| Clone Name | FLbaf43b06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 220 bits (111), Expect = 9e-54 Identities = 252/299 (84%) Strand = Plus / Minus Query: 622 actaggcaatggcattgtccggcatgcaaaaatggaccaggagcaattgactggttcaaa 681 ||||||||||||||||| || ||||||||||||||||| || ||||||||||||| |||| Sbjct: 5037940 actaggcaatggcattgcccagcatgcaaaaatggacctggtgcaattgactggtacaaa 5037881 Query: 682 gggctgcaatctttggtgacacatgctagaacaaagggttctaagagggttaagctccac 741 ||||| ||| ||||| |||| ||||| | |||||||||||||| | ||| |||| ||| Sbjct: 5037880 gggctacaacctttgatgactcatgccaaaacaaagggttctataaaggtcaagcgtcac 5037821 Query: 742 agggaattggctgcattgctcgaagaggagatgtctcgcaggggatcttctgtcgtacca 801 || ||||||||| || | ||||| ||| | |||||||||||| |||| || |||||| Sbjct: 5037820 agagaattggctagtttattggaagaagagctatctcgcaggggaacttcagtggtacca 5037761 Query: 802 tctggtgagcaatttgggaaatggaaaggattgcgagaaagcactgaccgggagattgta 861 ||||| || |||||| ||||||||||||||||||| ||||||||||| || |||||||| Sbjct: 5037760 tctggcgaacaatttaggaaatggaaaggattgcgggaaagcactgatcgtgagattgtt 5037701 Query: 862 tggccaccaatggtcatcgtgatgaacaccctacttgaaaaagatgaagatgataaggt 920 |||||||||||||| | || |||||||| || | ||| ||||||| ||||||||||| Sbjct: 5037700 tggccaccaatggtggttgttatgaacactgtattggaacaagatgaggatgataaggt 5037642 Score = 147 bits (74), Expect = 1e-31 Identities = 209/254 (82%) Strand = Plus / Minus Query: 595 ttaagtgttgatcagatacatgagcacactaggcaatggcattgtccggcatgcaaaaat 654 ||||||||||| |||||| |||| | |||||||||||||||||||| |||||||||||| Sbjct: 5047818 ttaagtgttgaacagataaatgaaaagactaggcaatggcattgtccagcatgcaaaaat 5047759 Query: 655 ggaccaggagcaattgactggttcaaagggctgcaatctttggtgacacatgctagaaca 714 | || || | | || ||||| ||||||| | || ||||| ||| |||||||||||| Sbjct: 5047758 gtacgtggtggagttacctggtacaaagggttacagcctttgatgaatcatgctagaaca 5047699 Query: 715 aagggttctaagagggttaagctccacagggaattggctgcattgctcgaagaggagatg 774 ||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||| || Sbjct: 5047698 aagggttctaagagggttaagcttcacagagaattggctgcattactggaagaggagctg 5047639 Query: 775 tctcgcaggggatcttctgtcgtaccatctggtgagcaatttgggaaatggaaaggattg 834 | ||| | |||| ||| | | | ||||||| ||| ||||| | |||||||||||| Sbjct: 5047638 tatcgtacgggaatttcaatggcatcatctggcgagttctttggaatctggaaaggattg 5047579 Query: 835 cgagaaagcactga 848 ||||||| |||||| Sbjct: 5047578 cgagaaaacactga 5047565 Score = 77.8 bits (39), Expect = 9e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 339 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 398 |||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| |||| Sbjct: 5038235 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 5038176 Query: 399 tcctgaaagca 409 | ||||||||| Sbjct: 5038175 tactgaaagca 5038165 Score = 71.9 bits (36), Expect = 5e-09 Identities = 132/164 (80%) Strand = Plus / Minus Query: 246 tcaaccttctgatcgtaggcctgctgctagaggcaatcccagggcatcatcacaaacaaa 305 ||||| |||||||| |||||||||||| ||||||| ||| ||| || |||||| || Sbjct: 5048401 tcaacattctgatcataggcctgctgccagaggcagtcctaggtcactgccacaaaataa 5048342 Query: 306 gtctacagaaccagacttgcaagcaccaaacccagttgtgactccacccctggcaaatgg 365 | ||||||| || | ||||||||||| |||||||||||| |||| || |||||||| Sbjct: 5048341 gcatacagaaacaaaattgcaagcaccgtgtccagttgtgactgcacctcttgcaaatgg 5048282 Query: 366 ttggcagtgggcatccaggcctcgcccatctggtcctgaaagca 409 || |||||||| | ||| | ||||| |||||||| |||| |||| Sbjct: 5048281 tttgcagtgggtacccaagtctcgctcatctggttctgagagca 5048238 Score = 46.1 bits (23), Expect = 0.31 Identities = 71/87 (81%) Strand = Plus / Minus Query: 335 acccagttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccat 394 |||||||||||||| || | || |||||||| | |||||||| ||||| ||||| ||| Sbjct: 5048180 acccagttgtgactgcaactcttgcaaatggcttgcagtgggtgcccaggtctcgctcat 5048121 Query: 395 ctggtcctgaaagcagcaaggatgatg 421 ||| || |||||| ||||||||||| Sbjct: 5048120 ctgactctcaaagcaacaaggatgatg 5048094 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Minus Query: 524 catctgagaaaagttttgagactcgcaaaa 553 |||||||||||| |||||||||||| |||| Sbjct: 5047889 catctgagaaaaattttgagactcgaaaaa 5047860
