ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf39c19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001071081.1| Oryza sativa (japonica cultivar-group) Os10g0400900 (Os10g0400900) mRNA, partial cds Length = 3108 Score = 1033 bits (521), Expect = 0.0 Identities = 1115/1313 (84%) Strand = Plus / Plus Query: 517 gcaatcagatgcaaggaggtttgaccagccctggtgcgctctctcatgcttatgtacaac 576 ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct: 455 gcaatcagatgcaaggaggtttgggtagccctggtgctctgtctcatgcttatgtacaac 514 Query: 577 atcctccactacggtgtgacattccagatattaaggggctattctatgatgatgcgaata 636 ||||||| ||||| |||||||| ||||| || ||||| || ||||||||||| |||| Sbjct: 515 atcctcctctacgatgtgacataccagacatacgtgggctgttttatgatgatgctaata 574 Query: 637 agtttcttgtagccccaacagctgaccggatattatactggaagatagcttcatctactc 696 |||| ||| | || ||||| ||||| |||||||||||||||||||||| | ||||||||| Sbjct: 575 agttccttatcgctccaactgctgatcggatattatactggaagatagttccatctactc 634 Query: 697 aatctgggcctccaaactctgatccaattaatgaaggccccatcttatcagttcgatttt 756 | |||| ||||| ||||||||||| | ||||| || || | ||||||||||||| || Sbjct: 635 cagctggacctccgaactctgatcctgtaaatgatggacctgttttatcagttcgatatt 694 Query: 757 ctctggatcagaaagccatagggattcagcgatccagtcatgaagtcgagtttagaaata 816 | ||||||| ||||||||||||||| || ||||||| |||||| || || |||| ||||| Sbjct: 695 ccctggatctgaaagccatagggatacaacgatccaatcatgaggttgaatttataaata 754 Query: 817 gagaaacaggggaaggctgtagtaagaagtgcagagcagattctgaaaccatactgggat 876 | |||||||| || ||||| ||| ||||||||||| ||||||||||| ||||| || | Sbjct: 755 gggaaacaggacaaacctgtaataaaaagtgcagagctgattctgaaactatacttggct 814 Query: 877 ttttctggactgactgtcccacttgtgatgtcataattataaaaacaagtgggctagatc 936 |||| ||||| ||||| |||||||||||||||||||| |||||||||||||| || |||| Sbjct: 815 ttttttggacagactgccccacttgtgatgtcataataataaaaacaagtggcctggatc 874 Query: 937 tgcttgtctatgagccccaatcaaatgctcttcggttggtggagtcaaaaaagtgcaatg 996 || ||| ||||| || |||||||||||||||| ||||| || ||||| ||| ||||| Sbjct: 875 tgtttgcttatgaacctcaatcaaatgctcttcacttggtagactcaaagaagatcaatg 934 Query: 997 ccacctggtatctttacactcatgaaagcaggttacttcttcttgcatctggaatgcaat 1056 | ||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct: 935 tgagctggtatttttacactcatgaaagtaggttgattcttcttgcttcaggaatgcaat 994 Query: 1057 gtacgctgttcactggatatcagttttctgctggtgggatcgtcaaattacctaagtttg 1116 | || || || ||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 995 gcacactatttactggatatcagttttctgctggtgggattgtcaaattgcctaagtttg 1054 Query: 1117 agatggtgatgtctaaatccgaagcaaataacaagcctgtcctagctgctgccgatgttc 1176 ||||| ||| ||||| |||||||| ||||| ||||| |||||||||| ||||||| Sbjct: 1055 agatgacaatgactaaaagtgaagcaaacaacaaacctgttctagctgctgatgatgttc 1114 Query: 1177 acattgtaacagtgtatggtaggatttactgcttgcagctggatagagttggcatggcat 1236 | | |||||||| |||||||||||||| ||||||||||| || |||||| | ||| ||| Sbjct: 1115 ataccgtaacagtctatggtaggatttattgcttgcagcttgacagagttagtatgacat 1174 Query: 1237 tgaacctgtaccgattttaccgcgatgctgttgtacaacagggtactctcccagtatatt 1296 ||||| |||| || || ||||| |||||||||||||||||||||||||| ||| |||| Sbjct: 1175 tgaacttgtatcgtttctaccgtgatgctgttgtacaacagggtactctgccaacttatt 1234 Query: 1297 caagcagagttgcggttagtgcagttgacaatataatcatggtccatcaaattgatgcaa 1356 |||| ||| |||| |||||||| |||||||| ||||||||||| || ||||| ||||||| Sbjct: 1235 caagtagaattgcagttagtgcggttgacaacataatcatggttcaccaaatagatgcaa 1294 Query: 1357 aagttgtcatactttatgatgtatttatggattcttacgcaccaatatctgcaccacttc 1416 | ||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||||| | Sbjct: 1295 aggttgtcatactatatgatgtttttatggactcttatgcaccaatttctgcaccactcc 1354 Query: 1417 cactgcttgtgagaggactgcccagcaatagtaagcaagcagcacagtctgcagatcagc 1476 | ||||||||||| || ||||| ||||||| ||||||| |||| || || ||||| | Sbjct: 1355 cgctgcttgtgagggggctgcctagcaataataagcaatcagctcaacctccagatagcc 1414 Query: 1477 aatcaagtgcatatggcgggactttatatggagaaggttggaactttctcattcctgacc 1536 |||| ||||||||||| |||||| | |||||||||||||||| ||||||||||||||||| Sbjct: 1415 aatctagtgcatatggtgggactctctatggagaaggttggagctttctcattcctgacc 1474 Query: 1537 tcatctgtgatgctgagaatggactactctggaaacttcatttagatctggaggctattg 1596 || ||||||||| |||||| || || | ||||||||||||||||| || |||||||||| Sbjct: 1475 tcgtctgtgatgttgagaacgggctcttatggaaacttcatttagacctagaggctattg 1534 Query: 1597 ctgctagcacttctgatgctccttcaattttggaattccttcagagacgaaagtctgacc 1656 | ||||| || ||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 1535 ccgctagtacatctgatgctcctttgattctggaattccttcagagacgaaagtctgacc 1594 Query: 1657 tgagtatggttaagacactaagcctcgctatagttcgaacaaccatcttggaaaggagac 1716 || ||||||||||| |||||||| |||||||| || || | |||| |||| ||||||| Sbjct: 1595 ctagcatggttaagactctaagccttgctatagtccggactatcatcctggagaggagac 1654 Query: 1717 caataactttggttgcaaaggcaatggatatcattcttgattcatactcccgtttgatga 1776 |||| ||| |||||||||||||||||||| | |||||||||| || || ||| |||||| Sbjct: 1655 caattactatggttgcaaaggcaatggatgttgttcttgattcctattctcgtctgatga 1714 Query: 1777 aaatgggaggcggtgccgctggggttaggaggacgtctgagcaaaaccaacag 1829 |||||||||| ||| ||| |||||||| || |||||||||||||||||| Sbjct: 1715 