus / Plus Query: 434 ggtgcccatggagctgcacacaggcaaccgtgaccgcctgataaccgcgcttcgcgccca 493 |||||| |||||||| ||| | |||||||| |||||||| | ||||||| |||| ||| Sbjct: 39 ggtgcctatggagcttcacgccggcaaccgcgaccgcctcgtcgccgcgctccgcggcca 98 Query: 494 cctctccgccaccgccagccctccccgtggcctcgctctcctccagggtggcgaggagca 553 | |||||||| |||| |||| | || ||||||| ||||| ||||| || |||||| | Sbjct: 99 catctccgcctccgcgcgcccgctccacggcctcgtcctccttcagggcggggaggagaa 158 Query: 554 gacacgacattgcactgatcatcttgagctatttaggcaggagagctactttgcttatct 613 |||||| | ||||| ||||| || ||||| || ||||||||||||||||| || ||||| Sbjct: 159 gacacggtactgcaccgatcacctcgagctcttcaggcaggagagctacttcgcctatct 218 Query: 614 ttttggagtgcgcgagccagggttctacggcgctatagacatcgcctctggacagtccat 673 |||||||||| || ||||||||||||||||| || |||||||||||||||||||| || Sbjct: 219 ctttggagtgcaggaaccagggttctacggcgcaattgacatcgcctctggacagtcaat 278 Query: 674 tttgtttgctccaaggttgccacctgactatgctgtctggatgggtgaaataaaaccact 733 |||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||| | Sbjct: 279 tttgttcgctccaagattgccagctgactatgctgtttggatgggtgaaataaaaccttt 338 Query: 734 gtctcattttaaggatagatacaaggtcgatttggtcttctatgtcgatgagattgtgca 793 ||| | || | ||||| ||||||||| ||| ||||||||||||| |||||||||| Sbjct: 339 gtcgtacttcagggatacatacaaggttgatatggtcttctatgttgatgagattgcaag 398 Query: 794 ggttctgcaagatcgatttagtg-agcatgggaagcctcttttgtttctcttgtatggaa 852 |||| ||||||||| |||| | | | ||||| ||||||||| ||||||| | |||| | Sbjct: 399 ggttgtgcaagatc-atttcgggaaccatggaaagcctcttctgtttctgctacatggga 457 Query: 853 agagtgctgacagcggaaattactcaaagcctgctagttttgaagggatagagaagtttg 912 || | ||||| ||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct: 458 ggaatactgactctggaaatttctcaaagcctgctagttttgaggggatggagaactttg 517 Query: 913 aaaccgatttgggtacgctccaccctatcttaactgaatgccgtgttatcaaatctgaaa 972 | || ||||| ||| || || || || ||||| ||||| ||||| || |||||||| Sbjct: 518 atactgatttaattacacttcatccaattttaaccgaatgtcgtgtgattaaatctgatc 577 Query: 973 t-ggagcttgccctcattcaatatgctaatgatgt 1006 | ||||| ||| ||||| | |||||||||||||| Sbjct: 578 tgggagcctgctctcatccggtatgctaatgatgt 612
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 153 bits (77), Expect = 3e-33 Identities = 125/141 (88%) Strand = Plus / Plus Query: 1625 ggttattacggttgagccaggctgttatttcatcgatgctttgctgaggcctgccagaga 1684 |||||| || ||||||||||| || |||||||| ||||||||||||| || ||||| || Sbjct: 6990823 ggttatcacagttgagccaggttgctatttcattgatgctttgctgataccagccaggga 6990882 Query: 1685 tgatccaatttcctcaaagttcttcaactgggaagagattgagaagtacaaaagttttgg 1744 ||||||| ||||||| |||||||||||||||||||||||||| || |||||||| ||||| Sbjct: 6990883 tgatccagtttcctcgaagttcttcaactgggaagagattgaaaaatacaaaagctttgg 6990942 Query: 1745 tggtgttcgtattgaaagtga 1765 ||||||||| ||||| ||||| Sbjct: 6990943 tggtgttcggattgagagtga 6990963 Score = 149 bits (75), Expect = 5e-32 Identities = 93/99 (93%) Strand = Plus / Plus Query: 1459 ctgatatgatggctcgaaggttgggtgctgttttcatgcctcatggtcttgggcacttgc 1518 ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 6989797 ctgatatgatggctcaaaggttgggtgctgttttcatgcctcatggtcttggacacttgc 6989856 Query: 1519 ttggaattgacacccatgatcccggaggctaccctgagg 1557 |||| ||||||||||||||||| || ||||| ||||||| Sbjct: 6989857 ttggtattgacacccatgatcctgggggctatcctgagg 6989895 Score = 139 bits (70), Expect = 4e-29 Identities = 91/98 (92%) Strand = Plus / Plus Query: 933 caccctatcttaactgaatgccgtgttatcaaatctgaaatggagcttgccctcattcaa 992 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 6986244 caccctattttaactgaatgccgtgttatcaaatctgacatggagcttgcccttattcag 6986303 Query: 993 tatgctaatgatgttagctcagaagcacacattgaggt 1030 |||||||||||||| ||||| ||||| ||||||||||| Sbjct: 6986304 tatgctaatgatgtgagctctgaagctcacattgaggt 6986341 Score = 135 bits (68), Expect = 7e-28 Identities = 110/124 (88%) Strand = Plus / Plus Query: 1027 aggttatgagacaggcaaaaccaggcatgaaggaatatcagttagaaagcatatttcttc 1086 |||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 6986639 aggtcatgagacgagcaaaaccaggcatgaaggaataccagttagaaagcatctttcttc 6986698 Query: 1087 