>emb|AL831811.5|CNS08CAO Oryza sativa chromosome 12, . BAC OJ1561_A05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 91053 Score = 220 bits (111), Expect = 9e-54 Identities = 252/299 (84%) Strand = Plus / Minus Query: 622 actaggcaatggcattgtccggcatgcaaaaatggaccaggagcaattgactggttcaaa 681 ||||||||||||||||| || ||||||||||||||||| || ||||||||||||| |||| Sbjct: 81314 actaggcaatggcattgcccagcatgcaaaaatggacctggtgcaattgactggtacaaa 81255 Query: 682 gggctgcaatctttggtgacacatgctagaacaaagggttctaagagggttaagctccac 741 ||||| ||| ||||| |||| ||||| | |||||||||||||| | ||| |||| ||| Sbjct: 81254 gggctacaacctttgatgactcatgccaaaacaaagggttctataaaggtcaagcgtcac 81195 Query: 742 agggaattggctgcattgctcgaagaggagatgtctcgcaggggatcttctgtcgtacca 801 || ||||||||| || | ||||| ||| | |||||||||||| |||| || |||||| Sbjct: 81194 agagaattggctagtttattggaagaagagctatctcgcaggggaacttcagtggtacca 81135 Query: 802 tctggtgagcaatttgggaaatggaaaggattgcgagaaagcactgaccgggagattgta 861 ||||| || |||||| ||||||||||||||||||| ||||||||||| || |||||||| Sbjct: 81134 tctggcgaacaatttaggaaatggaaaggattgcgggaaagcactgatcgtgagattgtt 81075 Query: 862 tggccaccaatggtcatcgtgatgaacaccctacttgaaaaagatgaagatgataaggt 920 |||||||||||||| | || |||||||| || | ||| ||||||| ||||||||||| Sbjct: 81074 tggccaccaatggtggttgttatgaacactgtattggaacaagatgaggatgataaggt 81016 Score = 77.8 bits (39), Expect = 9e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 339 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 398 |||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| |||| Sbjct: 81609 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 81550 Query: 399 tcctgaaagca 409 | ||||||||| Sbjct: 81549 tactgaaagca 81539 Score = 48.1 bits (24), Expect = 0.078 Identities = 93/116 (80%) Strand = Plus / Minus Query: 733 aagctccacagggaattggctgcattgctcgaagaggagatgtctcgcaggggatcttct 792 ||||| ||||| |||||||||||||| || ||||||||| ||| ||| | |||| ||| Sbjct: 91053 aagcttcacagagaattggctgcattactggaagaggagctgtatcgtacgggaatttca 90994 Query: 793 gtcgtaccatctggtgagcaatttgggaaatggaaaggattgcgagaaagcactga 848 | | | ||||||| ||| ||||| | ||||||||||||||||||| |||||| Sbjct: 90993 atggcatcatctggcgagttctttggaatctggaaaggattgcgagaaaacactga 90938
>emb|AL713901.3|CNS07YQ1 Oryza sativa chromosome 12, . BAC OJ1102_B11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 112231 Score = 220 bits (111), Expect = 9e-54 Identities = 252/299 (84%) Strand = Plus / Minus Query: 622 actaggcaatggcattgtccggcatgcaaaaatggaccaggagcaattgactggttcaaa 681 ||||||||||||||||| || ||||||||||||||||| || ||||||||||||| |||| Sbjct: 8593 actaggcaatggcattgcccagcatgcaaaaatggacctggtgcaattgactggtacaaa 8534 Query: 682 gggctgcaatctttggtgacacatgctagaacaaagggttctaagagggttaagctccac 741 ||||| ||| ||||| |||| ||||| | |||||||||||||| | ||| |||| ||| Sbjct: 8533 gggctacaacctttgatgactcatgccaaaacaaagggttctataaaggtcaagcgtcac 8474 Query: 742 agggaattggctgcattgctcgaagaggagatgtctcgcaggggatcttctgtcgtacca 801 || ||||||||| || | ||||| ||| | |||||||||||| |||| || |||||| Sbjct: 8473 agagaattggctagtttattggaagaagagctatctcgcaggggaacttcagtggtacca 8414 Query: 802 tctggtgagcaatttgggaaatggaaaggattgcgagaaagcactgaccgggagattgta 861 ||||| || |||||| ||||||||||||||||||| ||||||||||| || |||||||| Sbjct: 8413 tctggcgaacaatttaggaaatggaaaggattgcgggaaagcactgatcgtgagattgtt 8354 Query: 862 tggccaccaatggtcatcgtgatgaacaccctacttgaaaaagatgaagatgataaggt 920 |||||||||||||| | || |||||||| || | ||| ||||||| ||||||||||| Sbjct: 8353 tggccaccaatggtggttgttatgaacactgtattggaacaagatgaggatgataaggt 8295 Score = 147 bits (74), Expect = 1e-31 Identities = 209/254 (82%) Strand = Plus / Minus Query: 595 ttaagtgttgatcagatacatgagcacactaggcaatggcattgtccggcatgcaaaaat 654 ||||||||||| |||||| |||| | |||||||||||||||||||| |||||||||||| Sbjct: 18471 ttaagtgttgaacagataaatgaaaagactaggcaatggcattgtccagcatgcaaaaat 18412 Query: 655 ggaccaggagcaattgactggttcaaagggctgcaatctttggtgacacatgctagaaca 714 | || || | | || ||||| ||||||| | || ||||| ||| |||||||||||| Sbjct: 18411 gtacgtggtggagttacctggtacaaagggttacagcctttgatgaatcatgctagaaca 18352 Query: 715 aagggttctaagagggttaagctccacagggaattggctgcattgctcgaagaggagatg 774 ||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||| || Sbjct: 18351 aagggttctaagagggttaagcttcacagagaattggctgcattactggaagaggagctg 18292 Query: 775 tctcgcaggggatcttctgtcgtaccatctggtgagcaatttgggaaatggaaaggattg 834 | ||| | |||| ||| | | | ||||||| ||| ||||| | |||||||||||| Sbjct: 18291 tatcgtacgggaatttcaatggcatcatctggcgagttctttggaatctggaaaggattg 18232 Query: 835 cgagaaagcactga 848 ||||||| |||||| Sbjct: 18231 cgagaaaacactga 18218 Score = 77.8 bits (39), Expect = 9e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 339 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 398 |||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| |||| Sbjct: 8888 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 8829 Query: 399 tcctgaaagca 409 | ||||||||| Sbjct: 8828 tactgaaagca 8818 Score = 71.9 bits (36), Expect = 5e-09 Identities = 132/164 (80%) Strand = Plus / Minus Query: 246 tcaaccttctgatcgtaggcctgctgctagaggcaatcccagggcatcatcacaaacaaa 305 ||||| |||||||| |||||||||||| ||||||| ||| ||| || |||||| || Sbjct: 19054 tcaacattctgatcataggcctgctgccagaggcagtcctaggtcactgccacaaaataa 18995 Query: 306 gtctacagaaccagacttgcaagcaccaaacccagttgtgactccacccctggcaaatgg 365 | ||||||| || | ||||||||||| |||||||||||| |||| || |||||||| Sbjct: 18994 gcatacagaaacaaaattgcaagcaccgtgtccagttgtgactgcacctcttgcaaatgg 18935 Query: 366 ttggcagtgggcatccaggcctcgcccatctggtcctgaaagca 409 || |||||||| | ||| | ||||| |||||||| |||| |||| Sbjct: 18934 tttgcagtgggtacccaagtctcgctcatctggttctgagagca 18891 Score = 46.1 bits (23), Expect = 0.31 Identities = 71/87 (81%) Strand = Plus / Minus Query: 335 acccagttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccat 394 |||||||||||||| || | || |||||||| | |||||||| ||||| ||||| ||| Sbjct: 18833 acccagttgtgactgcaactcttgcaaatggcttgcagtgggtgcccaggtctcgctcat 18774 Query: 395 ctggtcctgaaagcagcaaggatgatg 421 ||| || |||||| ||||||||||| Sbjct: 18773 ctgactctcaaagcaacaaggatgatg 18747 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Minus Query: 524 catctgagaaaagttttgagactcgcaaaa 553 |||||||||||| |||||||||||| |||| Sbjct: 18542 catctgagaaaaattttgagactcgaaaaa 18513
>ref|NM_001072892.1| Oryza sativa (japonica cultivar-group) Os12g0197500 (Os12g0197500) mRNA, complete cds Length = 2177 Score = 216 bits (109), Expect = 1e-52 Identities = 250/297 (84%) Strand = Plus / Plus Query: 622 actaggcaatggcattgtccggcatgcaaaaatggaccaggagcaattgactggttcaaa 681 ||||||||||||||||| || ||||||||||||||||| || ||||||||||||| |||| Sbjct: 678 actaggcaatggcattgcccagcatgcaaaaatggacctggtgcaattgactggtacaaa 737 Query: 682 gggctgcaatctttggtgacacatgctagaacaaagggttctaagagggttaagctccac 741 ||||| ||| ||||| |||| ||||| | |||||||||||||| | ||| |||| ||| Sbjct: 