| Clone Name | FLbaf39h01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001050807.1| Oryza sativa (japonica cultivar-group) Os01g0753200 (Os01g0753200) mRNA, partial cds Length = 1061 Score = 349 bits (176), Expect = 1e-92 Identities = 437/524 (83%) Strand = Plus / Plus Query: 341 catgttaaaagtggggatgctgatggctatccaaaaactgaagacgagttagctgacgaa 400 |||||||||||||| ||||||||||| || |||| |||||||| || | |||||| Sbjct: 239 catgttaaaagtggagatgctgatggttacccaacgactgaagatttgtcaattgacgag 298 Query: 401 gaaacccttcagcgtaatttggacagggctatccgggaagaagattatgcccgtgctgcc 460 |||||||| ||||||||||| | | || |||| ||||||||||||| |||| ||||| Sbjct: 299 gaaaccctgcagcgtaatttacagacagccatccaggaagaagattattcccgggctgca 358 Query: 461 aaaatccgggatgatctgcacgtcctccatgaggatactgaagcttccgtccttgcagca 520 || || |||||||||||| | |||||||||| ||||| |||||||| ||||||||||| Sbjct: 359 aagataagggatgatctgcgcatcctccatgaagataccaaagcttccctccttgcagca 418 Query: 521 aatacacgattctacaacgctttcaagaatggagattttactgcaatgaactctatctgg 580 || ||||| || ||||| |||||||||||||| ||| || | || ||| ||||| | ||| Sbjct: 419 aacacacggttttacaatgctttcaagaatggcgatcttgcagcgatgtactctttatgg 478 Query: 581 gctaaaggagactatgtgtatgttgtccatcctggggcaggtcggatatccggttacgat 640 ||||| || ||| |||| |||||| ||||||||| || ||||||||||| ||||| || Sbjct: 479 gctaagggtgaccatgtatatgttatccatcctgctgcgggtcggatatcaggttatgac 538 Query: 641 gtggtcttgcaaagctgggagatggtttgcaacgcggattatgagttccctctaaacatt 700 |||||| ||||||||||||||||||| || ||| |||||||||||||| ||||||||| Sbjct: 539 gtggtcatgcaaagctgggagatggtatgtggcgcagattatgagttcccactaaacatt 598 Query: 701 gagcttaagaacatagaggttcatgtgcgtggtgaccttggttatgttacatgcttggag 760 || || || || ||||||||||||||| ||||||||||||||| || ||||||||||| Sbjct: 599 gatctgaaaaatgtagaggttcatgtgcatggtgaccttggttacgtcacatgcttggaa 658 Query: 761 ttggttaagaccaaaggaaaatcttgggggaagcaaattgccaccaacgtcttcgagaag 820 |||||||||||||||||| | | |||||||||||| | ||||| ||||||||||||||| Sbjct: 659 gtggttaagaccaaaggaagaacatgggggaagcaagtcgccacaaacgtcttcgagaag 718 Query: 821 atagatggcacatggtatatttgcattcaccatgcttcacacat 864 | |||||||||||| || || |||||||||| |||||||| Sbjct: 719 gttgatggcacatggcgcatgtgtgttcaccatgcatcacacat 762 Score = 48.1 bits (24), Expect = 0.064 Identities = 51/60 (85%) Strand = Plus / Plus Query: 149 gcgatgtcggcggcgcaggctgcgagcgccatctcgcggccgtccgcgagtgcgcggctc 208 |||||||| ||||||| ||||||||||| | | |||||||||||||| ||||||||| Sbjct: 46 gcgatgtctgcggcgccggctgcgagcggctggttgcggccgtccgcgaccgcgcggctc 105
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 349 bits (176), Expect = 1e-92 Identities = 437/524 (83%) Strand = Plus / Minus Query: 341 catgttaaaagtggggatgctgatggctatccaaaaactgaagacgagttagctgacgaa 400 |||||||||||||| ||||||||||| || |||| |||||||| || | |||||| Sbjct: 31602189 catgttaaaagtggagatgctgatggttacccaacgactgaagatttgtcaattgacgag 31602130 Query: 401 gaaacccttcagcgtaatttggacagggctatccgggaagaagattatgcccgtgctgcc 460 |||||||| ||||||||||| | | || |||| ||||||||||||| |||| ||||| Sbjct: 