atcattcttataggcatggagcctgtcgacattactcctacacatgtatatgcgctactg 1146 ||||| ||||| | |||| | ||||||||||| ||| || ||||||||||||||||||| Sbjct: 6986699 atcatgtttatatgtatgggggctgtcgacattgctcttatacatgtatatgcgctactg 6986758 Query: 1147 gaga 1150 |||| Sbjct: 6986759 gaga 6986762 Score = 125 bits (63), Expect = 7e-25 Identities = 72/75 (96%) Strand = Plus / Plus Query: 1555 agggcttagagaggccaaatgagccaggactgagctccttgcgtaccataagagaactta 1614 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct: 6990036 agggcttagagaggccaaaggagccaggactgagctccttgcggaccataagagaactta 6990095 Query: 1615 aagaagggatggtta 1629 ||||||| ||||||| Sbjct: 6990096 aagaaggcatggtta 6990110 Score = 103 bits (52), Expect = 2e-18 Identities = 67/72 (93%) Strand = Plus / Plus Query: 1326 gctgtccttaaggctcataatgctgtcatatcacacatgcagcctggagtaaaatggatc 1385 |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| | Sbjct: 6989264 gctgtccttaaggctcataatgctgtcatagcacacatgcggcctggagtaaattggttg 6989323 Query: 1386 gatatgcacaag 1397 |||||||||||| Sbjct: 6989324 gatatgcacaag 6989335 Score = 101 bits (51), Expect = 1e-17 Identities = 81/91 (89%) Strand = Plus / Plus Query: 1769 gtatgtgacagggcaaggatgcaagaacctgacgaattgcccccgggagatctgggaaat 1828 ||||||||| | ||| ||||||||||||||||| || |||||| |||||| ||||||||| Sbjct: 6992037 gtatgtgacggcgcatggatgcaagaacctgacaaactgccccagggagacctgggaaat 6992096 Query: 1829 tgaagcagtaatggctggcgcgccatggcct 1859 ||||| ||||||||||| |||||||||||| Sbjct: 6992097 cgaagctgtaatggctggtgcgccatggcct 6992127 Score = 97.6 bits (49), Expect = 2e-16 Identities = 79/89 (88%) Strand = Plus / Plus Query: 659 ctctggacagtccattttgtttgctccaaggttgccacctgactatgctgtctggatggg 718 |||||||||||| |||||||| |||||||||||||| |||| |||||||| |||||||| Sbjct: 6985582 ctctggacagtcaattttgttctctccaaggttgccagctgattatgctgtgtggatggg 6985641 Query: 719 tgaaataaaaccactgtctcattttaagg 747 |||||| || ||| ||||| ||||||||| Sbjct: 6985642 tgaaattaagccattgtcttattttaagg 6985670 Score = 93.7 bits (47), Expect = 2e-15 Identities = 125/151 (82%) Strand = Plus / Plus Query: 745 aggatagatacaaggtcgatttggtcttctatgtcgatgagattgtgcaggttctgcaag 804 ||||||| ||||||||||| |||| |||||||| |||||||| || |||||||| | Sbjct: 6985752 aggataggtacaaggtcgacatggtgttctatgttgatgagatcacacaagttctgcagg 6985811 Query: 805 atcgatttagtgagcatgggaagcctcttttgtttctcttgtatggaaagagtgctgaca 864 | || || || || ||||| ||||||||| ||||| | || |||||||| | | | |||| Sbjct: 6985812 accgtttcagcgatcatggaaagcctcttctgtttgtgttatatggaaaaaatacagaca 6985871 Query: 865 gcggaaattactcaaagcctgctagttttga 895 |||||||||| |||||||||||||||||||| Sbjct: 6985872 gcggaaattattcaaagcctgctagttttga 6985902 Score = 81.8 bits (41), Expect = 9e-12 Identities = 92/109 (84%) Strand = Plus / Plus Query: 432 gaggtgcccatggagctgcacacaggcaaccgtgaccgcctgataaccgcgcttcgcgcc 491 ||||||||||||||||||||| | |||||||| || ||||| | ||||||| |||||| Sbjct: 6984536 gaggtgcccatggagctgcacgccggcaaccgcgatcgcctcgtcgccgcgctccgcgcc 6984595 Query: 492 cacctctccgccaccgccagccctccccgtggcctcgctctcctccagg 540 |||||||||||| ||| | |||| | ||| ||||||| |||||||||| Sbjct: 6984596 cacctctccgcctccggccgccccctccgcggcctcgtcctcctccagg 6984644 Score = 79.8 bits (40), Expect = 4e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 1203 ctgaatgatggagacatggctctaatggacatgggagctgaatataatttctatggctct 1262 |||||||||||||||||||| |||||||||||||||| |||||| ||| |||||| || Sbjct: 6987938 ctgaatgatggagacatggcactaatggacatgggaggtgaataccattgctatggatcc 6987997 Query: 1263 gacatcacatgttcataccc 1282 || || ||||| |||||||| Sbjct: 6987998 gatataacatgctcataccc 6988017 Score = 61.9 bits (31), Expect = 8e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 588 aggcaggagagctactttgcttatctttttggagtgcgcgagccagggttctacggcgc 646 |||||||||||||||||||||||||| || |||||| | || || |||||||| ||||| Sbjct: 6984934 aggcaggagagctactttgcttatctcttcggagtgagggaaccggggttctatggcgc 6984992 Score = 61.9 bits (31), Expect = 8e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1284 ataaatggaaagttcaacagcaaccagacaatagtatacaatg 1326 |||||||| || ||||||||||| ||||||||||||||||||| Sbjct: 6989049 