738 gggctacaacctttgatgactcatgccaaaacaaagggttctataaaggtcaagcgtcac 797 Query: 742 agggaattggctgcattgctcgaagaggagatgtctcgcaggggatcttctgtcgtacca 801 || ||||||||| || | ||||| ||| | |||||||||||| |||| || |||||| Sbjct: 798 agagaattggctagtttattggaagaagagctatctcgcaggggaacttcagtggtacca 857 Query: 802 tctggtgagcaatttgggaaatggaaaggattgcgagaaagcactgaccgggagattgta 861 ||||| || |||||| ||||||||||||||||||| ||||||||||| || |||||||| Sbjct: 858 tctggcgaacaatttaggaaatggaaaggattgcgggaaagcactgatcgtgagattgtt 917 Query: 862 tggccaccaatggtcatcgtgatgaacaccctacttgaaaaagatgaagatgataag 918 |||||||||||||| | || |||||||| || | ||| ||||||| ||||||||| Sbjct: 918 tggccaccaatggtggttgttatgaacactgtattggaacaagatgaggatgataag 974 Score = 77.8 bits (39), Expect = 9e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 339 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 398 |||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| |||| Sbjct: 383 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 442 Query: 399 tcctgaaagca 409 | ||||||||| Sbjct: 443 tactgaaagca 453 Score = 56.0 bits (28), Expect = 3e-04 Identities = 66/78 (84%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 38 ccggcgatcgacgcggcggcggg---cctcccggcaacggcgacaaccccgggggtggct 94 |||||||||| |||||||||||| ||||||||| ||||||| || |||||||||| | Sbjct: 85 ccggcgatcgccgcggcggcggggggcctcccggctccggcgacgactccgggggtggtt 144 Query: 95 gggaaactattgaaaaga 112 |||| ||| |||| |||| Sbjct: 145 gggagactgttgagaaga 162
>dbj|AK064995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D20, full insert sequence Length = 2181 Score = 216 bits (109), Expect = 1e-52 Identities = 250/297 (84%) Strand = Plus / Plus Query: 622 actaggcaatggcattgtccggcatgcaaaaatggaccaggagcaattgactggttcaaa 681 ||||||||||||||||| || ||||||||||||||||| || ||||||||||||| |||| Sbjct: 680 actaggcaatggcattgcccagcatgcaaaaatggacctggtgcaattgactggtacaaa 739 Query: 682 gggctgcaatctttggtgacacatgctagaacaaagggttctaagagggttaagctccac 741 ||||| ||| ||||| |||| ||||| | |||||||||||||| | ||| |||| ||| Sbjct: 740 gggctacaacctttgatgactcatgccaaaacaaagggttctataaaggtcaagcgtcac 799 Query: 742 agggaattggctgcattgctcgaagaggagatgtctcgcaggggatcttctgtcgtacca 801 || ||||||||| || | ||||| ||| | |||||||||||| |||| || |||||| Sbjct: 800 agagaattggctagtttattggaagaagagctatctcgcaggggaacttcagtggtacca 859 Query: 802 tctggtgagcaatttgggaaatggaaaggattgcgagaaagcactgaccgggagattgta 861 ||||| || |||||| ||||||||||||||||||| ||||||||||| || |||||||| Sbjct: 860 tctggcgaacaatttaggaaatggaaaggattgcgggaaagcactgatcgtgagattgtt 919 Query: 862 tggccaccaatggtcatcgtgatgaacaccctacttgaaaaagatgaagatgataag 918 |||||||||||||| | || |||||||| || | ||| ||||||| ||||||||| Sbjct: 920 tggccaccaatggtggttgttatgaacactgtattggaacaagatgaggatgataag 976 Score = 77.8 bits (39), Expect = 9e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 339 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 398 |||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| |||| Sbjct: 385 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 444 Query: 399 tcctgaaagca 409 | ||||||||| Sbjct: 445 tactgaaagca 455 Score = 56.0 bits (28), Expect = 3e-04 Identities = 66/78 (84%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 38 ccggcgatcgacgcggcggcggg---cctcccggcaacggcgacaaccccgggggtggct 94 |||||||||| |||||||||||| ||||||||| ||||||| || |||||||||| | Sbjct: 87 ccggcgatcgccgcggcggcggggggcctcccggctccggcgacgactccgggggtggtt 146 Query: 95 gggaaactattgaaaaga 112 |||| ||| |||| |||| Sbjct: 147 gggagactgttgagaaga 164