31602129 gaaaccctgcagcgtaatttacagacagccatccaggaagaagattattcccgggctgca 31602070 Query: 461 aaaatccgggatgatctgcacgtcctccatgaggatactgaagcttccgtccttgcagca 520 || || |||||||||||| | |||||||||| ||||| |||||||| ||||||||||| Sbjct: 31602069 aagataagggatgatctgcgcatcctccatgaagataccaaagcttccctccttgcagca 31602010 Query: 521 aatacacgattctacaacgctttcaagaatggagattttactgcaatgaactctatctgg 580 || ||||| || ||||| |||||||||||||| ||| || | || ||| ||||| | ||| Sbjct: 31602009 aacacacggttttacaatgctttcaagaatggcgatcttgcagcgatgtactctttatgg 31601950 Query: 581 gctaaaggagactatgtgtatgttgtccatcctggggcaggtcggatatccggttacgat 640 ||||| || ||| |||| |||||| ||||||||| || ||||||||||| ||||| || Sbjct: 31601949 gctaagggtgaccatgtatatgttatccatcctgctgcgggtcggatatcaggttatgac 31601890 Query: 641 gtggtcttgcaaagctgggagatggtttgcaacgcggattatgagttccctctaaacatt 700 |||||| ||||||||||||||||||| || ||| |||||||||||||| ||||||||| Sbjct: 31601889 gtggtcatgcaaagctgggagatggtatgtggcgcagattatgagttcccactaaacatt 31601830 Query: 701 gagcttaagaacatagaggttcatgtgcgtggtgaccttggttatgttacatgcttggag 760 || || || || ||||||||||||||| ||||||||||||||| || ||||||||||| Sbjct: 31601829 gatctgaaaaatgtagaggttcatgtgcatggtgaccttggttacgtcacatgcttggaa 31601770 Query: 761 ttggttaagaccaaaggaaaatcttgggggaagcaaattgccaccaacgtcttcgagaag 820 |||||||||||||||||| | | |||||||||||| | ||||| ||||||||||||||| Sbjct: 31601769 gtggttaagaccaaaggaagaacatgggggaagcaagtcgccacaaacgtcttcgagaag 31601710 Query: 821 atagatggcacatggtatatttgcattcaccatgcttcacacat 864 | |||||||||||| || || |||||||||| |||||||| Sbjct: 31601709 gttgatggcacatggcgcatgtgtgttcaccatgcatcacacat 31601666 Score = 48.1 bits (24), Expect = 0.064 Identities = 51/60 (85%) Strand = Plus / Minus Query: 149 gcgatgtcggcggcgcaggctgcgagcgccatctcgcggccgtccgcgagtgcgcggctc 208 |||||||| ||||||| ||||||||||| | | |||||||||||||| ||||||||| Sbjct: 31602909 gcgatgtctgcggcgccggctgcgagcggctggttgcggccgtccgcgaccgcgcggctc 31602850 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tagcctgcctgcgcggctgcg 133 ||||||||||||||||||||| Sbjct: 7691310 tagcctgcctgcgcggctgcg 7691290
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 349 bits (176), Expect = 1e-92 Identities = 437/524 (83%) Strand = Plus / Minus Query: 341 catgttaaaagtggggatgctgatggctatccaaaaactgaagacgagttagctgacgaa 400 |||||||||||||| ||||||||||| || |||| |||||||| || | |||||| Sbjct: 15921 catgttaaaagtggagatgctgatggttacccaacgactgaagatttgtcaattgacgag 15862 Query: 401 gaaacccttcagcgtaatttggacagggctatccgggaagaagattatgcccgtgctgcc 460 |||||||| ||||||||||| | | || |||| ||||||||||||| |||| ||||| Sbjct: 15861 gaaaccctgcagcgtaatttacagacagccatccaggaagaagattattcccgggctgca 15802 Query: 461 aaaatccgggatgatctgcacgtcctccatgaggatactgaagcttccgtccttgcagca 520 || || |||||||||||| | |||||||||| ||||| |||||||| ||||||||||| Sbjct: 15801 aagataagggatgatctgcgcatcctccatgaagataccaaagcttccctccttgcagca 15742 Query: 521 aatacacgattctacaacgctttcaagaatggagattttactgcaatgaactctatctgg 580 || ||||| || ||||| |||||||||||||| ||| || | || ||| ||||| | ||| Sbjct: 15741 aacacacggttttacaatgctttcaagaatggcgatcttgcagcgatgtactctttatgg 15682 Query: 581 gctaaaggagactatgtgtatgttgtccatcctggggcaggtcggatatccggttacgat 640 ||||| || ||| |||| |||||| ||||||||| || ||||||||||| ||||| || Sbjct: 15681 gctaagggtgaccatgtatatgttatccatcctgctgcgggtcggatatcaggttatgac 15622 Query: 641 gtggtcttgcaaagctgggagatggtttgcaacgcggattatgagttccctctaaacatt 700 |||||| ||||||||||||||||||| || ||| |||||||||||||| ||||||||| Sbjct: 15621 gtggtcatgcaaagctgggagatggtatgtggcgcagattatgagttcccactaaacatt 15562 Query: 701 gagcttaagaacatagaggttcatgtgcgtggtgaccttggttatgttacatgcttggag 760 || || || || ||||||||||||||| ||||||||||||||| || ||||||||||| Sbjct: 15561 gatctgaaaaatgtagaggttcatgtgcatggtgaccttggttacgtcacatgcttggaa 15502 Query: 761 ttggttaagaccaaaggaaaatcttgggggaagcaaattgccaccaacgtcttcgagaag 820 |||||||||||||||||| | | |||||||||||| | ||||| ||||||||||||||| Sbjct: 15501 gtggttaagaccaaaggaagaacatgggggaagcaagtcgccacaaacgtcttcgagaag 15442 Query: 821 atagatggcacatggtatatttgcattcaccatgcttcacacat 864 | |||||||||||| || || |||||||||| |||||||| Sbjct: 15441 gttgatggcacatggcgcatgtgtgttcaccatgcatcacacat 15398 Score = 48.1 bits (24), Expect = 0.064 Identities = 51/60 (85%) Strand = Plus / Minus Query: 149 gcgatgtcggcggcgcaggctgcgagcgccatctcgcggccgtccgcgagtgcgcggctc 208 |||||||| ||||||| ||||||||||| | | |||||||||||||| ||||||||| Sbjct: 16641 gcgatgtctgcggcgccggctgcgagcggctggttgcggccgtccgcgaccgcgcggctc 16582
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 349 bits (176), Expect = 1e-92 Identities = 437/524 (83%) Strand = Plus / Minus Query: 341 catgttaaaagtggggatgctgatggctatccaaaaactgaagacgagttagctgacgaa 400 |||||||||||||| ||||||||||| || |||| |||||||| || | |||||| Sbjct: 115212 catgttaaaagtggagatgctgatggttacccaacgactgaagatttgtcaattgacgag 115153 Query: 401 gaaacccttcagcgtaatttggacagggctatccgggaagaagattatgcccgtgctgcc 460 |||||||| ||||||||||| | | || |||| ||||||||||||| |||| ||||| Sbjct: 115152 gaaaccctgcagcgtaatttacagacagccatccaggaagaagattattcccgggctgca 115093 Query: 461 aaaatccgggatgatctgcacgtcctccatgaggatactgaagcttccgtccttgcagca 520 || || |||||||||||| | |||||||||| ||||| |||||||| ||||||||||| Sbjct: 115092 aagataagggatgatctgcgcatcctccatgaagataccaaagcttccctccttgcagca 115033 Query: 521 aatacacgattctacaacgctttcaagaatggagattttactgcaatgaactctatctgg 580 || ||||| || ||||| |||||||||||||| ||| || | || ||| ||||| | ||| Sbjct: 115032 aacacacggttttacaatgctttcaagaatggcgatcttgcagcgatgtactctttatgg 114973 Query: 581 gctaaaggagactatgtgtatgttgtccatcctggggcaggtcggatatccggttacgat 640 ||||| || ||| |||| |||||| ||||||||| || ||||||||||| ||||| || Sbjct: 114972 gctaagggtgaccatgtatatgttatccatcctgctgcgggtcggatatcaggttatgac 114913 Query: 641 gtggtcttgcaaagctgggagatggtttgcaacgcggattatgagttccctctaaacatt 700 |||||| ||||||||||||||||||| || ||| |||||||||||||| ||||||||| Sbjct: 114912 gtggtcatgcaaagctgggagatggtatgtggcgcagattatgagttcccactaaacatt 114853 