aaatgggaggtggtcttcctgcagttaggagaacatctgagcaaaaccaacag 1767 Score = 402 bits (203), Expect = e-108 Identities = 502/599 (83%), Gaps = 2/599 (0%) Strand = Plus / Plus Query: 2122 aggatagccaaccattggcttctggtacatcaatgcagcatggaacacatgttgctagtg 2181 |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 1976 aggatagcagaccattggcttctggtacatcaacgcagcatggatcacatgttgctagtg 2035 Query: 2182 tggcaatttcaccaattgaaatggtccagtccgtctttatgcttgttgaagatgaaatga 2241 ||||| ||||||||| ||||||| | |||| || ||| | ||||||||||| ||||||| Sbjct: 2036 tggcagtttcaccaagtgaaatgtttgagtctgtgtttgtacttgttgaagacgaaatga 2095 Query: 2242 tgggtgatcctgcataccttattgctgtcatcatggagtttttacgaagcctgtcaaaag 2301 ||| ||||||||| || |||||| || |||||||||||||| ||||||| | |||| || Sbjct: 2096 tggctgatcctgcgtatcttatttctatcatcatggagtttctacgaagtgtctcaagag 2155 Query: 2302 ctgggctgaaggctcctcccgaccttcatgtcatgatgactgctttgttggcctgcagca 2361 ||||| ||||||||||||| ||||| ||| |||||||| | || ||||| |||||| Sbjct: 2156 ctgggttgaaggctcctcctaacctttttgtgatgatgacaacactgctggcccgcagca 2215 Query: 2362 accgttatgctgaaatagcactgtttgtatcgaacaagatcctagagccgtccagggaac 2421 |||||||| |||||||||| |||||||||| |||||||||||||| || |||| ||||| Sbjct: 2216 accgttatcctgaaatagccttgtttgtatccaacaagatcctagaaccctccaaggaac 2275 Query: 2422 tcgcagttcagctcattgaactgggtcggcagca-tctgctgacaaggaagctgggcgtc 2480 | || | || ||||| ||| | |||| || || ||| | |||||||||||||||||| Sbjct: 2276 ttgcgatgcaactcatggaattaggtcaacaacactct-ccgacaaggaagctgggcgtg 2334 Query: 2481 gacatgcttcgggagaggtgcctgcaccatgactacgtggccgcattactccaagacggg 2540 |||||||| | ||| || || |||||||||||||||| | || ||||| |||||||| Sbjct: 2335 gacatgctgagagagcggggcttgcaccatgactacgtcactgcgttactgcaagacgga 2394 Query: 2541 tactacctggaggctctacgctatgctcgaaaatacaaggttatcaccgtgcagccttcc 2600 ||| ||||||||||||| ||||| ||| ||||||||||||| || || ||||||||| | Sbjct: 2395 taccacctggaggctcttcgctacgctagaaaatacaaggtaataactgtgcagcctgtc 2454 Query: 2601 ctgttcttggaggaagccgtggccaagagcagcgcgccaaaccttgccgccgtgctaagc 2660 |||||||||||| |||| ||||||| | |||||||| ||||| |||||| |||| ||| Sbjct: 2455 ctgttcttggagaaagctgtggccataaacagcgcgcagaacctcgccgccatgctgagc 2514 Query: 2661 ttctttgctgagttcacaccgagcttcaagacgacatcggactacagcagatatcggca 2719 ||||| | |||||||| |||| |||||||||||| ||||||||| ||||||| ||||| Sbjct: 2515 ttcttctccgagttcacgccgaccttcaagacgacgtcggactacggcagataccggca 2573 Score = 208 bits (105), Expect = 8e-50 Identities = 138/149 (92%) Strand = Plus / Plus Query: 256 cctctgcgttggcccggatcctcgccacctgcgcgtcccaggcaaaagattatgggagat 315 |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 227 cctccgcgctggcccggatcctcgccgcctgcgcgtcccaggcaaaagattatgggaggt 286 Query: 316 gcatagcagcaaaggtccctgagattgaacataatatgtgttctaaggagtttctagcac 375 ||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct: 287 gcatagcagaaaaggtccctgagattgaacaaaatatgtgtgctaaggagtttctagcac 346 Query: 376 tcagacaatgcatgcaaactgcggtcaag 404 ||||| ||||||||| |||| ||||||| Sbjct: 347 tcagatcatgcatgcagactgtggtcaag 375 Score = 91.7 bits (46), Expect = 1e-14 Identities = 76/86 (88%) Strand = Plus / Plus Query: 1944 cagtcaaattcaggagttgagcatggaactgctaacctggcagcacatgtagataggtca 2003 ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| || Sbjct: 1828 cagtcaaattcagaagttgagcatggaattgctaacctggcagaacatgtagataggaca 1887 Query: 2004 tctttgaacacatcctctgattctga 2029 || || ||||| ||||||||||| Sbjct: 1888 ctgttaaatacatcatctgattctga 1913
>dbj|AK072620.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125B16, full insert sequence Length = 3111 Score = 997 bits (503), Expect = 0.0 Identities = 1114/1315 (84%), Gaps = 2/1315 (0%) Strand = Plus / Plus Query: 517 gcaatcagatgcaaggaggtttgaccagccctggtgcgctctctcatgcttatgtacaac 576 ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct: 456 gcaatcagatgcaaggaggtttgggtagccctggtgctctgtctcatgcttatgtacaac 515 Query: 577 atcctccactacggtgtgacatt-ccagatattaaggggctattctatgatgatgcgaat 635 ||||||| ||||| ||||||||| ||||| || ||||| || ||||||||||| ||| Sbjct: 516 atcctcctctacgatgtgacattaccagacatacgtgggctgttttatgatgatgctaat 575 Query: 636 aagtttcttgtagccccaacagctgaccggatattatactggaaga-tagcttcatctac 694 ||||| ||| | || ||||| || || |||||||||||||||||| ||| | ||||||| Sbjct: 576 aagttccttatcgctccaactgcggatgggatattatactggaagaatagttccatctac 635 Query: 695 tcaatctgggcctccaaactctgatccaattaatgaaggccccatcttatcagttcgatt 754 || | |||| ||||| ||||||||||| | ||||| || || | ||||||||||||| Sbjct: 636 tccagctggacctccgaactctgatcctgtaaatgatggacctgttttatcagttcgata 695 Query: 755 ttctctggatcagaaagccatagggattcagcgatccagtcatgaagtcgagtttagaaa 814 ||| ||||||| ||||||||||||||| || ||||||| |||||| || || |||| ||| Sbjct: 696 ttccctggatctgaaagccatagggatacaacgatccaatcatgaggttgaatttataaa 755 Query: 815 tagagaaacaggggaaggctgtagtaagaagtgcagagcagattctgaaaccatactggg 874 ||| |||||||| || ||||| ||| ||||||||||| ||||||||||| ||||| || Sbjct: 756 tagggaaacaggacaaacctgtaataaaaagtgcagagctgattctgaaactatacttgg 815 Query: 875 atttttctggactgactgtcccacttgtgatgtcataattataaaaacaagtgggctaga 934 ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| || || Sbjct: 816 