ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf43d17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q03001:BPA1_HUMAN Bullous pemphigoid antigen 1, isoforms 1/2/3/4... 30 5.9
2Q8G6T7:HTPX_BIFLO Probable protease htpX homolog - Bifidobacteri... 30 9.9

>Q03001:BPA1_HUMAN Bullous pemphigoid antigen 1, isoforms 1/2/3/4/5/8 - Homo sapiens|
            (Human)
          Length = 3214
 Score = 30.4 bits (67), Expect = 5.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 372  PFCLEPATSSSSCRGMSGLQRQHNSQ 295
            P C  P T ++SCR ++GLQ++H+ Q
Sbjct: 1901 PVC--PITQATSCRAVTGLQQEHDKQ 1924



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>Q8G6T7:HTPX_BIFLO Probable protease htpX homolog - Bifidobacterium longum|
          Length = 306

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 260 VGHGILHTYSEALVARIHDVLINNVARRRSTGSGYLGHS---DGAHQRDQR 117
           +GH ++H Y+       HD+L + +A   +T   YLG+S    G   RD R
Sbjct: 133 LGHELMHVYN-------HDILTSAIASAMATVISYLGYSLMYFGGGSRDDR 176


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 107,739,801
Number of extensions: 2255753
Number of successful extensions: 5219
Number of sequences better than 10.0: 2
Number of HSP's gapped: 5218
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 107
Effective length of database: 70,788,284
Effective search space: 7574346388
Effective search space used: 7574346388
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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