Query: 701 gagcttaagaacatagaggttcatgtgcgtggtgaccttggttatgttacatgcttggag 760 || || || || ||||||||||||||| ||||||||||||||| || ||||||||||| Sbjct: 114852 gatctgaaaaatgtagaggttcatgtgcatggtgaccttggttacgtcacatgcttggaa 114793 Query: 761 ttggttaagaccaaaggaaaatcttgggggaagcaaattgccaccaacgtcttcgagaag 820 |||||||||||||||||| | | |||||||||||| | ||||| ||||||||||||||| Sbjct: 114792 gtggttaagaccaaaggaagaacatgggggaagcaagtcgccacaaacgtcttcgagaag 114733 Query: 821 atagatggcacatggtatatttgcattcaccatgcttcacacat 864 | |||||||||||| || || |||||||||| |||||||| Sbjct: 114732 gttgatggcacatggcgcatgtgtgttcaccatgcatcacacat 114689 Score = 48.1 bits (24), Expect = 0.064 Identities = 51/60 (85%) Strand = Plus / Minus Query: 149 gcgatgtcggcggcgcaggctgcgagcgccatctcgcggccgtccgcgagtgcgcggctc 208 |||||||| ||||||| ||||||||||| | | |||||||||||||| ||||||||| Sbjct: 115932 gcgatgtctgcggcgccggctgcgagcggctggttgcggccgtccgcgaccgcgcggctc 115873
>dbj|AK099571.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035E10, full insert sequence Length = 1066 Score = 349 bits (176), Expect = 1e-92 Identities = 437/524 (83%) Strand = Plus / Plus Query: 341 catgttaaaagtggggatgctgatggctatccaaaaactgaagacgagttagctgacgaa 400 |||||||||||||| ||||||||||| || |||| |||||||| || | |||||| Sbjct: 242 catgttaaaagtggagatgctgatggttacccaacgactgaagatttgtcaattgacgag 301 Query: 401 gaaacccttcagcgtaatttggacagggctatccgggaagaagattatgcccgtgctgcc 460 |||||||| ||||||||||| | | || |||| ||||||||||||| |||| ||||| Sbjct: 302 gaaaccctgcagcgtaatttacagacagccatccaggaagaagattattcccgggctgca 361 Query: 461 aaaatccgggatgatctgcacgtcctccatgaggatactgaagcttccgtccttgcagca 520 || || |||||||||||| | |||||||||| ||||| |||||||| ||||||||||| Sbjct: 362 aagataagggatgatctgcgcatcctccatgaagataccaaagcttccctccttgcagca 421 Query: 521 aatacacgattctacaacgctttcaagaatggagattttactgcaatgaactctatctgg 580 || ||||| || ||||| |||||||||||||| ||| || | || ||| ||||| | ||| Sbjct: 422 aacacacggttttacaatgctttcaagaatggcgatcttgcagcgatgtactctttatgg 481 Query: 581 gctaaaggagactatgtgtatgttgtccatcctggggcaggtcggatatccggttacgat 640 ||||| || ||| |||| |||||| ||||||||| || ||||||||||| ||||| || Sbjct: 482 gctaagggtgaccatgtatatgttatccatcctgctgcgggtcggatatcaggttatgac 541 Query: 641 gtggtcttgcaaagctgggagatggtttgcaacgcggattatgagttccctctaaacatt 700 |||||| ||||||||||||||||||| || ||| |||||||||||||| ||||||||| Sbjct: 542 gtggtcatgcaaagctgggagatggtatgtggcgcagattatgagttcccactaaacatt 601 Query: 701 gagcttaagaacatagaggttcatgtgcgtggtgaccttggttatgttacatgcttggag 760 || || || || ||||||||||||||| ||||||||||||||| || ||||||||||| Sbjct: 602 gatctgaaaaatgtagaggttcatgtgcatggtgaccttggttacgtcacatgcttggaa 661 Query: 761 ttggttaagaccaaaggaaaatcttgggggaagcaaattgccaccaacgtcttcgagaag 820 |||||||||||||||||| | | |||||||||||| | ||||| ||||||||||||||| Sbjct: 662 gtggttaagaccaaaggaagaacatgggggaagcaagtcgccacaaacgtcttcgagaag 721 Query: 821 atagatggcacatggtatatttgcattcaccatgcttcacacat 864 | |||||||||||| || || |||||||||| |||||||| Sbjct: 722 gttgatggcacatggcgcatgtgtgttcaccatgcatcacacat 765 Score = 48.1 bits (24), Expect = 0.064 Identities = 51/60 (85%) Strand = Plus / Plus Query: 149 gcgatgtcggcggcgcaggctgcgagcgccatctcgcggccgtccgcgagtgcgcggctc 208 |||||||| ||||||| ||||||||||| | | |||||||||||||| ||||||||| Sbjct: 49 gcgatgtctgcggcgccggctgcgagcggctggttgcggccgtccgcgaccgcgcggctc 108