ctttttttggacagactgccccacttgtgatgtcataataataaaaacaagtggcctgga 875 Query: 935 tctgcttgtctatgagccccaatcaaatgctcttcggttggtggagtcaaaaaagtgcaa 994 |||| ||| ||||| || |||||||||||||||| ||||| || ||||| ||| ||| Sbjct: 876 tctgtttgcttatgaacctcaatcaaatgctcttcacttggtagactcaaagaagatcaa 935 Query: 995 tgccacctggtatctttacactcatgaaagcaggttacttcttcttgcatctggaatgca 1054 || | ||||||| |||||||||||||||| ||||| |||||||||| || |||||||| Sbjct: 936 tgtgagctggtatttttacactcatgaaagtaggttgattcttcttgcttcaggaatgca 995 Query: 1055 atgtacgctgttcactggatatcagttttctgctggtgggatcgtcaaattacctaagtt 1114 ||| || || || ||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 996 atgcacactatttactggatatcagttttctgctggtgggattgtcaaattgcctaagtt 1055 Query: 1115 tgagatggtgatgtctaaatccgaagcaaataacaagcctgtcctagctgctgccgatgt 1174 ||||||| ||| ||||| |||||||| ||||| ||||| |||||||||| ||||| Sbjct: 1056 tgagatgacaatgactaaaagtgaagcaaacaacaaacctgttctagctgctgatgatgt 1115 Query: 1175 tcacattgtaacagtgtatggtaggatttactgcttgcagctggatagagttggcatggc 1234 ||| | |||||||| |||||||||||||| ||||||||||| || |||||| | ||| | Sbjct: 1116 tcataccgtaacagtctatggtaggatttattgcttgcagcttgacagagttagtatgac 1175 Query: 1235 attgaacctgtaccgattttaccgcgatgctgttgtacaacagggtactctcccagtata 1294 ||||||| |||| || || ||||| |||||||||||||||||||||||||| ||| || Sbjct: 1176 attgaacttgtatcgtttctaccgtgatgctgttgtacaacagggtactctgccaactta 1235 Query: 1295 ttcaagcagagttgcggttagtgcagttgacaatataatcatggtccatcaaattgatgc 1354 |||||| ||| |||| |||||||| |||||||| ||||||||||| || ||||| ||||| Sbjct: 1236 ttcaagtagaattgcagttagtgcggttgacaacataatcatggttcaccaaatagatgc 1295 Query: 1355 aaaagttgtcatactttatgatgtatttatggattcttacgcaccaatatctgcaccact 1414 ||| ||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||||| Sbjct: 1296 aaaggttgtcatactatatgatgtttttatggactcttatgcaccaatttctgcaccact 1355 Query: 1415 tccactgcttgtgagaggactgcccagcaatagtaagcaagcagcacagtctgcagatca 1474 || ||||||||||| || ||||| ||||||| ||||||| |||| || || ||||| Sbjct: 1356 cccgctgcttgtgagggggctgcctagcaataataagcaatcagctcaacctccagatag 1415 Query: 1475 gcaatcaagtgcatatggcgggactttatatggagaaggttggaactttctcattcctga 1534 ||||| ||||||||||| |||||| | |||||||||||||||| ||||||||||||||| Sbjct: 1416 ccaatctagtgcatatggtgggactctctatggagaaggttggagctttctcattcctga 1475 Query: 1535 cctcatctgtgatgctgagaatggactactctggaaacttcatttagatctggaggctat 1594 |||| ||||||||| |||||| || || | ||||||||||||||||| || |||||||| Sbjct: 1476 cctcgtctgtgatgttgagaacgggctcttatggaaacttcatttagacctagaggctat 1535 Query: 1595 tgctgctagcacttctgatgctccttcaattttggaattccttcagagacgaaagtctga 1654 ||| ||||| || ||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct: 1536 tgccgctagtacatctgatgctcctttgattctggaattccttcagagacgaaagtctga 1595 Query: 1655 cctgagtatggttaagacactaagcctcgctatagttcgaacaaccatcttggaaaggag 1714 || || ||||||||||| |||||||| |||||||| || || | |||| |||| ||||| Sbjct: 1596 ccctagcatggttaagactctaagccttgctatagtccggactatcatcctggagaggag 1655 Query: 1715 accaataactttggttgcaaaggcaatggatatcattcttgattcatactcccgtttgat 1774 |||||| ||| |||||||||||||||||||| | |||||||||| || || ||| |||| Sbjct: 1656 accaattactatggttgcaaaggcaatggatgttgttcttgattcctattctcgtctgat 1715 Query: 1775 gaaaatgggaggcggtgccgctggggttaggaggacgtctgagcaaaaccaacag 1829 |||||||||||| ||| ||| |||||||| || |||||||||||||||||| Sbjct: 1716 gaaaatgggaggtggtcttcctgcagttaggagaacatctgagcaaaaccaacag 1770 Score = 402 bits (203), Expect = e-108 Identities = 502/599 (83%), Gaps = 2/599 (0%) Strand = Plus / Plus Query: 2122 aggatagccaaccattggcttctggtacatcaatgcagcatggaacacatgttgctagtg 2181 |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 1979 aggatagcagaccattggcttctggtacatcaacgcagcatggatcacatgttgctagtg 2038 Query: 2182 tggcaatttcaccaattgaaatggtccagtccgtctttatgcttgttgaagatgaaatga 2241 ||||| ||||||||| ||||||| | |||| || ||| | ||||||||||| ||||||| Sbjct: 2039 tggcagtttcaccaagtgaaatgtttgagtctgtgtttgtacttgttgaagacgaaatga 2098 Query: 2242 tgggtgatcctgcataccttattgctgtcatcatggagtttttacgaagcctgtcaaaag 2301 ||| ||||||||| || |||||| || |||||||||||||| ||||||| | |||| || Sbjct: 2099 tggctgatcctgcgtatcttatttctatcatcatggagtttctacgaagtgtctcaagag 2158 Query: 2302 ctgggctgaaggctcctcccgaccttcatgtcatgatgactgctttgttggcctgcagca 2361 ||||| ||||||||||||| ||||| ||| |||||||| | || ||||| |||||| Sbjct: 2159 ctgggttgaaggctcctcctaacctttttgtgatgatgacaacactgctggcccgcagca 2218 Query: 2362 accgttatgctgaaatagcactgtttgtatcgaacaagatcctagagccgtccagggaac 2421 |||||||| |||||||||| |||||||||| |||||||||||||| || |||| ||||| Sbjct: 2219 accgttatcctgaaatagccttgtttgtatccaacaagatcctagaaccctccaaggaac 2278 Query: 2422 tcgcagttcagctcattgaactgggtcggcagca-tctgctgacaaggaagctgggcgtc 2480 | || | || ||||| ||| | |||| || || ||| | |||||||||||||||||| Sbjct: 2279 ttgcgatgcaactcatggaattaggtcaacaacactct-ccgacaaggaagctgggcgtg 2337 Query: 2481 gacatgcttcgggagaggtgcctgcaccatgactacgtggccgcattactccaagacggg 2540 |||||||| | ||| || || |||||||||||||||| | || ||||| |||||||| Sbjct: 2338 gacatgctgagagagcggggcttgcaccatgactacgtcactgcgttactgcaagacgga 2397 Query: 2541 tactacctggaggctctacgctatgctcgaaaatacaaggttatcaccgtgcagccttcc 