ataaatgggaaattcaacagcaatcagacaatagtatacaatg 6989091 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 1404 gagcagacaatacttgaatctctcaagaaagaaaagattatccatgg 1450 |||||||| |||||||||||||||||||| |||| ||| ||||||| Sbjct: 6989628 gagcagactatacttgaatctctcaagaacgaaagaattctccatgg 6989674 Score = 46.1 bits (23), Expect = 0.49 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1154 cagttctattcttcattatggacatacggctgctccaaatgac 1196 ||||||| ||||||||||||||||| | || || ||||||||| Sbjct: 6987282 cagttctgttcttcattatggacatgctgcagcaccaaatgac 6987324 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 cccacctctccgccaccgcca 510 ||||||||||||||||||||| Sbjct: 30324491 cccacctctccgccaccgcca 30324471
>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470A03 Length = 133167 Score = 153 bits (77), Expect = 3e-33 Identities = 125/141 (88%) Strand = Plus / Plus Query: 1625 ggttattacggttgagccaggctgttatttcatcgatgctttgctgaggcctgccagaga 1684 |||||| || ||||||||||| || |||||||| ||||||||||||| || ||||| || Sbjct: 84445 ggttatcacagttgagccaggttgctatttcattgatgctttgctgataccagccaggga 84504 Query: 1685 tgatccaatttcctcaaagttcttcaactgggaagagattgagaagtacaaaagttttgg 1744 ||||||| ||||||| |||||||||||||||||||||||||| || |||||||| ||||| Sbjct: 84505 tgatccagtttcctcgaagttcttcaactgggaagagattgaaaaatacaaaagctttgg 84564 Query: 1745 tggtgttcgtattgaaagtga 1765 ||||||||| ||||| ||||| Sbjct: 84565 tggtgttcggattgagagtga 84585 Score = 149 bits (75), Expect = 5e-32 Identities = 93/99 (93%) Strand = Plus / Plus Query: 1459 ctgatatgatggctcgaaggttgggtgctgttttcatgcctcatggtcttgggcacttgc 1518 ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 83419 ctgatatgatggctcaaaggttgggtgctgttttcatgcctcatggtcttggacacttgc 83478 Query: 1519 ttggaattgacacccatgatcccggaggctaccctgagg 1557 |||| ||||||||||||||||| || ||||| ||||||| Sbjct: 83479 ttggtattgacacccatgatcctgggggctatcctgagg 83517 Score = 139 bits (70), Expect = 4e-29 Identities = 91/98 (92%) Strand = Plus / Plus Query: 933 caccctatcttaactgaatgccgtgttatcaaatctgaaatggagcttgccctcattcaa 992 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 79866 caccctattttaactgaatgccgtgttatcaaatctgacatggagcttgcccttattcag 79925 Query: 993 tatgctaatgatgttagctcagaagcacacattgaggt 1030 |||||||||||||| ||||| ||||| ||||||||||| Sbjct: 79926 tatgctaatgatgtgagctctgaagctcacattgaggt 79963 Score = 135 bits (68), Expect = 7e-28 Identities = 110/124 (88%) Strand = Plus / Plus Query: 1027 aggttatgagacaggcaaaaccaggcatgaaggaatatcagttagaaagcatatttcttc 1086 |||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 80261 aggtcatgagacgagcaaaaccaggcatgaaggaataccagttagaaagcatctttcttc 80320 Query: 1087 atcattcttataggcatggagcctgtcgacattactcctacacatgtatatgcgctactg 1146 ||||| ||||| | |||| | ||||||||||| ||| || ||||||||||||||||||| Sbjct: 80321 atcatgtttatatgtatgggggctgtcgacattgctcttatacatgtatatgcgctactg 80380 Query: 1147 gaga 1150 |||| Sbjct: 80381 gaga 80384 Score = 125 bits (63), Expect = 7e-25 Identities = 72/75 (96%) Strand = Plus / Plus Query: 1555 agggcttagagaggccaaatgagccaggactgagctccttgcgtaccataagagaactta 1614 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct: 83658 agggcttagagaggccaaaggagccaggactgagctccttgcggaccataagagaactta 83717 Query: 1615 aagaagggatggtta 1629 ||||||| ||||||| Sbjct: 83718 aagaaggcatggtta 83732 Score = 103 bits (52), Expect = 2e-18 Identities = 67/72 (93%) Strand = Plus / Plus Query: 1326 gctgtccttaaggctcataatgctgtcatatcacacatgcagcctggagtaaaatggatc 1385 |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| | Sbjct: 82886 gctgtccttaaggctcataatgctgtcatagcacacatgcggcctggagtaaattggttg 82945 Query: 1386 gatatgcacaag 1397 |||||||||||| Sbjct: 82946 gatatgcacaag 82957 Score = 101 bits (51), Expect = 1e-17 Identities = 81/91 (89%) Strand = Plus / Plus Query: 1769 gtatgtgacagggcaaggatgcaagaacctgacgaattgcccccgggagatctgggaaat 1828 ||||||||| | ||| ||||||||||||||||| || |||||| |||||| ||||||||| Sbjct: 85659 gtatgtgacggcgcatggatgcaagaacctgacaaactgccccagggagacctgggaaat 85718 Query: 1829 tgaagcagtaatggctggcgcgccatggcct 1859 ||||| ||||||||||| |||||||||||| Sbjct: 