>dbj|AK064217.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-F07, full insert sequence Length = 1556 Score = 208 bits (105), Expect = 4e-50 Identities = 249/297 (83%) Strand = Plus / Plus Query: 622 actaggcaatggcattgtccggcatgcaaaaatggaccaggagcaattgactggttcaaa 681 ||||||||||||||||| || ||||||||||||||||| || ||||||||||||| |||| Sbjct: 680 actaggcaatggcattgcccagcatgcaaaaatggacctggtgcaattgactggtacaaa 739 Query: 682 gggctgcaatctttggtgacacatgctagaacaaagggttctaagagggttaagctccac 741 ||||| ||| ||||| |||| ||||| | |||||||||||||| | ||| |||| ||| Sbjct: 740 gggctacaacctttgatgactcatgccaaaacaaagggttctataaaggtcaagcgtcac 799 Query: 742 agggaattggctgcattgctcgaagaggagatgtctcgcaggggatcttctgtcgtacca 801 || ||||||||| || | ||||| ||| | |||||||||||| |||| || |||||| Sbjct: 800 agagaattggctagtttattggaagaagagctatctcgcaggggaacttcagtggtacca 859 Query: 802 tctggtgagcaatttgggaaatggaaaggattgcgagaaagcactgaccgggagattgta 861 ||||| | |||||| ||||||||||||||||||| ||||||||||| || |||||||| Sbjct: 860 tctggcggacaatttaggaaatggaaaggattgcgggaaagcactgatcgtgagattgtt 919 Query: 862 tggccaccaatggtcatcgtgatgaacaccctacttgaaaaagatgaagatgataag 918 |||||||||||||| | || |||||||| || | ||| ||||||| ||||||||| Sbjct: 920 tggccaccaatggtggttgttatgaacactgtattggaacaagatgaggatgataag 976 Score = 77.8 bits (39), Expect = 9e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 339 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 398 |||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| |||| Sbjct: 385 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 444 Query: 399 tcctgaaagca 409 | ||||||||| Sbjct: 445 tactgaaagca 455 Score = 56.0 bits (28), Expect = 3e-04 Identities = 66/78 (84%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 38 ccggcgatcgacgcggcggcggg---cctcccggcaacggcgacaaccccgggggtggct 94 |||||||||| |||||||||||| ||||||||| ||||||| || |||||||||| | Sbjct: 87 ccggcgatcgccgcggcggcggggggcctcccggctccggcgacgactccgggggtggtt 146 Query: 95 gggaaactattgaaaaga 112 |||| ||| |||| |||| Sbjct: 147 gggagactgttgagaaga 164
>ref|NM_001072893.1| Oryza sativa (japonica cultivar-group) Os12g0197700 (Os12g0197700) mRNA, complete cds Length = 2571 Score = 147 bits (74), Expect = 1e-31 Identities = 209/254 (82%) Strand = Plus / Plus Query: 595 ttaagtgttgatcagatacatgagcacactaggcaatggcattgtccggcatgcaaaaat 654 ||||||||||| |||||| |||| | |||||||||||||||||||| |||||||||||| Sbjct: 876 ttaagtgttgaacagataaatgaaaagactaggcaatggcattgtccagcatgcaaaaat 935 Query: 655 ggaccaggagcaattgactggttcaaagggctgcaatctttggtgacacatgctagaaca 714 | || || | | || ||||| ||||||| | || ||||| ||| |||||||||||| Sbjct: 936 gtacgtggtggagttacctggtacaaagggttacagcctttgatgaatcatgctagaaca 995 Query: 715 aagggttctaagagggttaagctccacagggaattggctgcattgctcgaagaggagatg 774 ||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||| || Sbjct: 996 aagggttctaagagggttaagcttcacagagaattggctgcattactggaagaggagctg 1055 Query: 775 tctcgcaggggatcttctgtcgtaccatctggtgagcaatttgggaaatggaaaggattg 834 | ||| | |||| ||| | | | ||||||| ||| ||||| | |||||||||||| Sbjct: 1056 tatcgtacgggaatttcaatggcatcatctggcgagttctttggaatctggaaaggattg 1115 Query: 835 cgagaaagcactga 848 ||||||| |||||| Sbjct: 1116 cgagaaaacactga 1129 Score = 71.9 bits (36), Expect = 5e-09 Identities = 132/164 (80%) Strand = Plus / Plus Query: 246 tcaaccttctgatcgtaggcctgctgctagaggcaatcccagggcatcatcacaaacaaa 305 ||||| |||||||| |||||||||||| ||||||| ||| ||| || |||||| || Sbjct: 293 tcaacattctgatcataggcctgctgccagaggcagtcctaggtcactgccacaaaataa 352 Query: 306 gtctacagaaccagacttgcaagcaccaaacccagttgtgactccacccctggcaaatgg 365 | ||||||| || | ||||||||||| |||||||||||| |||| || |||||||| Sbjct: 353 gcatacagaaacaaaattgcaagcaccgtgtccagttgtgactgcacctcttgcaaatgg 412 Query: 366 