2600 ||| ||||||||||||| ||||| ||| ||||||||||||| || || ||||||||| | Sbjct: 2398 taccacctggaggctcttcgctacgctagaaaatacaaggtaataactgtgcagcctgtc 2457 Query: 2601 ctgttcttggaggaagccgtggccaagagcagcgcgccaaaccttgccgccgtgctaagc 2660 |||||||||||| |||| ||||||| | |||||||| ||||| |||||| |||| ||| Sbjct: 2458 ctgttcttggagaaagctgtggccataaacagcgcgcagaacctcgccgccatgctgagc 2517 Query: 2661 ttctttgctgagttcacaccgagcttcaagacgacatcggactacagcagatatcggca 2719 ||||| | |||||||| |||| |||||||||||| ||||||||| ||||||| ||||| Sbjct: 2518 ttcttctccgagttcacgccgaccttcaagacgacgtcggactacggcagataccggca 2576 Score = 208 bits (105), Expect = 8e-50 Identities = 138/149 (92%) Strand = Plus / Plus Query: 256 cctctgcgttggcccggatcctcgccacctgcgcgtcccaggcaaaagattatgggagat 315 |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 228 cctccgcgctggcccggatcctcgccgcctgcgcgtcccaggcaaaagattatgggaggt 287 Query: 316 gcatagcagcaaaggtccctgagattgaacataatatgtgttctaaggagtttctagcac 375 ||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct: 288 gcatagcagaaaaggtccctgagattgaacaaaatatgtgtgctaaggagtttctagcac 347 Query: 376 tcagacaatgcatgcaaactgcggtcaag 404 ||||| ||||||||| |||| ||||||| Sbjct: 348 tcagatcatgcatgcagactgtggtcaag 376 Score = 91.7 bits (46), Expect = 1e-14 Identities = 76/86 (88%) Strand = Plus / Plus Query: 1944 cagtcaaattcaggagttgagcatggaactgctaacctggcagcacatgtagataggtca 2003 ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| || Sbjct: 1831 cagtcaaattcagaagttgagcatggaattgctaacctggcagaacatgtagataggaca 1890 Query: 2004 tctttgaacacatcctctgattctga 2029 || || ||||| ||||||||||| Sbjct: 1891 ctgttaaatacatcatctgattctga 1916
>dbj|AK062191.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E11, full insert sequence Length = 1531 Score = 394 bits (199), Expect = e-106 Identities = 501/599 (83%), Gaps = 2/599 (0%) Strand = Plus / Plus Query: 2122 aggatagccaaccattggcttctggtacatcaatgcagcatggaacacatgttgctagtg 2181 |||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct: 653 aggatagcagaccattggcttctggtacatcaacgcagcatgggtcacatgttgctagtg 712 Query: 2182 tggcaatttcaccaattgaaatggtccagtccgtctttatgcttgttgaagatgaaatga 2241 ||||| ||||||||| ||||||| | |||| || ||| | ||||||||||| ||||||| Sbjct: 713 tggcagtttcaccaagtgaaatgtttgagtctgtgtttgtacttgttgaagacgaaatga 772 Query: 2242 tgggtgatcctgcataccttattgctgtcatcatggagtttttacgaagcctgtcaaaag 2301 ||| ||||||||| || |||||| || |||||||||||||| ||||||| | |||| || Sbjct: 773 tggctgatcctgcgtatcttatttctatcatcatggagtttctacgaagtgtctcaagag 832 Query: 2302 ctgggctgaaggctcctcccgaccttcatgtcatgatgactgctttgttggcctgcagca 2361 ||||| ||||||||||||| ||||| ||| |||||||| | || ||||| |||||| Sbjct: 833 ctgggttgaaggctcctcctaacctttttgtgatgatgacaacactgctggcccgcagca 892 Query: 2362 accgttatgctgaaatagcactgtttgtatcgaacaagatcctagagccgtccagggaac 2421 |||||||| |||||||||| |||||||||| |||||||||||||| || |||| ||||| Sbjct: 893 accgttatcctgaaatagccttgtttgtatccaacaagatcctagaaccctccaaggaac 952 Query: 2422 tcgcagttcagctcattgaactgggtcggcagca-tctgctgacaaggaagctgggcgtc 2480 | || | || ||||| ||| | |||| || || ||| | |||||||||||||||||| Sbjct: 953 ttgcgatgcaactcatggaattaggtcaacaacactct-ccgacaaggaagctgggcgtg 1011 Query: 2481 gacatgcttcgggagaggtgcctgcaccatgactacgtggccgcattactccaagacggg 2540 |||||||| | ||| || || |||||||||||||||| | || ||||| |||||||| Sbjct: 1012 gacatgctgagagagcggggcttgcaccatgactacgtcactgcgttactgcaagacgga 1071 Query: 2541 tactacctggaggctctacgctatgctcgaaaatacaaggttatcaccgtgcagccttcc 2600 ||| ||||||||||||| ||||| ||| ||||||||||||| || || ||||||||| | Sbjct: 1072 taccacctggaggctcttcgctacgctagaaaatacaaggtaataactgtgcagcctgtc 1131 Query: 2601 ctgttcttggaggaagccgtggccaagagcagcgcgccaaaccttgccgccgtgctaagc 2660 |||||||||||| |||| ||||||| | |||||||| ||||| |||||| |||| ||| Sbjct: 1132 ctgttcttggagaaagctgtggccataaacagcgcgcagaacctcgccgccatgctgagc 1191 Query: 2661 ttctttgctgagttcacaccgagcttcaagacgacatcggactacagcagatatcggca 2719 ||||| | |||||||| |||| |||||||||||| ||||||||| ||||||| ||||| Sbjct: 1192 ttcttctccgagttcacgccgaccttcaagacgacgtcggactacggcagataccggca 1250 Score = 359 bits (181), Expect = 4e-95 Identities = 376/441 (85%) Strand = Plus / Plus Query: 1389 tcttacgcaccaatatctgcaccacttccactgcttgtgagaggactgcccagcaatagt 1448 ||||| |||||||| ||||||||||| || ||||||||||| || ||||| ||||||| | Sbjct: 4 tcttatgcaccaatttctgcaccactcccgctgcttgtgagggggctgcctagcaataat 63 Query: 1449 aagcaagcagcacagtctgcagatcagcaatcaagtgcatatggcgggactttatatgga 1508 |||||| |||| || || ||||| ||||| ||||||||||| |||||| | |||||| Sbjct: 64 aagcaatcagctcaacctccagatagccaatctagtgcatatggtgggactctctatgga 123 Query: 1509 gaaggttggaactttctcattcctgacctcatctgtgatgctgagaatggactactctgg 1568 |||||||||| ||||||||||||||||||| ||||||||| |||||| || || | ||| Sbjct: 124 gaaggttggagctttctcattcctgacctcgtctgtgatgttgagaacgggctcttatgg 183 Query: 1569 aaacttcatttagatctggaggctattgctgctagcacttctgatgctccttcaattttg 1628 |||||||||||||| || ||||||||||| ||||| || ||||||||||||| ||| || Sbjct: 184 aaacttcatttagacctagaggctattgccgctagtacatctgatgctcctttgattctg 243 Query: 1629 gaattccttcagagacgaaagtctgacctgagtatggttaagacactaagcctcgctata 