85719 cgaagctgtaatggctggtgcgccatggcct 85749 Score = 97.6 bits (49), Expect = 2e-16 Identities = 79/89 (88%) Strand = Plus / Plus Query: 659 ctctggacagtccattttgtttgctccaaggttgccacctgactatgctgtctggatggg 718 |||||||||||| |||||||| |||||||||||||| |||| |||||||| |||||||| Sbjct: 79204 ctctggacagtcaattttgttctctccaaggttgccagctgattatgctgtgtggatggg 79263 Query: 719 tgaaataaaaccactgtctcattttaagg 747 |||||| || ||| ||||| ||||||||| Sbjct: 79264 tgaaattaagccattgtcttattttaagg 79292 Score = 93.7 bits (47), Expect = 2e-15 Identities = 125/151 (82%) Strand = Plus / Plus Query: 745 aggatagatacaaggtcgatttggtcttctatgtcgatgagattgtgcaggttctgcaag 804 ||||||| ||||||||||| |||| |||||||| |||||||| || |||||||| | Sbjct: 79374 aggataggtacaaggtcgacatggtgttctatgttgatgagatcacacaagttctgcagg 79433 Query: 805 atcgatttagtgagcatgggaagcctcttttgtttctcttgtatggaaagagtgctgaca 864 | || || || || ||||| ||||||||| ||||| | || |||||||| | | | |||| Sbjct: 79434 accgtttcagcgatcatggaaagcctcttctgtttgtgttatatggaaaaaatacagaca 79493 Query: 865 gcggaaattactcaaagcctgctagttttga 895 |||||||||| |||||||||||||||||||| Sbjct: 79494 gcggaaattattcaaagcctgctagttttga 79524 Score = 81.8 bits (41), Expect = 9e-12 Identities = 92/109 (84%) Strand = Plus / Plus Query: 432 gaggtgcccatggagctgcacacaggcaaccgtgaccgcctgataaccgcgcttcgcgcc 491 ||||||||||||||||||||| | |||||||| || ||||| | ||||||| |||||| Sbjct: 78158 gaggtgcccatggagctgcacgccggcaaccgcgatcgcctcgtcgccgcgctccgcgcc 78217 Query: 492 cacctctccgccaccgccagccctccccgtggcctcgctctcctccagg 540 |||||||||||| ||| | |||| | ||| ||||||| |||||||||| Sbjct: 78218 cacctctccgcctccggccgccccctccgcggcctcgtcctcctccagg 78266 Score = 79.8 bits (40), Expect = 4e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 1203 ctgaatgatggagacatggctctaatggacatgggagctgaatataatttctatggctct 1262 |||||||||||||||||||| |||||||||||||||| |||||| ||| |||||| || Sbjct: 81560 ctgaatgatggagacatggcactaatggacatgggaggtgaataccattgctatggatcc 81619 Query: 1263 gacatcacatgttcataccc 1282 || || ||||| |||||||| Sbjct: 81620 gatataacatgctcataccc 81639 Score = 61.9 bits (31), Expect = 8e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 588 aggcaggagagctactttgcttatctttttggagtgcgcgagccagggttctacggcgc 646 |||||||||||||||||||||||||| || |||||| | || || |||||||| ||||| Sbjct: 78556 aggcaggagagctactttgcttatctcttcggagtgagggaaccggggttctatggcgc 78614 Score = 61.9 bits (31), Expect = 8e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1284 ataaatggaaagttcaacagcaaccagacaatagtatacaatg 1326 |||||||| || ||||||||||| ||||||||||||||||||| Sbjct: 82671 ataaatgggaaattcaacagcaatcagacaatagtatacaatg 82713 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 1404 gagcagacaatacttgaatctctcaagaaagaaaagattatccatgg 1450 |||||||| |||||||||||||||||||| |||| ||| ||||||| Sbjct: 83250 gagcagactatacttgaatctctcaagaacgaaagaattctccatgg 83296 Score = 46.1 bits (23), Expect = 0.49 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1154 cagttctattcttcattatggacatacggctgctccaaatgac 1196 ||||||| ||||||||||||||||| | || || ||||||||| Sbjct: 80904 cagttctgttcttcattatggacatgctgcagcaccaaatgac 80946
>gb|AC174302.25| Medicago truncatula clone mth2-96b5, complete sequence Length = 117327 Score = 52.0 bits (26), Expect = 0.008 Identities = 62/74 (83%) Strand = Plus / Minus Query: 1479 ttgggtgctgttttcatgcctcatggtcttgggcacttgcttggaattgacacccatgat 1538 |||||| || |||| ||||| |||||||| ||||| || ||||| || ||||| ||||| Sbjct: 117069 ttgggtcctatttttatgccgcatggtctggggcatttacttggtatagacacacatgac 117010 Query: 1539 cccggaggctaccc 1552 || ||||||||||| Sbjct: 117009 cctggaggctaccc 116996
>dbj|AK227089.1| Arabidopsis thaliana mRNA for putative prolidase, complete cds, clone: RAFL09-70-M08 Length = 1627 Score = 52.0 bits (26), Expect = 0.008 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1479 ttgggtgctgttttcatgcctcatgg 1504 |||||||||||||||||||||||||| Sbjct: 1084 ttgggtgctgttttcatgcctcatgg 1109 Score = 44.1 bits (22), Expect = 2.0 Identities = 85/106 (80%) Strand = Plus / Plus Query: 683 tccaaggttgccacctgactatgctgtctggatgggtgaaataaaaccactgtctcattt 742 |||||||||||| ||| |||||||| ||| |||| || || || ||| |||| ||||| Sbjct: 288 tccaaggttgcctgatgattatgctgtttggttgggagagattaagccattgtcgcattt 347 Query: 743 taaggatagatacaaggtcgatttggtcttctatgtcgatgagatt 788 |||||| | ||| | ||| || |||| |||||||| ||||||||| Sbjct: 348 taaggaaacatatatggttgacatggttttctatgtggatgagatt 393
