ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf39h01 |
|---|---|
| Clone Library Name | barley_pub |
>Q8CG48:SMC2_MOUSE Structural maintenance of chromosomes protein 2 - Mus musculus| (Mouse) Length = 1191 Score = 34.3 bits (77), Expect = 0.86 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Frame = +2 Query: 344 VKSGDADGYPKTEDELADEETLQRNLDRAIREEDYARAA------KIRDDLHVLHE--DT 499 V + + + LA EET ++ L ++ E+ A AA KI D LH L E + Sbjct: 309 VNTKSQSAFDLKKKNLASEETKRKELQNSMAEDSKALAAKEKEVKKITDGLHGLQEASNK 368 Query: 500 EASVLAANTRFYNAFKNG 553 +A LAA + +NA G Sbjct: 369 DAEALAAAQQHFNAVSAG 386
>Q49V39:SYC_STAS1 Cysteinyl-tRNA synthetase - Staphylococcus saprophyticus subsp.| saprophyticus (strain ATCC 15305 / DSM 20229) Length = 466 Score = 33.1 bits (74), Expect = 1.9 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Frame = +2 Query: 374 KTEDELADEET--LQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 511 K DEL DEE L + A +++D+ARA +IRD L +++ EDT V Sbjct: 411 KDSDELLDEEVEALIEERNNARKDKDFARADEIRDQLKEQNIILEDTPQGV 461
>Q9CCP1:UVRC_MYCLE UvrABC system protein C - Mycobacterium leprae| Length = 647 Score = 32.7 bits (73), Expect = 2.5 Identities = 25/81 (30%), Positives = 35/81 (43%) Frame = +2 Query: 260 CIRRLSAERIFAGVQIAASNFNRSRICHVKSGDADGYPKTEDELADEETLQRNLDRAIRE 439 C+ R+ AE+ QI A C SG D Y + L+R + A + Sbjct: 183 CVGRVGAEQ---HSQIVAD------FCDFLSGKTDRYARD---------LERKMSAAAEQ 224 Query: 440 EDYARAAKIRDDLHVLHEDTE 502 D+ RAA++RDDL L E Sbjct: 225 LDFERAARLRDDLFALKRAME 245
>Q8CTU1:SYC_STAES Cysteinyl-tRNA synthetase - Staphylococcus epidermidis (strain ATCC| 12228) Length = 466 Score = 32.3 bits (72), Expect = 3.3 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Frame = +2 Query: 323 NRSRICHVKSGDADGYP---KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL--- 478 NR + + D G P K +EL DE E L + A + +D+ARA +IRD L Sbjct: 391 NRFKEVYSIFSDVLGVPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKAR 450 Query: 479 HVLHEDTEASV 511 H++ EDT V Sbjct: 451 HIILEDTPQGV 461
>Q5HRM3:SYC_STAEQ Cysteinyl-tRNA synthetase - Staphylococcus epidermidis (strain ATCC| 35984 / RP62A) Length = 466 Score = 32.3 bits (72), Expect = 3.3 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Frame = +2 Query: 323 NRSRICHVKSGDADGYP---KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL--- 478 NR + + D G P K +EL DE E L + A + +D+ARA +IRD L Sbjct: 391 NRFKEVYSIFSDVLGVPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKAR 450 Query: 479 HVLHEDTEASV 511 H++ EDT V Sbjct: 451 HIILEDTPQGV 461
>Q7Z5L2:GIDRP_HUMAN Growth inhibition and differentiation-related protein 88 - Homo| sapiens (Human) Length = 792 Score = 32.3 bits (72), Expect = 3.3 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = +2 Query: 356 DADGYPKTEDELADEETLQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVLAANTRFY 535 D D P T ++ E+ + + E + D+LHV HE + +VLA T Sbjct: 304 DTDSIPATMGHISLSESTNDTVSPVMIRE-CEKNDSTADELHVKHEPPDTAVLAHETHRD 362 Query: 536 NAFKN-GDFT 562 + FKN GD T Sbjct: 363 SGFKNVGDIT 372
>O83485:UVRC_TREPA UvrABC system protein C - Treponema pallidum| Length = 691 Score = 31.6 bits (70), Expect = 5.6 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = +2 Query: 407 LQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVL 514 L++ + RA+R+E + AA+IRDD+ + T S++ Sbjct: 210 LEKRMKRAVRQEAFEAAARIRDDIQAIRCITHKSLV 245
>Q9Z512:UVRC_STRCO UvrABC system protein C - Streptomyces coelicolor| Length = 728 Score = 31.2 bits (69), Expect = 7.3 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +2 Query: 407 LQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVL 514 L+R + A E +Y RAA++RDD+ L + E S + Sbjct: 214 LERQMAEAAEEMEYERAARLRDDIGALKKAMEKSAV 249
>Q7VAZ8:SYS_PROMA Seryl-tRNA synthetase - Prochlorococcus marinus| Length = 425 Score = 31.2 bits (69), Expect = 7.3 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 368 YPKTEDELADEETLQ-RNLDRAIREEDYARAAKIRDDLHVLHEDTEASVLAANTRFYNAF 544 Y + D + + LQ RN ++ E Y +I ++L +L DTE SV A +RF F Sbjct: 113 YSECPDGKDENDNLQIRNWGNPLKGEGYKEHWEIAEELGLL--DTEKSVRIAKSRFVTLF 170 Query: 545 KNG 553 +G Sbjct: 171 NHG 173