1688 |||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||| Sbjct: 244 gaattccttcagagacgaaagtctgaccctagcatggttaagactctaagccttgctata 303 Query: 1689 gttcgaacaaccatcttggaaaggagaccaataactttggttgcaaaggcaatggatatc 1748 || || || | |||| |||| ||||||||||| ||| |||||||||||||||||||| | Sbjct: 304 gtccggactatcatcctggagaggagaccaattactatggttgcaaaggcaatggatgtt 363 Query: 1749 attcttgattcatactcccgtttgatgaaaatgggaggcggtgccgctggggttaggagg 1808 |||||||||| || || ||| |||||||||||||||| ||| ||| |||||||| Sbjct: 364 gttcttgattcctattctcgtctgatgaaaatgggaggtggtcttcctgcagttaggaga 423 Query: 1809 acgtctgagcaaaaccaacag 1829 || |||||||||||||||||| Sbjct: 424 acatctgagcaaaaccaacag 444 Score = 91.7 bits (46), Expect = 1e-14 Identities = 76/86 (88%) Strand = Plus / Plus Query: 1944 cagtcaaattcaggagttgagcatggaactgctaacctggcagcacatgtagataggtca 2003 ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| || Sbjct: 505 cagtcaaattcagaagttgagcatggaattgctaacctggcagaacatgtagataggaca 564 Query: 2004 tctttgaacacatcctctgattctga 2029 || || ||||| ||||||||||| Sbjct: 565 ctgttaaatacatcatctgattctga 590
>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050N08, complete sequence Length = 144593 Score = 262 bits (132), Expect = 6e-66 Identities = 264/308 (85%) Strand = Plus / Plus Query: 1275 cagggtactctcccagtatattcaagcagagttgcggttagtgcagttgacaatataatc 1334 ||||||||||| ||| |||||||| ||| |||| |||||||| |||||||| |||||| Sbjct: 132344 cagggtactctgccaacttattcaagtagaattgcagttagtgcggttgacaacataatc 132403 Query: 1335 atggtccatcaaattgatgcaaaagttgtcatactttatgatgtatttatggattcttac 1394 ||||| || ||||| |||||||| ||||||||||| |||||||| |||||||| ||||| Sbjct: 132404 atggttcaccaaatagatgcaaaggttgtcatactatatgatgtttttatggactcttat 132463 Query: 1395 gcaccaatatctgcaccacttccactgcttgtgagaggactgcccagcaatagtaagcaa 1454 |||||||| ||||||||||| || ||||||||||| || ||||| ||||||| ||||||| Sbjct: 132464 gcaccaatttctgcaccactcccgctgcttgtgagggggctgcctagcaataataagcaa 132523 Query: 1455 gcagcacagtctgcagatcagcaatcaagtgcatatggcgggactttatatggagaaggt 1514 |||| || || ||||| ||||| ||||||||||| |||||| | |||||||||||| Sbjct: 132524 tcagctcaacctccagatagccaatctagtgcatatggtgggactctctatggagaaggt 132583 Query: 1515 tggaactttctcattcctgacctcatctgtgatgctgagaatggactactctggaaactt 1574 |||| ||||||||||||||||||| ||||||||| |||||| || || | ||||||||| Sbjct: 132584 tggagctttctcattcctgacctcgtctgtgatgttgagaacgggctcttatggaaactt 132643 Query: 1575 catttaga 1582 |||||||| Sbjct: 132644 catttaga 132651 Score = 208 bits (105), Expect = 8e-50 Identities = 222/261 (85%) Strand = Plus / Plus Query: 665 gatattatactggaagatagcttcatctactcaatctgggcctccaaactctgatccaat 724 |||||||||||||||||||| | ||||||||| | |||| ||||| ||||||||||| | Sbjct: 130023 gatattatactggaagatagttccatctactccagctggacctccgaactctgatcctgt 130082 Query: 725 taatgaaggccccatcttatcagttcgattttctctggatcagaaagccatagggattca 784 ||||| || || | ||||||||||||| ||| ||||||| ||||||||||||||| || Sbjct: 130083 aaatgatggacctgttttatcagttcgatattccctggatctgaaagccatagggataca 130142 Query: 785 gcgatccagtcatgaagtcgagtttagaaatagagaaacaggggaaggctgtagtaagaa 844 ||||||| |||||| || || |||| |||||| |||||||| || ||||| ||| || Sbjct: 130143 acgatccaatcatgaggttgaatttataaatagggaaacaggacaaacctgtaataaaaa 130202 Query: 845 gtgcagagcagattctgaaaccatactgggatttttctggactgactgtcccacttgtga 904 ||||||||| ||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| Sbjct: 130203 gtgcagagctgattctgaaactatacttggctttttttggacagactgccccacttgtga 130262 Query: 905 tgtcataattataaaaacaag 925 ||||||||| ||||||||||| Sbjct: 130263 tgtcataataataaaaacaag 130283 Score = 176 bits (89), Expect = 3e-40 Identities = 149/169 (88%) Strand = Plus / Plus Query: 2122 aggatagccaaccattggcttctggtacatcaatgcagcatggaacacatgttgctagtg 2181 |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 133307 aggatagcagaccattggcttctggtacatcaacgcagcatggatcacatgttgctagtg 133366 Query: 2182 tggcaatttcaccaattgaaatggtccagtccgtctttatgcttgttgaagatgaaatga 2241 ||||| ||||||||| ||||||| | |||| || ||| | ||||||||||| ||||||| Sbjct: 133367 tggcagtttcaccaagtgaaatgtttgagtctgtgtttgtacttgttgaagacgaaatga 133426 Query: 2242 tgggtgatcctgcataccttattgctgtcatcatggagtttttacgaag 2290 ||| ||||||||| || |||||| || |||||||||||||| ||||||| Sbjct: 133427 tggctgatcctgcgtatcttatttctatcatcatggagtttctacgaag 133475 Score = 149 bits (75), Expect = 7e-32 Identities = 96/103 (93%) Strand = Plus / Plus Query: 294 caggcaaaagattatgggagatgcatagcagcaaaggtccctgagattgaacataatatg 353 |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| Sbjct: 127986 caggcaaaagattatgggaggtgcatagcagaaaaggtccctgagattgaacaaaatatg 128045 Query: 354 tgttctaaggagtttctagcactcagacaatgcatgcaaactg 396 ||| ||||||||||||||||||||||| ||||||||| |||| Sbjct: 128046 tgtgctaaggagtttctagcactcagatcatgcatgcagactg 128088 Score = 123 bits (62), Expect = 4e-24 Identities = 140/166 (84%) Strand = Plus / Plus Query: 1664 ggttaagacactaagcctcgctatagttcgaacaaccatcttggaaaggagaccaataac 1723 ||||||||| |||||||| |||||||| || || | |||| |||| ||||||||||| || Sbjct: 132933 