>ref|NM_119095.2| Arabidopsis thaliana unknown protein (AT4G29500) mRNA, complete cds Length = 714 Score = 52.0 bits (26), Expect = 0.008 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1479 ttgggtgctgttttcatgcctcatgg 1504 |||||||||||||||||||||||||| Sbjct: 154 ttgggtgctgttttcatgcctcatgg 179
>gb|AY136419.1| Arabidopsis thaliana X-Pro dipeptidase-like protein (At4g29500) mRNA, complete cds Length = 1672 Score = 52.0 bits (26), Expect = 0.008 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1479 ttgggtgctgttttcatgcctcatgg 1504 |||||||||||||||||||||||||| Sbjct: 1112 ttgggtgctgttttcatgcctcatgg 1137 Score = 44.1 bits (22), Expect = 2.0 Identities = 85/106 (80%) Strand = Plus / Plus Query: 683 tccaaggttgccacctgactatgctgtctggatgggtgaaataaaaccactgtctcattt 742 |||||||||||| ||| |||||||| ||| |||| || || || ||| |||| ||||| Sbjct: 316 tccaaggttgcctgatgattatgctgtttggttgggagagattaagccattgtcgcattt 375 Query: 743 taaggatagatacaaggtcgatttggtcttctatgtcgatgagatt 788 |||||| | ||| | ||| || |||| |||||||| ||||||||| Sbjct: 376 taaggaaacatatatggttgacatggttttctatgtggatgagatt 421
>emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 71 Length = 200001 Score = 52.0 bits (26), Expect = 0.008 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1479 ttgggtgctgttttcatgcctcatgg 1504 |||||||||||||||||||||||||| Sbjct: 25289 ttgggtgctgttttcatgcctcatgg 25314
>emb|AL079344.1|ATT16L4 Arabidopsis thaliana DNA chromosome 4, BAC clone T16L4 (ESSA project) Length = 88011 Score = 52.0 bits (26), Expect = 0.008 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1479 ttgggtgctgttttcatgcctcatgg 1504 |||||||||||||||||||||||||| Sbjct: 474 ttgggtgctgttttcatgcctcatgg 499
>gb|AC008116.8| Homo sapiens 3p25-26 BAC CTB-187P1 (California Institute of Technology BAC Library) complete sequence Length = 104947 Score = 50.1 bits (25), Expect = 0.032 Identities = 25/25 (100%) Strand = Plus / Plus Query: 277 ctccagcgtcggcacaggcagaagg 301 ||||||||||||||||||||||||| Sbjct: 37096 ctccagcgtcggcacaggcagaagg 37120
>ref|NM_014760.2| Homo sapiens TatD DNase domain containing 2 (TATDN2), mRNA gb|BC090935.1| Homo sapiens TatD DNase domain containing 2, mRNA (cDNA clone MGC:104979 IMAGE:3064714), complete cds Length = 4505 Score = 50.1 bits (25), Expect = 0.032 Identities = 25/25 (100%) Strand = Plus / Plus Query: 277 ctccagcgtcggcacaggcagaagg 301 ||||||||||||||||||||||||| Sbjct: 3028 ctccagcgtcggcacaggcagaagg 3052
>emb|CR620522.1| full-length cDNA clone CS0DL004YG05 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1710 Score = 50.1 bits (25), Expect = 0.032 Identities = 25/25 (100%) Strand = Plus / Plus Query: 277 ctccagcgtcggcacaggcagaagg 301 ||||||||||||||||||||||||| Sbjct: 294 ctccagcgtcggcacaggcagaagg 318
>emb|CR605569.1| full-length cDNA clone CS0DL007YF24 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1813 Score = 50.1 bits (25), Expect = 0.032 Identities = 25/25 (100%) Strand = Plus / Plus Query: 277 ctccagcgtcggcacaggcagaagg 301 ||||||||||||||||||||||||| Sbjct: 360 ctccagcgtcggcacaggcagaagg 384
>dbj|D86972.1| Homo sapiens mRNA for KIAA0218 gene, partial cds Length = 4689 Score = 50.1 bits (25), Expect = 0.032 Identities = 25/25 (100%) Strand = Plus / Plus Query: 277 ctccagcgtcggcacaggcagaagg 301 ||||||||||||||||||||||||| Sbjct: 3235 ctccagcgtcggcacaggcagaagg 3259
>gb|AC022384.5| Homo sapiens chromosome 3 clone RP11-438J1 map 3p, complete sequence Length = 210053 Score = 50.1 bits (25), Expect = 0.032 Identities = 25/25 (100%) Strand = Plus / Plus Query: 277 ctccagcgtcggcacaggcagaagg 301 ||||||||||||||||||||||||| Sbjct: 158964 ctccagcgtcggcacaggcagaagg 158988