>emb|CT830147.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA033D08, full insert sequence Length = 1016 Score = 87.7 bits (44), Expect = 7e-14 Identities = 149/184 (80%) Strand = Plus / Plus Query: 594 atgtgtatgttgtccatcctggggcaggtcggatatccggttacgatgtggtcttgcaaa 653 ||||||| ||||| |||||| |||||| |||||||| || ||||| |||| |||| | Sbjct: 455 atgtgtacgttgttcatccttcggcaggccggatatcgggctacgacatggtgatgcaga 514 Query: 654 gctgggagatggtttgcaacgcggattatgagttccctctaaacattgagcttaagaaca 713 ||||||||||||| ||| ||||||| || ||||||||||| | ||||| || || | Sbjct: 515 gctgggagatggtgtgcgacgcggactacgagttccctctccagattgatctgcaggatg 574 Query: 714 tagaggttcatgtgcgtggtgaccttggttatgttacatgcttggagttggttaagacca 773 | ||||| |||||| | ||||| ||||| ||||| || ||| ||||| |||||||||||| Sbjct: 575 ttgaggtccatgtgagaggtgatcttgggtatgtgacctgcctggagctggttaagacca 634 Query: 774 aagg 777 |||| Sbjct: 635 aagg 638
>ref|NM_001054883.1| Oryza sativa (japonica cultivar-group) Os02g0788500 (Os02g0788500) mRNA, complete cds Length = 1044 Score = 87.7 bits (44), Expect = 7e-14 Identities = 149/184 (80%) Strand = Plus / Plus Query: 594 atgtgtatgttgtccatcctggggcaggtcggatatccggttacgatgtggtcttgcaaa 653 ||||||| ||||| |||||| |||||| |||||||| || ||||| |||| |||| | Sbjct: 454 atgtgtacgttgttcatccttcggcaggccggatatcgggctacgacatggtgatgcaga 513 Query: 654 gctgggagatggtttgcaacgcggattatgagttccctctaaacattgagcttaagaaca 713 ||||||||||||| ||| ||||||| || ||||||||||| | ||||| || || | Sbjct: 514 gctgggagatggtgtgcgacgcggactacgagttccctctccagattgatctgcaggatg 573 Query: 714 tagaggttcatgtgcgtggtgaccttggttatgttacatgcttggagttggttaagacca 773 | ||||| |||||| | ||||| ||||| ||||| || ||| ||||| |||||||||||| Sbjct: 574 ttgaggtccatgtgagaggtgatcttgggtatgtgacctgcctggagctggttaagacca 633 Query: 774 aagg 777 |||| Sbjct: 634 aagg 637
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 87.7 bits (44), Expect = 7e-14 Identities = 149/184 (80%) Strand = Plus / Minus Query: 594 atgtgtatgttgtccatcctggggcaggtcggatatccggttacgatgtggtcttgcaaa 653 ||||||| ||||| |||||| |||||| |||||||| || ||||| |||| |||| | Sbjct: 33515084 atgtgtacgttgttcatccttcggcaggccggatatcgggctacgacatggtgatgcaga 33515025 Query: 654 gctgggagatggtttgcaacgcggattatgagttccctctaaacattgagcttaagaaca 713 ||||||||||||| ||| ||||||| || ||||||||||| | ||||| || || | Sbjct: 33515024 gctgggagatggtgtgcgacgcggactacgagttccctctccagattgatctgcaggatg 33514965 Query: 714 tagaggttcatgtgcgtggtgaccttggttatgttacatgcttggagttggttaagacca 773 | ||||| |||||| | ||||| ||||| ||||| || ||| ||||| |||||||||||| Sbjct: 33514964 ttgaggtccatgtgagaggtgatcttgggtatgtgacctgcctggagctggttaagacca 33514905 Query: 774 aagg 777 |||| Sbjct: 33514904 aagg 33514901