ggttaagactctaagccttgctatagtccggactatcatcctggagaggagaccaattac 132992 Query: 1724 tttggttgcaaaggcaatggatatcattcttgattcatactcccgtttgatgaaaatggg 1783 | |||||||||||||||||||| | |||||||||| || || ||| ||||||||||||| Sbjct: 132993 tatggttgcaaaggcaatggatgttgttcttgattcctattctcgtctgatgaaaatggg 133052 Query: 1784 aggcggtgccgctggggttaggaggacgtctgagcaaaaccaacag 1829 ||| ||| ||| |||||||| || |||||||||||||||||| Sbjct: 133053 aggtggtcttcctgcagttaggagaacatctgagcaaaaccaacag 133098 Score = 121 bits (61), Expect = 1e-23 Identities = 124/145 (85%) Strand = Plus / Plus Query: 517 gcaatcagatgcaaggaggtttgaccagccctggtgcgctctctcatgcttatgtacaac 576 ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct: 129794 gcaatcagatgcaaggaggtttgggtagccctggtgctctgtctcatgcttatgtacaac 129853 Query: 577 atcctccactacggtgtgacattccagatattaaggggctattctatgatgatgcgaata 636 ||||||| ||||| |||||||| ||||| || ||||| || ||||||||||| |||| Sbjct: 129854 atcctcctctacgatgtgacataccagacatacgtgggctgttttatgatgatgctaata 129913 Query: 637 agtttcttgtagccccaacagctga 661 |||| ||| | || ||||| ||||| Sbjct: 129914 agttccttatcgctccaactgctga 129938 Score = 103 bits (52), Expect = 4e-18 Identities = 103/120 (85%) Strand = Plus / Plus Query: 2462 gacaaggaagctgggcgtcgacatgcttcgggagaggtgcctgcaccatgactacgtggc 2521 |||||||||||||||||| |||||||| | ||| || || |||||||||||||||| | Sbjct: 134691 gacaaggaagctgggcgtggacatgctgagagagcggggcttgcaccatgactacgtcac 134750 Query: 2522 cgcattactccaagacgggtactacctggaggctctacgctatgctcgaaaatacaaggt 2581 || ||||| |||||||| ||| ||||||||||||| ||||| ||| ||||||||||||| Sbjct: 134751 tgcgttactgcaagacggataccacctggaggctcttcgctacgctagaaaatacaaggt 134810 Score = 101 bits (51), Expect = 1e-17 Identities = 111/131 (84%) Strand = Plus / Plus Query: 2589 gtgcagccttccctgttcttggaggaagccgtggccaagagcagcgcgccaaaccttgcc 2648 ||||||||| ||||||||||||| |||| ||||||| | |||||||| ||||| ||| Sbjct: 135168 gtgcagcctgtcctgttcttggagaaagctgtggccataaacagcgcgcagaacctcgcc 135227 Query: 2649 gccgtgctaagcttctttgctgagttcacaccgagcttcaagacgacatcggactacagc 2708 ||| |||| |||||||| | |||||||| |||| |||||||||||| ||||||||| || Sbjct: 135228 gccatgctgagcttcttctccgagttcacgccgaccttcaagacgacgtcggactacggc 135287 Query: 2709 agatatcggca 2719 ||||| ||||| Sbjct: 135288 agataccggca 135298 Score = 99.6 bits (50), Expect = 5e-17 Identities = 101/118 (85%) Strand = Plus / Plus Query: 1076 tcagttttctgctggtgggatcgtcaaattacctaagtttgagatggtgatgtctaaatc 1135 ||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||||| Sbjct: 131459 tcagttttctgctggtgggattgtcaaattgcctaagtttgagatgacaatgactaaaag 131518 Query: 1136 cgaagcaaataacaagcctgtcctagctgctgccgatgttcacattgtaacagtgtat 1193 |||||||| ||||| ||||| |||||||||| |||||||| | |||||||||||| Sbjct: 131519 tgaagcaaacaacaaacctgttctagctgctgatgatgttcataccgtaacagtgtat 131576 Score = 95.6 bits (48), Expect = 9e-16 Identities = 129/156 (82%) Strand = Plus / Plus Query: 924 agtgggctagatctgcttgtctatgagccccaatcaaatgctcttcggttggtggagtca 983 ||||| || |||||| ||| ||||| || |||||||||||||||| ||||| || ||| Sbjct: 130727 agtggcctggatctgtttgcttatgaacctcaatcaaatgctcttcacttggtagactca 130786 Query: 984 aaaaagtgcaatgccacctggtatctttacactcatgaaagcaggttacttcttcttgca 1043 || ||| ||||| | ||||||| |||||||||||||||| ||||| |||||||||| Sbjct: 130787 aagaagatcaatgtgagctggtatttttacactcatgaaagtaggttgattcttcttgct 130846 Query: 1044 tctggaatgcaatgtacgctgttcactggatatcag 1079 || ||||||||||| || || || |||||||||||| Sbjct: 130847 tcaggaatgcaatgcacactatttactggatatcag 130882 Score = 91.7 bits (46), Expect = 1e-14 Identities = 76/86 (88%) Strand = Plus / Plus Query: 1944 cagtcaaattcaggagttgagcatggaactgctaacctggcagcacatgtagataggtca 2003 ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| || Sbjct: 133159 cagtcaaattcagaagttgagcatggaattgctaacctggcagaacatgtagataggaca 133218 Query: 2004 tctttgaacacatcctctgattctga 2029 || || ||||| ||||||||||| Sbjct: 133219 ctgttaaatacatcatctgattctga 133244 Score = 89.7 bits (45), Expect = 5e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 1588 aggctattgctgctagcacttctgatgctccttcaattttggaattccttcagagacgaa 1647 |||||||||| ||||| || ||||||||||||| ||| ||||||||||||||||||||| Sbjct: 132736 aggctattgccgctagtacatctgatgctcctttgattctggaattccttcagagacgaa 132795 Query: 1648 agtctgacc 1656 ||||||||| Sbjct: 132796 agtctgacc 132804 Score = 87.7 bits (44), Expect = 2e-13 Identities = 77/88 (87%) Strand = Plus / Plus Query: 1191 tatggtaggatttactgcttgcagctggatagagttggcatggcattgaacctgtaccga 1250 |||||||||||||| ||||||||||| || |||||| | ||| |||||||| |||| || Sbjct: 131653 tatggtaggatttattgcttgcagcttgacagagttagtatgacattgaacttgtatcgt 131712 Query: 1251 ttttaccgcgatgctgttgtacaacagg 1278 || ||||| ||||||||||||||||||| Sbjct: 131713 ttctaccgtgatgctgttgtacaacagg 131740 Score = 73.8 bits (37), Expect = 3e-09 Identities = 88/105 (83%) Strand = Plus / Plus Query: 2295 tcaaaagctgggctgaaggctcctcccgaccttcatgtcatgatgactgctttgttggcc 2354 |||| ||||||| ||||||||||||| ||||| ||| |||||||| | || ||||| Sbjct: 133856 tcaagagctgggttgaaggctcctcctaacctttttgtgatgatgacaacactgctggcc 133915 Query: 2355 tgcagcaaccgttatgctgaaatagcactgtttgtatcgaacaag 2399 |||||||||||||| |||||||||| |||||||||| |||||| Sbjct: 133916 cgcagcaaccgttatcctgaaatagccttgtttgtatccaacaag 133960 Score = 60.0 bits (30), Expect = 5e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 256 cctctgcgttggcccggatcctcgccacctgcgcgtcccagg 297 |||| ||| ||||||||||||||||| ||||||||||||||| Sbjct: 127280 cctccgcgctggcccggatcctcgccgcctgcgcgtcccagg 127321