ttggcagtgggcatccaggcctcgcccatctggtcctgaaagca 409 || |||||||| | ||| | ||||| |||||||| |||| |||| Sbjct: 413 tttgcagtgggtacccaagtctcgctcatctggttctgagagca 456 Score = 46.1 bits (23), Expect = 0.31 Identities = 71/87 (81%) Strand = Plus / Plus Query: 335 acccagttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccat 394 |||||||||||||| || | || |||||||| | |||||||| ||||| ||||| ||| Sbjct: 514 acccagttgtgactgcaactcttgcaaatggcttgcagtgggtgcccaggtctcgctcat 573 Query: 395 ctggtcctgaaagcagcaaggatgatg 421 ||| || |||||| ||||||||||| Sbjct: 574 ctgactctcaaagcaacaaggatgatg 600 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 524 catctgagaaaagttttgagactcgcaaaa 553 |||||||||||| |||||||||||| |||| Sbjct: 805 catctgagaaaaattttgagactcgaaaaa 834
>dbj|AK100699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114M02, full insert sequence Length = 2570 Score = 131 bits (66), Expect = 7e-27 Identities = 208/254 (81%), Gaps = 1/254 (0%) Strand = Plus / Plus Query: 595 ttaagtgttgatcagatacatgagcacactaggcaatggcattgtccggcatgcaaaaat 654 ||||||||||| |||||| |||| | |||||||||||||||||||| |||||||||| | Sbjct: 876 ttaagtgttgaacagataaatgaaaagactaggcaatggcattgtccagcatgcaaaa-t 934 Query: 655 ggaccaggagcaattgactggttcaaagggctgcaatctttggtgacacatgctagaaca 714 | || || | | || ||||| ||||||| | || ||||| ||| |||||||||||| Sbjct: 935 gtacgtggtggagttacctggtacaaagggttacagcctttgatgaatcatgctagaaca 994 Query: 715 aagggttctaagagggttaagctccacagggaattggctgcattgctcgaagaggagatg 774 ||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||| || Sbjct: 995 aagggttctaagagggttaagcttcacagagaattggctgcattactggaagaggagctg 1054 Query: 775 tctcgcaggggatcttctgtcgtaccatctggtgagcaatttgggaaatggaaaggattg 834 | ||| | |||| ||| | | | ||||||| ||| ||||| | |||||||||||| Sbjct: 1055 tatcgtacgggaatttcaatggcatcatctggcgagttctttggaatctggaaaggattg 1114 Query: 835 cgagaaagcactga 848 ||||||| |||||| Sbjct: 1115 cgagaaaacactga 1128 Score = 71.9 bits (36), Expect = 5e-09 Identities = 132/164 (80%) Strand = Plus / Plus Query: 246 tcaaccttctgatcgtaggcctgctgctagaggcaatcccagggcatcatcacaaacaaa 305 ||||| |||||||| |||||||||||| ||||||| ||| ||| || |||||| || Sbjct: 293 tcaacattctgatcataggcctgctgccagaggcagtcctaggtcactgccacaaaataa 352 Query: 306 gtctacagaaccagacttgcaagcaccaaacccagttgtgactccacccctggcaaatgg 365 | ||||||| || | ||||||||||| |||||||||||| |||| || |||||||| Sbjct: 353 gcatacagaaacaaaattgcaagcaccgtgtccagttgtgactgcacctcttgcaaatgg 412 Query: 366 ttggcagtgggcatccaggcctcgcccatctggtcctgaaagca 409 || |||||||| | ||| | ||||| |||||||| |||| |||| Sbjct: 413 tttgcagtgggtacccaagtctcgctcatctggttctgagagca 456 Score = 46.1 bits (23), Expect = 0.31 Identities = 71/87 (81%) Strand = Plus / Plus Query: 335 acccagttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccat 394 |||||||||||||| || | || |||||||| | |||||||| ||||| ||||| ||| Sbjct: 514 acccagttgtgactgcaactcttgcaaatggcttgcagtgggtgcccaggtctcgctcat 573 Query: 395 ctggtcctgaaagcagcaaggatgatg 421 ||| || |||||| ||||||||||| Sbjct: 574 ctgactctcaaagcaacaaggatgatg 600 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 524 catctgagaaaagttttgagactcgcaaaa 553 |||||||||||| |||||||||||| |||| Sbjct: 805 catctgagaaaaattttgagactcgaaaaa 834
>ref|NW_001091927.1| Theileria annulata strain Ankara clone C9 Length = 1979170 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 797 taccatctggtgagcaatttgg 818 |||||||||||||||||||||| Sbjct: 1162487 taccatctggtgagcaatttgg 1162466
>ref|XM_947213.1| Theileria annulata strain Ankara pre-mRNA splicing factor (TA13035) partial mRNA Length = 2082 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 797 taccatctggtgagcaatttgg 818 |||||||||||||||||||||| Sbjct: 1903 taccatctggtgagcaatttgg 1882