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0054K20 Length = 153584 Score = 87.7 bits (44), Expect = 7e-14 Identities = 149/184 (80%) Strand = Plus / Minus Query: 594 atgtgtatgttgtccatcctggggcaggtcggatatccggttacgatgtggtcttgcaaa 653 ||||||| ||||| |||||| |||||| |||||||| || ||||| |||| |||| | Sbjct: 89959 atgtgtacgttgttcatccttcggcaggccggatatcgggctacgacatggtgatgcaga 89900 Query: 654 gctgggagatggtttgcaacgcggattatgagttccctctaaacattgagcttaagaaca 713 ||||||||||||| ||| ||||||| || ||||||||||| | ||||| || || | Sbjct: 89899 gctgggagatggtgtgcgacgcggactacgagttccctctccagattgatctgcaggatg 89840 Query: 714 tagaggttcatgtgcgtggtgaccttggttatgttacatgcttggagttggttaagacca 773 | ||||| |||||| | ||||| ||||| ||||| || ||| ||||| |||||||||||| Sbjct: 89839 ttgaggtccatgtgagaggtgatcttgggtatgtgacctgcctggagctggttaagacca 89780 Query: 774 aagg 777 |||| Sbjct: 89779 aagg 89776
>dbj|AK104526.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H04, full insert sequence Length = 972 Score = 87.7 bits (44), Expect = 7e-14 Identities = 149/184 (80%) Strand = Plus / Plus Query: 594 atgtgtatgttgtccatcctggggcaggtcggatatccggttacgatgtggtcttgcaaa 653 ||||||| ||||| |||||| |||||| |||||||| || ||||| |||| |||| | Sbjct: 440 atgtgtacgttgttcatccttcggcaggccggatatcgggctacgacatggtgatgcaga 499 Query: 654 gctgggagatggtttgcaacgcggattatgagttccctctaaacattgagcttaagaaca 713 ||||||||||||| ||| ||||||| || ||||||||||| | ||||| || || | Sbjct: 500 gctgggagatggtgtgcgacgcggactacgagttccctctccagattgatctgcaggatg 559 Query: 714 tagaggttcatgtgcgtggtgaccttggttatgttacatgcttggagttggttaagacca 773 | ||||| |||||| | ||||| ||||| ||||| || ||| ||||| |||||||||||| Sbjct: 560 ttgaggtccatgtgagaggtgatcttgggtatgtgacctgcctggagctggttaagacca 619 Query: 774 aagg 777 |||| Sbjct: 620 aagg 623
>dbj|AK104117.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-A04, full insert sequence Length = 984 Score = 87.7 bits (44), Expect = 7e-14 Identities = 149/184 (80%) Strand = Plus / Plus Query: 594 atgtgtatgttgtccatcctggggcaggtcggatatccggttacgatgtggtcttgcaaa 653 ||||||| ||||| |||||| |||||| |||||||| || ||||| |||| |||| | Sbjct: 461 atgtgtacgttgttcatccttcggcaggccggatatcgggctacgacatggtgatgcaga 520 Query: 654 gctgggagatggtttgcaacgcggattatgagttccctctaaacattgagcttaagaaca 713 ||||||||||||| ||| ||||||| || ||||||||||| | ||||| || || | Sbjct: 521 gctgggagatggtgtgcgacgcggactacgagttccctctccagattgatctgcaggatg 580 Query: 714 tagaggttcatgtgcgtggtgaccttggttatgttacatgcttggagttggttaagacca 773 | ||||| |||||| | ||||| ||||| ||||| || ||| ||||| |||||||||||| Sbjct: 581 ttgaggtccatgtgagaggtgatcttgggtatgtgacctgcctggagctggttaagacca 640 Query: 774 aagg 777 |||| Sbjct: 641 aagg 644