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 262 bits (132), Expect = 6e-66 Identities = 264/308 (85%) Strand = Plus / Plus Query: 1275 cagggtactctcccagtatattcaagcagagttgcggttagtgcagttgacaatataatc 1334 ||||||||||| ||| |||||||| ||| |||| |||||||| |||||||| |||||| Sbjct: 13033428 cagggtactctgccaacttattcaagtagaattgcagttagtgcggttgacaacataatc 13033487 Query: 1335 atggtccatcaaattgatgcaaaagttgtcatactttatgatgtatttatggattcttac 1394 ||||| || ||||| |||||||| ||||||||||| |||||||| |||||||| ||||| Sbjct: 13033488 atggttcaccaaatagatgcaaaggttgtcatactatatgatgtttttatggactcttat 13033547 Query: 1395 gcaccaatatctgcaccacttccactgcttgtgagaggactgcccagcaatagtaagcaa 1454 |||||||| ||||||||||| || ||||||||||| || ||||| ||||||| ||||||| Sbjct: 13033548 gcaccaatttctgcaccactcccgctgcttgtgagggggctgcctagcaataataagcaa 13033607 Query: 1455 gcagcacagtctgcagatcagcaatcaagtgcatatggcgggactttatatggagaaggt 1514 |||| || || ||||| ||||| ||||||||||| |||||| | |||||||||||| Sbjct: 13033608 tcagctcaacctccagatagccaatctagtgcatatggtgggactctctatggagaaggt 13033667 Query: 1515 tggaactttctcattcctgacctcatctgtgatgctgagaatggactactctggaaactt 1574 |||| ||||||||||||||||||| ||||||||| |||||| || || | ||||||||| Sbjct: 13033668 tggagctttctcattcctgacctcgtctgtgatgttgagaacgggctcttatggaaactt 13033727 Query: 1575 catttaga 1582 |||||||| Sbjct: 13033728 catttaga 13033735 Score = 208 bits (105), Expect = 8e-50 Identities = 222/261 (85%) Strand = Plus / Plus Query: 665 gatattatactggaagatagcttcatctactcaatctgggcctccaaactctgatccaat 724 |||||||||||||||||||| | ||||||||| | |||| ||||| ||||||||||| | Sbjct: 13031107 gatattatactggaagatagttccatctactccagctggacctccgaactctgatcctgt 13031166 Query: 725 taatgaaggccccatcttatcagttcgattttctctggatcagaaagccatagggattca 784 ||||| || || | ||||||||||||| ||| ||||||| ||||||||||||||| || Sbjct: 13031167 aaatgatggacctgttttatcagttcgatattccctggatctgaaagccatagggataca 13031226 Query: 785 gcgatccagtcatgaagtcgagtttagaaatagagaaacaggggaaggctgtagtaagaa 844 ||||||| |||||| || || |||| |||||| |||||||| || ||||| ||| || Sbjct: 13031227 acgatccaatcatgaggttgaatttataaatagggaaacaggacaaacctgtaataaaaa 13031286 Query: 845 gtgcagagcagattctgaaaccatactgggatttttctggactgactgtcccacttgtga 904 ||||||||| ||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| Sbjct: 13031287 gtgcagagctgattctgaaactatacttggctttttttggacagactgccccacttgtga 13031346 Query: 905 tgtcataattataaaaacaag 925 ||||||||| ||||||||||| Sbjct: 13031347 tgtcataataataaaaacaag 13031367 Score = 176 bits (89), Expect = 3e-40 Identities = 149/169 (88%) Strand = Plus / Plus Query: 2122 aggatagccaaccattggcttctggtacatcaatgcagcatggaacacatgttgctagtg 2181 |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 13034391 aggatagcagaccattggcttctggtacatcaacgcagcatggatcacatgttgctagtg 13034450 Query: 2182 tggcaatttcaccaattgaaatggtccagtccgtctttatgcttgttgaagatgaaatga 2241 ||||| ||||||||| ||||||| | |||| || ||| | ||||||||||| ||||||| Sbjct: 13034451 tggcagtttcaccaagtgaaatgtttgagtctgtgtttgtacttgttgaagacgaaatga 13034510 Query: 2242 tgggtgatcctgcataccttattgctgtcatcatggagtttttacgaag 2290 ||| ||||||||| || |||||| || |||||||||||||| ||||||| Sbjct: 13034511 tggctgatcctgcgtatcttatttctatcatcatggagtttctacgaag 13034559 Score = 149 bits (75), Expect = 7e-32 Identities = 96/103 (93%) Strand = Plus / Plus Query: 294 caggcaaaagattatgggagatgcatagcagcaaaggtccctgagattgaacataatatg 353 |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| Sbjct: 13029070 caggcaaaagattatgggaggtgcatagcagaaaaggtccctgagattgaacaaaatatg 13029129 Query: 354 tgttctaaggagtttctagcactcagacaatgcatgcaaactg 396 ||| ||||||||||||||||||||||| ||||||||| |||| Sbjct: 13029130 tgtgctaaggagtttctagcactcagatcatgcatgcagactg 13029172 Score = 123 bits (62), Expect = 4e-24 Identities = 140/166 (84%) Strand = Plus / Plus Query: 1664 ggttaagacactaagcctcgctatagttcgaacaaccatcttggaaaggagaccaataac 1723 ||||||||| |||||||| |||||||| || || | |||| |||| ||||||||||| || Sbjct: 13034017 ggttaagactctaagccttgctatagtccggactatcatcctggagaggagaccaattac 13034076 Query: 1724 tttggttgcaaaggcaatggatatcattcttgattcatactcccgtttgatgaaaatggg 1783 | |||||||||||||||||||| | |||||||||| || || ||| ||||||||||||| Sbjct: 13034077 tatggttgcaaaggcaatggatgttgttcttgattcctattctcgtctgatgaaaatggg 13034136 Query: 1784 aggcggtgccgctggggttaggaggacgtctgagcaaaaccaacag 1829 ||| ||| ||| |||||||| || |||||||||||||||||| Sbjct: 13034137 aggtggtcttcctgcagttaggagaacatctgagcaaaaccaacag 13034182 Score = 121 bits (61), Expect = 1e-23 Identities = 124/145 (85%) Strand = Plus / Plus Query: 517 gcaatcagatgcaaggaggtttgaccagccctggtgcgctctctcatgcttatgtacaac 576 ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct: 13030878 