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 Length = 1457619 Score = 48.1 bits (24), Expect = 0.12 Identities = 27/28 (96%) Strand = Plus / Plus Query: 1620 gggatggttattacggttgagccaggct 1647 |||||||||||||| ||||||||||||| Sbjct: 1023163 gggatggttattactgttgagccaggct 1023190
>ref|NM_119094.2| Arabidopsis thaliana X-Pro dipeptidase/ metalloexopeptidase/ peptidase (AT4G29490) mRNA, complete cds Length = 1045 Score = 44.1 bits (22), Expect = 2.0 Identities = 85/106 (80%) Strand = Plus / Plus Query: 683 tccaaggttgccacctgactatgctgtctggatgggtgaaataaaaccactgtctcattt 742 |||||||||||| ||| |||||||| ||| |||| || || || ||| |||| ||||| Sbjct: 316 tccaaggttgcctgatgattatgctgtttggttgggagagattaagccattgtcgcattt 375 Query: 743 taaggatagatacaaggtcgatttggtcttctatgtcgatgagatt 788 |||||| | ||| | ||| || |||| |||||||| ||||||||| Sbjct: 376 taaggaaacatatatggttgacatggttttctatgtggatgagatt 421
>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01, complete sequence Length = 122768 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1723 ttgagaagtacaaaagttttggtggt 1748 ||||||||| |||||||||||||||| Sbjct: 104190 ttgagaagtccaaaagttttggtggt 104215
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1723 ttgagaagtacaaaagttttggtggt 1748 ||||||||| |||||||||||||||| Sbjct: 1148579 ttgagaagtccaaaagttttggtggt 1148604 Score = 42.1 bits (21), Expect = 7.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 494 cctctccgccaccgccagccctccc 518 ||||||| ||||||||||||||||| Sbjct: 5061629 cctctccaccaccgccagccctccc 5061605
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1723 ttgagaagtacaaaagttttggtggt 1748 ||||||||| |||||||||||||||| Sbjct: 9496997 ttgagaagtccaaaagttttggtggt 9497022
>emb|BX248359.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 6/8 Length = 349895 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1698 tcaaagttcttcaactgggaag 1719 |||||||||||||||||||||| Sbjct: 338090 tcaaagttcttcaactgggaag 338111
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0424A08 Length = 151294 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1723 ttgagaagtacaaaagttttggtggt 1748 ||||||||| |||||||||||||||| Sbjct: 30426 ttgagaagtccaaaagttttggtggt 30451
>ref|NM_001061361.1| Oryza sativa (japonica cultivar-group) Os05g0184000 (Os05g0184000) mRNA, complete cds Length = 726 Score = 42.1 bits (21), Expect = 7.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 494 cctctccgccaccgccagccctccc 518 ||||||| ||||||||||||||||| Sbjct: 30 cctctccaccaccgccagccctccc 6
>ref|NM_001054533.1| Oryza sativa (japonica cultivar-group) Os02g0728100 (Os02g0728100) mRNA, complete cds Length = 2393 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 490 cccacctctccgccaccgcca 510 ||||||||||||||||||||| Sbjct: 142 cccacctctccgccaccgcca 162
>ref|NM_001051069.1| Oryza sativa (japonica cultivar-group) Os01g0800500 (Os01g0800500) mRNA, complete cds Length = 2166 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 754 acaaggtcgatttggtcttct 774 ||||||||||||||||||||| Sbjct: 1648 acaaggtcgatttggtcttct 1668
>emb|AM167904.1| Bordetella avium 197N complete genome Length = 3732255 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1843 ctggcgcgccatggcctccac 1863 ||||||||||||||||||||| Sbjct: 2593000 ctggcgcgccatggcctccac 2593020
>emb|CR533429.7| Zebrafish DNA sequence from clone CH211-219A4 in linkage group 9, complete sequence Length = 171970 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1519 ttggaattgacacccatgatc 1539 ||||||||||||||||||||| Sbjct: 16733 ttggaattgacacccatgatc 16753
>ref|XM_001070646.1| PREDICTED: Rattus norvegicus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) (predicted) (Ddx11_predicted), mRNA Length = 4831 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1661 tgctttgctgaggcctgccag 1681 ||||||||||||||||||||| Sbjct: 4468 tgctttgctgaggcctgccag 4488
>ref|XM_237570.4| PREDICTED: Rattus norvegicus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) (predicted) (Ddx11_predicted), mRNA Length = 4912 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1661 tgctttgctgaggcctgccag 1681 ||||||||||||||||||||| Sbjct: 4549 tgctttgctgaggcctgccag 4569
