ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf43b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P08045:XFIN_XENLA Zinc finger protein Xfin - Xenopus laevis (Afr... 35 0.86
2Q5YCW1:TAU_PANTR Microtubule-associated protein tau - Pan troglo... 33 3.3
3Q5YCV9:TAU_HYLLA Microtubule-associated protein tau - Hylobates ... 33 3.3
4Q5YCW0:TAU_GORGO Microtubule-associated protein tau - Gorilla go... 33 3.3
5Q28139:NCKX1_BOVIN Sodium/potassium/calcium exchanger 1 - Bos ta... 32 4.3
6P51825:AFF1_HUMAN AF4/FMR2 family member 1 - Homo sapiens (Human) 32 4.3
7Q10475:IF4G_SCHPO Eukaryotic translation initiation factor 4 gam... 31 9.5
8O19025:ADA2B_MACPR Alpha-2B adrenergic receptor - Macroscelides ... 31 9.5

>P08045:XFIN_XENLA Zinc finger protein Xfin - Xenopus laevis (African clawed frog)|
          Length = 1350
 Score = 34.7 bits (78), Expect = 0.86
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = +1

Query: 556 NKWFKSFFEVIDTLSVDQIHEHTRQWHCPACKNGPGAIDWFKGLQSLVTHARTKGSKR 729
           N+  KSFF+  D +   + H   R +HCP C  G      F     LV H RT   +R
Sbjct: 781 NECDKSFFQTSDLVKHLRTHTGERPYHCPECNKG------FIQNSDLVKHQRTHTGER 832



to top

>Q5YCW1:TAU_PANTR Microtubule-associated protein tau - Pan troglodytes (Chimpanzee)|
          Length = 776

 Score = 32.7 bits (73), Expect = 3.3
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +1

Query: 265 PAARGNPRASSQTKSTEPDLQAPNPVVTPPLANGWQWASRPRPSGPESSKDDVASSGLDS 444
           P     P    Q  +T    + P    TPP +   Q   RP P+GP S + +   SG  S
Sbjct: 471 PRGAAPPGQKGQANATRIPAKTPPAPKTPPSSATKQVQRRPPPAGPRSERGEPPKSGDRS 530

Query: 445 EANNP 459
             ++P
Sbjct: 531 GYSSP 535



to top

>Q5YCV9:TAU_HYLLA Microtubule-associated protein tau - Hylobates lar (Common gibbon)|
          Length = 776

 Score = 32.7 bits (73), Expect = 3.3
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +1

Query: 265 PAARGNPRASSQTKSTEPDLQAPNPVVTPPLANGWQWASRPRPSGPESSKDDVASSGLDS 444
           P     P    Q  +T    + P    TPP +   Q   RP P+GP+S + +   SG  S
Sbjct: 471 PRGAAPPGQKGQANATRIPAKTPPAPKTPPSSVTKQVQRRPPPAGPKSERGEPPKSGDRS 530

Query: 445 EANNP 459
             ++P
Sbjct: 531 GYSSP 535



to top

>Q5YCW0:TAU_GORGO Microtubule-associated protein tau - Gorilla gorilla gorilla|
           (Lowland gorilla)
          Length = 776

 Score = 32.7 bits (73), Expect = 3.3
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +1

Query: 265 PAARGNPRASSQTKSTEPDLQAPNPVVTPPLANGWQWASRPRPSGPESSKDDVASSGLDS 444
           P     P    Q  +T    + P    TPP +   Q   RP P+GP S + +   SG  S
Sbjct: 471 PRGAAPPGQKGQANATRIPAKTPPAPKTPPSSATKQVQRRPPPAGPRSERGEPPKSGDRS 530

Query: 445 EANNP 459
             ++P
Sbjct: 531 GYSSP 535



to top

>Q28139:NCKX1_BOVIN Sodium/potassium/calcium exchanger 1 - Bos taurus (Bovine)|
          Length = 1216

 Score = 32.3 bits (72), Expect = 4.3
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +1

Query: 265 PAARGNPRASSQTKSTEPDLQAPNPVVTPPLANGWQWASRPRPSGPESSKDDVASSGLDS 444
           P A+  P+A +++K  E   + P   VTP           P P      ++D  S G+ +
Sbjct: 692 PEAKATPQAKAESKPEEEPAKLPEVTVTP----------APAPDVKGDQEEDPGSQGVGA 741

Query: 445 EANN 456
           EA N
Sbjct: 742 EAEN 745



to top

>P51825:AFF1_HUMAN AF4/FMR2 family member 1 - Homo sapiens (Human)|
          Length = 1210

 Score = 32.3 bits (72), Expect = 4.3
 Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
 Frame = +1

Query: 166 SSNAPPTTARQAWXXXXXXXXXXXXWAQPSDRRPAARGNPRASSQTKSTEPDLQAPNPVV 345
           SS+APP+  +                   SD   ++     +SS        L+ P P  
Sbjct: 446 SSSAPPSAPQSLPEPVASAHSSSAESESTSDSDSSSDSESESSSSDSEENEPLETPAPEP 505

Query: 346 TPPLANGWQ---W---ASRPR--PSGPESSK-----------DDVASSGLDSEANNP 459
            PP  N WQ   W    S+P   P GP S++            D A+S   SE+ +P
Sbjct: 506 EPPTTNKWQLDNWLTKVSQPAAPPEGPRSTEPPRRHPESKGSSDSATSQEHSESKDP 562



to top

>Q10475:IF4G_SCHPO Eukaryotic translation initiation factor 4 gamma -|
           Schizosaccharomyces pombe (Fission yeast)
          Length = 1403

 Score = 31.2 bits (69), Expect = 9.5
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +1

Query: 268 AARGNPRASSQTKSTEPDLQAPNPVVTPPLANGWQWASRPRPSGPESSKDDVASSGLDSE 447
           ++  N   S QT +TEP++     V     + G   +S   PS   SSK D+  SGL+S 
Sbjct: 723 SSEANVDTSKQTNATEPEVVDKTKVEKLKASEGKSTSSLSSPSHSTSSKRDLL-SGLESL 781

Query: 448 A--NNPEAE 468
           +   NP++E
Sbjct: 782 SLKTNPKSE 790



to top

>O19025:ADA2B_MACPR Alpha-2B adrenergic receptor - Macroscelides proboscideus|
           (Short-eared elephant shrew)
          Length = 387

 Score = 31.2 bits (69), Expect = 9.5
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 253 SDRRPAARGNPRASS----QTKSTEPDLQAPNPVVTPPLANGWQWASRPRPSGPESSKDD 420
           S R+P A+G PR       Q +     + A  P +T PLA   +     +P+G   + +D
Sbjct: 191 SRRKPRAKGXPREGESKQPQLRPVGTSVSARPPALTSPLAVTGEANGHSKPTGERETPED 250

Query: 421 VAS 429
           + S
Sbjct: 251 LVS 253


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 215,926,497
Number of extensions: 4678445
Number of successful extensions: 11721
Number of sequences better than 10.0: 8
Number of HSP's gapped: 11697
Number of HSP's successfully gapped: 8
Length of query: 421
Length of database: 100,686,439
Length adjustment: 116
Effective length of query: 305
Effective length of database: 68,868,219
Effective search space: 21004806795
Effective search space used: 21004806795
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top