>emb|Z68287.1|HSN38E12 Human DNA sequence from clone LL22NC03-38E12 on chromosome 22, complete sequence Length = 38932 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1185 agtgtgaatggtacacctggatttgt 1210 ||||||||||||||||||||| |||| Sbjct: 8532 agtgtgaatggtacacctggagttgt 8507
>gb|AC161423.1| Mus musculus BAC clone RP23-291E12 from chromosome 16, complete sequence Length = 226870 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 896 ttgaaaaagatgaagatgataa 917 |||||||||||||||||||||| Sbjct: 105905 ttgaaaaagatgaagatgataa 105884
>gb|AC137947.12| Mus musculus chromosome 5, clone RP23-362I3, complete sequence Length = 214295 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1162 cttctagatgatgtttaatgtg 1183 |||||||||||||||||||||| Sbjct: 61774 cttctagatgatgtttaatgtg 61753
>gb|AC131683.4| Mus musculus BAC clone RP23-359C21 from 16, complete sequence Length = 200615 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 896 ttgaaaaagatgaagatgataa 917 |||||||||||||||||||||| Sbjct: 141535 ttgaaaaagatgaagatgataa 141514
>gb|AC171726.2| Solanum lycopersicum chromosome 1 clone C01HBa0088L02, complete sequence Length = 111737 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1020 tgttgtttacataatattgct 1040 ||||||||||||||||||||| Sbjct: 65204 tgttgtttacataatattgct 65184
>ref|NM_001060777.1| Oryza sativa (japonica cultivar-group) Os04g0674700 (Os04g0674700) mRNA, complete cds Length = 1897 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 tccggcgatcgacgcggcggc 57 ||||||||||||||||||||| Sbjct: 73 tccggcgatcgacgcggcggc 93
>gb|CP000441.1| Burkholderia cepacia AMMD chromosome 2, complete sequence Length = 2646969 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 37 tccggcgatcgacgcggcggcgggc 61 |||||||||||||||| |||||||| Sbjct: 939432 tccggcgatcgacgcgccggcgggc 939456
>emb|CR382284.14| Zebrafish DNA sequence from clone DKEY-95H16 in linkage group 8, complete sequence Length = 205882 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 894 acttgaaaaagatgaagatga 914 ||||||||||||||||||||| Sbjct: 158033 acttgaaaaagatgaagatga 158053
>emb|CR925781.6| Zebrafish DNA sequence from clone DKEY-3B23 in linkage group 10, complete sequence Length = 202134 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 355 ctggcaaatggttggcagtgg 375 ||||||||||||||||||||| Sbjct: 115940 ctggcaaatggttggcagtgg 115960
>gb|AY780257.1| Danio rerio brain aromatase (cyp19b) gene, complete cds Length = 21120 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 19654 tgtttaatgtgaagtgtggct 19674
>gb|AC136974.11| Medicago truncatula clone mth2-22e9, complete sequence Length = 124037 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1014 atttgatgttgtttacataat 1034 ||||||||||||||||||||| Sbjct: 87722 atttgatgttgtttacataat 87742
>emb|BX571710.12| Zebrafish DNA sequence from clone DKEY-4A14 in linkage group 1, complete sequence Length = 145840 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 50737 tgtttaatgtgaagtgtggct 50757
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 tccggcgatcgacgcggcggc 57 ||||||||||||||||||||| Sbjct: 34481877 tccggcgatcgacgcggcggc 34481857
>emb|BX950209.14| Zebrafish DNA sequence from clone CH211-62K15 in linkage group 1, complete sequence Length = 135060 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 16695 tgtttaatgtgaagtgtggct 16675
>emb|BX784025.12| Zebrafish DNA sequence from clone DKEY-72L14 in linkage group 8, complete sequence Length = 257681 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 894 acttgaaaaagatgaagatga 914 ||||||||||||||||||||| Sbjct: 25163 acttgaaaaagatgaagatga 25183