>Q741E5:UVRC_MYCPA UvrABC system protein C - Mycobacterium paratuberculosis| Length = 647 Score = 30.8 bits (68), Expect = 9.6 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Frame = +2 Query: 260 CIRRLSAERIFAGVQIAASNFNRSRICHVKSGDADGYPKTEDELADEETLQRNLDRAIRE 439 CI R+SAE+ V C SG D + + L++ ++ A E Sbjct: 183 CIGRVSAEQHRQIVD---------DFCDFLSGKTDRFARE---------LEQQMNAAAAE 224 Query: 440 EDYARAAKIRDDLHVLHE--DTEASVLAANT-RFYNAFKNGDFTAMNSIWAKGDYVYVVH 610 D+ RAA++RDDL L + +A VL T AF + + A V V H Sbjct: 225 LDFERAARLRDDLGALKRAMEKQAVVLGDGTDADVVAFADDELEAA---------VQVFH 275 Query: 611 PGAGRISG 634 GR+ G Sbjct: 276 VRGGRVRG 283
>Q2JCI3:UVRC_FRASC UvrABC system protein C - Frankia sp. (strain CcI3)| Length = 705 Score = 30.8 bits (68), Expect = 9.6 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = +2 Query: 407 LQRNLDRAIREEDYARAAKIRDDLHVLHEDTE 502 L+R + +A + ++Y RAA++RDD+ L E Sbjct: 214 LEREMQQAAQAQEYERAARLRDDIGALRRAVE 245
>Q8NXY7:SYC_STAAW Cysteinyl-tRNA synthetase - Staphylococcus aureus (strain MW2)| Length = 466 Score = 30.8 bits (68), Expect = 9.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 374 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 511 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>Q6GBV8:SYC_STAAS Cysteinyl-tRNA synthetase - Staphylococcus aureus (strain MSSA476)| Length = 466 Score = 30.8 bits (68), Expect = 9.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 374 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 511 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>Q99W73:SYC_STAAN Cysteinyl-tRNA synthetase - Staphylococcus aureus (strain N315)| Length = 466 Score = 30.8 bits (68), Expect = 9.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 374 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 511 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>Q932G0:SYC_STAAM Cysteinyl-tRNA synthetase - Staphylococcus aureus (strain Mu50 /| ATCC 700699) Length = 466 Score = 30.8 bits (68), Expect = 9.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 374 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 511 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>Q5HIE5:SYC_STAAC Cysteinyl-tRNA synthetase - Staphylococcus aureus (strain COL)| Length = 466 Score = 30.8 bits (68), Expect = 9.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 374 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 511 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>Q2YSD1:SYC_STAAB Cysteinyl-tRNA synthetase - Staphylococcus aureus (strain bovine| RF122) Length = 466 Score = 30.8 bits (68), Expect = 9.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 374 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 511 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>Q2FJB0:SYC_STAA3 Cysteinyl-tRNA synthetase - Staphylococcus aureus (strain USA300)| Length = 466 Score = 30.8 bits (68), Expect = 9.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 374 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 511 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>P29701:FETUA_SHEEP Alpha-2-HS-glycoprotein precursor - Ovis aries (Sheep)| Length = 364 Score = 30.8 bits (68), Expect = 9.6 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Frame = -3 Query: 598 HIVSFSPDRVHCSKISILESVVES-C---ICCKDGSFSILMEDVQIIPDFGSTGIIFFPD 431 H++ +P V+CS E VE C + +DG FS+L PD PD Sbjct: 90 HVLDPTP-LVNCSVRQQTEHAVEGDCDIHVLKQDGQFSVLFTKCDSSPDSAEDVRKLCPD 148 Query: 430 SPVQITLKGFFVS*LVFSFWIAISIPTFNMANSGS----VEVGGCNLNPCKDSLRTE 272 P+ L S +V + +A++ TFN N+GS VE+ P S+ E Sbjct: 149 CPLLAPLNN---SQVVHAAEVALA--TFNAQNNGSYFQLVEISRAQFVPLPGSVSVE 200 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 192,160,009 Number of extensions: 4528012 Number of successful extensions: 12409 Number of sequences better than 10.0: 19 Number of HSP's gapped: 12401 Number of HSP's successfully gapped: 19 Length of query: 347 Length of database: 100,686,439 Length adjustment: 114 Effective length of query: 233 Effective length of database: 69,416,809 Effective search space: 16174116497 Effective search space used: 16174116497 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