>dbj|AK061452.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-F07, full insert sequence Length = 1044 Score = 87.7 bits (44), Expect = 7e-14 Identities = 149/184 (80%) Strand = Plus / Plus Query: 594 atgtgtatgttgtccatcctggggcaggtcggatatccggttacgatgtggtcttgcaaa 653 ||||||| ||||| |||||| |||||| |||||||| || ||||| |||| |||| | Sbjct: 454 atgtgtacgttgttcatccttcggcaggccggatatcgggctacgacatggtgatgcaga 513 Query: 654 gctgggagatggtttgcaacgcggattatgagttccctctaaacattgagcttaagaaca 713 ||||||||||||| ||| ||||||| || ||||||||||| | ||||| || || | Sbjct: 514 gctgggagatggtgtgcgacgcggactacgagttccctctccagattgatctgcaggatg 573 Query: 714 tagaggttcatgtgcgtggtgaccttggttatgttacatgcttggagttggttaagacca 773 | ||||| |||||| | ||||| ||||| ||||| || ||| ||||| |||||||||||| Sbjct: 574 ttgaggtccatgtgagaggtgatcttgggtatgtgacctgcctggagctggttaagacca 633 Query: 774 aagg 777 |||| Sbjct: 634 aagg 637
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 44.1 bits (22), Expect = 1.00 Identities = 25/26 (96%) Strand = Plus / Plus Query: 138 cttatttcccggcgatgtcggcggcg 163 ||||||||||||||| |||||||||| Sbjct: 2483857 cttatttcccggcgaggtcggcggcg 2483882
>emb|AL646097.25| Mouse DNA sequence from clone RP23-338M9 on chromosome 11 Contains the 3' end of the Gas7 gene for growth arrest specific 7, the Rcvrn gene for recoverin, the Glp2r gene for glucagon-like peptide 2 receptor, a novel gene and the gene for a novel protein (1110001P11Rik), complete sequence Length = 212636 Score = 44.1 bits (22), Expect = 1.00 Identities = 25/26 (96%) Strand = Plus / Plus Query: 500 gaagcttccgtccttgcagcaaatac 525 |||||||||||||| ||||||||||| Sbjct: 36166 gaagcttccgtcctcgcagcaaatac 36191
>gb|AC102895.7| Mus musculus chromosome 15, clone RP24-356D22, complete sequence Length = 165778 Score = 44.1 bits (22), Expect = 1.00 Identities = 25/26 (96%) Strand = Plus / Minus Query: 116 cctgcctgcgcggctgcgacgactta 141 ||||||||||||||||||| |||||| Sbjct: 37879 cctgcctgcgcggctgcgatgactta 37854
>emb|AM236084.1| Rhizobium leguminosarum bv. viciae plasmid pRL10 complete genome, strain 3841 Length = 488135 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 155 tcggcggcgcaggctgcgagcgcca 179 ||||||||| ||||||||||||||| Sbjct: 229588 tcggcggcgaaggctgcgagcgcca 229564
>gb|AC145469.3| Mus musculus BAC clone RP24-88I20 from chromosome Y, complete sequence Length = 205939 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 953 tatgactggaatttactattg 973 ||||||||||||||||||||| Sbjct: 62454 tatgactggaatttactattg 62434
>gb|AC132872.17| Homo sapiens chromosome 17, clone RP13-516M14, complete sequence Length = 171569 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 880 tgacactttctggtggtttat 900 ||||||||||||||||||||| Sbjct: 17032 tgacactttctggtggtttat 17052
>gb|AC021580.9| Homo sapiens chromosome 9, clone RP11-1091N2, complete sequence Length = 210557 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 815 gagaagatagatggcacatgg 835 ||||||||||||||||||||| Sbjct: 112579 gagaagatagatggcacatgg 112599
>gb|AC175462.3| Mus musculus BAC clone RP24-24E12 from chromosome y, complete sequence Length = 202215 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 953 tatgactggaatttactattg 973 ||||||||||||||||||||| Sbjct: 8171 tatgactggaatttactattg 8191