>gb|AC026799.4| Homo sapiens chromosome 5 clone CTD-2366H10, complete sequence Length = 162918 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1086 tgatgtttaatgtgaagtgtg 1106 ||||||||||||||||||||| Sbjct: 36207 tgatgtttaatgtgaagtgtg 36227 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1170 tgatgtttaatgtgaagtgtg 1190 ||||||||||||||||||||| Sbjct: 36207 tgatgtttaatgtgaagtgtg 36227
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 ccggcgatcgacgcggcggcg 58 ||||||||||||||||||||| Sbjct: 955363 ccggcgatcgacgcggcggcg 955383
>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05, complete sequence Length = 164943 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 tccggcgatcgacgcggcggc 57 ||||||||||||||||||||| Sbjct: 99362 tccggcgatcgacgcggcggc 99342
>emb|BX248128.20| Zebrafish DNA sequence from clone CH211-198G14, complete sequence Length = 203829 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 109370 tgtttaatgtgaagtgtggct 109350 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 114898 tgtttaatgtgaagtgtggct 114878
>emb|CR293500.7| Zebrafish DNA sequence from clone DKEY-211I20 in linkage group 18, complete sequence Length = 164140 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 67730 tgtttaatgtgaagtgtggct 67710
>emb|CR318590.4| Zebrafish DNA sequence from clone CH211-227G21 in linkage group 19, complete sequence Length = 169599 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 73042 tgtttaatgtgaagtgtggct 73062 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 78552 tgtttaatgtgaagtgtggct 78572
>emb|BX666062.6| Zebrafish DNA sequence from clone DKEY-99O18 in linkage group 2, complete sequence Length = 233488 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 66628 tgtttaatgtgaagtgtggct 66648
>dbj|AK106615.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-H10, full insert sequence Length = 1897 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 tccggcgatcgacgcggcggc 57 ||||||||||||||||||||| Sbjct: 73 tccggcgatcgacgcggcggc 93
>emb|BX649633.13| Zebrafish DNA sequence from clone CH211-127A20 in linkage group 18, complete sequence Length = 164724 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 59313 tgtttaatgtgaagtgtggct 59333
>emb|BX649616.5| Zebrafish DNA sequence from clone CH211-165K17 in linkage group 18, complete sequence Length = 131062 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 48415 tgtttaatgtgaagtgtggct 48395
>emb|AL954697.15| Zebrafish DNA sequence from clone CH211-286K11 in linkage group 25, complete sequence Length = 134798 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 19654 tgtttaatgtgaagtgtggct 19674
>emb|BX294383.7| Zebrafish DNA sequence from clone DKEYP-35E5 in linkage group 4, complete sequence Length = 184004 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 3045 tgtttaatgtgaagtgtggct 3065 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1089 tgtttaatgtgaagtgtggct 1109 ||||||||||||||||||||| Sbjct: 8573 tgtttaatgtgaagtgtggct 8593 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 218,032,945 Number of extensions: 12351404 Number of successful extensions: 259313 Number of sequences better than 10.0: 37 Number of HSP's gapped: 259304 Number of HSP's successfully gapped: 84 Length of query: 1264 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1241 Effective length of database: 18,503,978,556 Effective search space: 22963437387996 Effective search space used: 22963437387996 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)