>ref|XM_001103305.1| PREDICTED: Macaca mulatta similar to DnaJ homolog, subfamily C, member 9 (LOC707599), mRNA Length = 4187 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1420 aatctctcaagaaagaaaaga 1440 ||||||||||||||||||||| Sbjct: 3498 aatctctcaagaaagaaaaga 3518
>ref|XM_001103228.1| PREDICTED: Macaca mulatta hypothetical protein LOC707485 (LOC707485), mRNA Length = 4980 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1420 aatctctcaagaaagaaaaga 1440 ||||||||||||||||||||| Sbjct: 4276 aatctctcaagaaagaaaaga 4256
>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12, complete sequence Length = 187523 Score = 42.1 bits (21), Expect = 7.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 494 cctctccgccaccgccagccctccc 518 ||||||| ||||||||||||||||| Sbjct: 156214 cctctccaccaccgccagccctccc 156190
>gb|BC072968.1| Xenopus laevis cDNA clone IMAGE:4963467, partial cds Length = 2092 Score = 42.1 bits (21), Expect = 7.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 1480 tgggtgctgttttcatgcctcatggtcttgggcacttgcttggaattga 1528 ||||||| ||||||||||| || |||||||| || || || |||||||| Sbjct: 1358 tgggtgcagttttcatgccacacggtcttggacattttctaggaattga 1406
>gb|AC135311.13| Medicago truncatula clone mth2-27l9, complete sequence Length = 112635 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 tgtgtgttgttttttattctg 363 ||||||||||||||||||||| Sbjct: 9574 tgtgtgttgttttttattctg 9594
>gb|BC054994.1| Xenopus laevis hypothetical protein MGC64570, mRNA (cDNA clone MGC:64570 IMAGE:6880392), complete cds Length = 1830 Score = 42.1 bits (21), Expect = 7.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 1480 tgggtgctgttttcatgcctcatggtcttgggcacttgcttggaattga 1528 ||||||| ||||||||||| || |||||||| || || || |||||||| Sbjct: 1105 tgggtgcagttttcatgccacacggtcttggacatttcctaggaattga 1153
>ref|NM_001008093.1| Xenopus tropicalis pepd protein (pepd), mRNA gb|BC081293.1| Xenopus tropicalis pepd protein, mRNA (cDNA clone MGC:89151 IMAGE:7015948), complete cds Length = 1873 Score = 42.1 bits (21), Expect = 7.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 1480 tgggtgctgttttcatgcctcatggtcttgggcacttgcttggaattga 1528 ||||||| ||||||||||| || |||||||| || || || |||||||| Sbjct: 1140 tgggtgcagttttcatgccacacggtcttggacatttcctaggaattga 1188
>emb|CT025447.2| Xenopus tropicalis finished cDNA, clone TGas107e10 Length = 1835 Score = 42.1 bits (21), Expect = 7.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 1480 tgggtgctgttttcatgcctcatggtcttgggcacttgcttggaattga 1528 ||||||| ||||||||||| || |||||||| || || || |||||||| Sbjct: 1102 tgggtgcagttttcatgccacacggtcttggacatttcctaggaattga 1150
>gb|AC087312.8| Homo sapiens 12p BAC RP11-615I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 148543 Score = 42.1 bits (21), Expect = 7.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 490 cccacctctccgccaccgccagccc 514 ||||||||||||||||| ||||||| Sbjct: 101745 cccacctctccgccacccccagccc 101721
>gb|AC090451.6| Homo sapiens chromosome 8, clone RP11-318N11, complete sequence Length = 160671 Score = 42.1 bits (21), Expect = 7.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1721 gattgagaagtacaaaagttttggt 1745 ||||||||||||||| ||||||||| Sbjct: 14516 gattgagaagtacaagagttttggt 14540
>emb|BX842568.3| Human DNA sequence from clone RP11-31H15 on chromosome X Contains the gene for a novel protein, a transmembrane 4 superfamily member 10 (TM4SF10) pseudogene, a transcription factor Dp-1 (TFDP1) pseudogene, a novel pseudogene and two ferritin, heavy polypeptide-like 17 (FTHL17) pseudogenes, complete sequence Length = 161540 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 897 gggatagagaagtttgaaacc 917 ||||||||||||||||||||| Sbjct: 98360 gggatagagaagtttgaaacc 98380
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1648 gttatttcatcgatgctttgc 1668 ||||||||||||||||||||| Sbjct: 1471161 gttatttcatcgatgctttgc 1471181