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 agagaggcgagagaggggagt 85 ||||||||||||||||||||| Sbjct: 4586282 agagaggcgagagaggggagt 4586302
>emb|AL355607.10| Human DNA sequence from clone RP11-367F23 on chromosome 9 Contains a novel gene, complete sequence Length = 113308 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 815 gagaagatagatggcacatgg 835 ||||||||||||||||||||| Sbjct: 60826 gagaagatagatggcacatgg 60846
>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0086P08 Length = 145312 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tagcctgcctgcgcggctgcg 133 ||||||||||||||||||||| Sbjct: 101886 tagcctgcctgcgcggctgcg 101866
>gb|AC132938.9| Homo sapiens chromosome 17, clone RP13-20L14, complete sequence Length = 154252 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 880 tgacactttctggtggtttat 900 ||||||||||||||||||||| Sbjct: 137874 tgacactttctggtggtttat 137894
>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0681H07 Length = 144722 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 agagaggcgagagaggggagt 85 ||||||||||||||||||||| Sbjct: 39151 agagaggcgagagaggggagt 39171
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 agagaggcgagagaggggagt 85 ||||||||||||||||||||| Sbjct: 129656 agagaggcgagagaggggagt 129676
>dbj|BS000077.1| Pan troglodytes chromosome 22 clone:RP43-076N07, map 22, complete sequences Length = 186185 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 837 atatttgcattcaccatgcttcaca 861 |||||||| |||||||||||||||| Sbjct: 3887 atatttgccttcaccatgcttcaca 3911
>dbj|BS000076.1| Pan troglodytes chromosome 22 clone:PTB-096O09, map 22, complete sequences Length = 186284 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 837 atatttgcattcaccatgcttcaca 861 |||||||| |||||||||||||||| Sbjct: 152754 atatttgccttcaccatgcttcaca 152778
>dbj|AP001683.1| Homo sapiens genomic DNA, chromosome 21q, section 27/105 Length = 340000 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 837 atatttgcattcaccatgcttcaca 861 |||||||| |||||||||||||||| Sbjct: 218757 atatttgccttcaccatgcttcaca 218781
>dbj|AP000951.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B650I18, LL56-APP region, complete sequence Length = 41170 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 837 atatttgcattcaccatgcttcaca 861 |||||||| |||||||||||||||| Sbjct: 18408 atatttgccttcaccatgcttcaca 18432 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 176,015,928 Number of extensions: 9510751 Number of successful extensions: 214023 Number of sequences better than 10.0: 30 Number of HSP's gapped: 214008 Number of HSP's successfully gapped: 43 Length of query: 1041 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1018 Effective length of database: 18,503,978,556 Effective search space: 18837050170008 Effective search space used: 18837050170008 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)