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1648 gttatttcatcgatgctttgc 1668 ||||||||||||||||||||| Sbjct: 1442606 gttatttcatcgatgctttgc 1442626
>gb|BC094190.1| Xenopus laevis hypothetical protein MGC115123, mRNA (cDNA clone MGC:115123 IMAGE:6948152), complete cds Length = 1838 Score = 42.1 bits (21), Expect = 7.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 1480 tgggtgctgttttcatgcctcatggtcttgggcacttgcttggaattga 1528 ||||||| ||||||||||| || |||||||| || || || |||||||| Sbjct: 1087 tgggtgcagttttcatgccacacggtcttggacattttctaggaattga 1135
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 531 ctcctccagggtggcgaggag 551 ||||||||||||||||||||| Sbjct: 1845107 ctcctccagggtggcgaggag 1845127
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 cccacctctccgccaccgcca 510 ||||||||||||||||||||| Sbjct: 5351 cccacctctccgccaccgcca 5331
>dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1121A12 Length = 138796 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 cccacctctccgccaccgcca 510 ||||||||||||||||||||| Sbjct: 125408 cccacctctccgccaccgcca 125388
>gb|AC087856.6| Homo sapiens chromosome 8, clone RP11-4K16, complete sequence Length = 169060 Score = 42.1 bits (21), Expect = 7.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1721 gattgagaagtacaaaagttttggt 1745 ||||||||||||||| ||||||||| Sbjct: 93134 gattgagaagtacaagagttttggt 93110
>emb|CR407141.1| Gallus gallus finished cDNA, clone ChEST741p4 Length = 1242 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 436 tgcccatggagctgcacacag 456 ||||||||||||||||||||| Sbjct: 697 tgcccatggagctgcacacag 717
>emb|BX465205.16| Zebrafish DNA sequence from clone CH211-197E7 in linkage group 23, complete sequence Length = 189019 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1199 gacactgaatgatggagacat 1219 ||||||||||||||||||||| Sbjct: 33356 gacactgaatgatggagacat 33336
>dbj|AK070290.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048E15, full insert sequence Length = 2394 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 490 cccacctctccgccaccgcca 510 ||||||||||||||||||||| Sbjct: 143 cccacctctccgccaccgcca 163
>dbj|AK066643.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071K14, full insert sequence Length = 2168 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 754 acaaggtcgatttggtcttct 774 ||||||||||||||||||||| Sbjct: 1650 acaaggtcgatttggtcttct 1670
>gb|AC009514.2|AC009514 Homo sapiens chromosome 8 clone RP11-4K16, complete sequence Length = 169059 Score = 42.1 bits (21), Expect = 7.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1721 gattgagaagtacaaaagttttggt 1745 ||||||||||||||| ||||||||| Sbjct: 93134 gattgagaagtacaagagttttggt 93110
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 531 ctcctccagggtggcgaggag 551 ||||||||||||||||||||| Sbjct: 1519952 ctcctccagggtggcgaggag 1519972
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1648 gttatttcatcgatgctttgc 1668 ||||||||||||||||||||| Sbjct: 1404244 gttatttcatcgatgctttgc 1404264
>gb|AF013805.1| Pinus taeda putative cell wall protein (lp5) gene, complete cds Length = 3706 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1244 atataatttctatggctctga 1264 ||||||||||||||||||||| Sbjct: 3455 atataatttctatggctctga 3435
>emb|AL732634.13| Mouse DNA sequence from clone RP23-322G19 on chromosome 4, complete sequence Length = 203176 Score = 42.1 bits (21), Expect = 7.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1417 ttgaatctctcaagaaagaaa 1437 ||||||||||||||||||||| Sbjct: 165273 ttgaatctctcaagaaagaaa 165293 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 377,232,445 Number of extensions: 19844997 Number of successful extensions: 101700 Number of sequences better than 10.0: 59 Number of HSP's gapped: 101694 Number of HSP's successfully gapped: 93 Length of query: 2018 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1995 Effective length of database: 18,503,978,556 Effective search space: 36915437219220 Effective search space used: 36915437219220 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)