gcaatcagatgcaaggaggtttgggtagccctggtgctctgtctcatgcttatgtacaac 13030937 Query: 577 atcctccactacggtgtgacattccagatattaaggggctattctatgatgatgcgaata 636 ||||||| ||||| |||||||| ||||| || ||||| || ||||||||||| |||| Sbjct: 13030938 atcctcctctacgatgtgacataccagacatacgtgggctgttttatgatgatgctaata 13030997 Query: 637 agtttcttgtagccccaacagctga 661 |||| ||| | || ||||| ||||| Sbjct: 13030998 agttccttatcgctccaactgctga 13031022 Score = 103 bits (52), Expect = 4e-18 Identities = 103/120 (85%) Strand = Plus / Plus Query: 2462 gacaaggaagctgggcgtcgacatgcttcgggagaggtgcctgcaccatgactacgtggc 2521 |||||||||||||||||| |||||||| | ||| || || |||||||||||||||| | Sbjct: 13035775 gacaaggaagctgggcgtggacatgctgagagagcggggcttgcaccatgactacgtcac 13035834 Query: 2522 cgcattactccaagacgggtactacctggaggctctacgctatgctcgaaaatacaaggt 2581 || ||||| |||||||| ||| ||||||||||||| ||||| ||| ||||||||||||| Sbjct: 13035835 tgcgttactgcaagacggataccacctggaggctcttcgctacgctagaaaatacaaggt 13035894 Score = 101 bits (51), Expect = 1e-17 Identities = 111/131 (84%) Strand = Plus / Plus Query: 2589 gtgcagccttccctgttcttggaggaagccgtggccaagagcagcgcgccaaaccttgcc 2648 ||||||||| ||||||||||||| |||| ||||||| | |||||||| ||||| ||| Sbjct: 13036252 gtgcagcctgtcctgttcttggagaaagctgtggccataaacagcgcgcagaacctcgcc 13036311 Query: 2649 gccgtgctaagcttctttgctgagttcacaccgagcttcaagacgacatcggactacagc 2708 ||| |||| |||||||| | |||||||| |||| |||||||||||| ||||||||| || Sbjct: 13036312 gccatgctgagcttcttctccgagttcacgccgaccttcaagacgacgtcggactacggc 13036371 Query: 2709 agatatcggca 2719 ||||| ||||| Sbjct: 13036372 agataccggca 13036382 Score = 99.6 bits (50), Expect = 5e-17 Identities = 101/118 (85%) Strand = Plus / Plus Query: 1076 tcagttttctgctggtgggatcgtcaaattacctaagtttgagatggtgatgtctaaatc 1135 ||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||||| Sbjct: 13032543 tcagttttctgctggtgggattgtcaaattgcctaagtttgagatgacaatgactaaaag 13032602 Query: 1136 cgaagcaaataacaagcctgtcctagctgctgccgatgttcacattgtaacagtgtat 1193 |||||||| ||||| ||||| |||||||||| |||||||| | |||||||||||| Sbjct: 13032603 tgaagcaaacaacaaacctgttctagctgctgatgatgttcataccgtaacagtgtat 13032660 Score = 95.6 bits (48), Expect = 9e-16 Identities = 129/156 (82%) Strand = Plus / Plus Query: 924 agtgggctagatctgcttgtctatgagccccaatcaaatgctcttcggttggtggagtca 983 ||||| || |||||| ||| ||||| || |||||||||||||||| ||||| || ||| Sbjct: 13031811 agtggcctggatctgtttgcttatgaacctcaatcaaatgctcttcacttggtagactca 13031870 Query: 984 aaaaagtgcaatgccacctggtatctttacactcatgaaagcaggttacttcttcttgca 1043 || ||| ||||| | ||||||| |||||||||||||||| ||||| |||||||||| Sbjct: 13031871 aagaagatcaatgtgagctggtatttttacactcatgaaagtaggttgattcttcttgct 13031930 Query: 1044 tctggaatgcaatgtacgctgttcactggatatcag 1079 || ||||||||||| || || || |||||||||||| Sbjct: 13031931 tcaggaatgcaatgcacactatttactggatatcag 13031966 Score = 91.7 bits (46), Expect = 1e-14 Identities = 76/86 (88%) Strand = Plus / Plus Query: 1944 cagtcaaattcaggagttgagcatggaactgctaacctggcagcacatgtagataggtca 2003 ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| || Sbjct: 13034243 cagtcaaattcagaagttgagcatggaattgctaacctggcagaacatgtagataggaca 13034302 Query: 2004 tctttgaacacatcctctgattctga 2029 || || ||||| ||||||||||| Sbjct: 13034303 ctgttaaatacatcatctgattctga 13034328 Score = 89.7 bits (45), Expect = 5e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 1588 aggctattgctgctagcacttctgatgctccttcaattttggaattccttcagagacgaa 1647 |||||||||| ||||| || ||||||||||||| ||| ||||||||||||||||||||| Sbjct: 13033820 aggctattgccgctagtacatctgatgctcctttgattctggaattccttcagagacgaa 13033879 Query: 1648 agtctgacc 1656 ||||||||| Sbjct: 13033880 agtctgacc 13033888 Score = 87.7 bits (44), Expect = 2e-13 Identities = 77/88 (87%) Strand = Plus / Plus Query: 1191 tatggtaggatttactgcttgcagctggatagagttggcatggcattgaacctgtaccga 1250 |||||||||||||| ||||||||||| || |||||| | ||| |||||||| |||| || Sbjct: 13032737 tatggtaggatttattgcttgcagcttgacagagttagtatgacattgaacttgtatcgt 13032796 Query: 1251 ttttaccgcgatgctgttgtacaacagg 1278 || ||||| ||||||||||||||||||| Sbjct: 13032797 ttctaccgtgatgctgttgtacaacagg 13032824 Score = 73.8 bits (37), Expect = 3e-09 Identities = 88/105 (83%) Strand = Plus / Plus Query: 2295 tcaaaagctgggctgaaggctcctcccgaccttcatgtcatgatgactgctttgttggcc 2354 |||| ||||||| ||||||||||||| ||||| ||| |||||||| | || ||||| Sbjct: 13034940 tcaagagctgggttgaaggctcctcctaacctttttgtgatgatgacaacactgctggcc 13034999 Query: 2355 tgcagcaaccgttatgctgaaatagcactgtttgtatcgaacaag 2399 |||||||||||||| |||||||||| |||||||||| |||||| Sbjct: 13035000 cgcagcaaccgttatcctgaaatagccttgtttgtatccaacaag 13035044 Score = 60.0 bits (30), Expect = 5e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 256 cctctgcgttggcccggatcctcgccacctgcgcgtcccagg 297 |||| ||| ||||||||||||||||| ||||||||||||||| Sbjct: 13028364 cctccgcgctggcccggatcctcgccgcctgcgcgtcccagg 13028405
>gb|AY108484.1| Zea mays PCO088023 mRNA sequence Length = 631 Score = 157 bits (79), Expect = 3e-34 Identities = 311/386 (80%), Gaps = 2/386 (0%) Strand = Plus / Minus Query: 2358 agcaaccgttatgctgaaatagcactgtttgtatcgaacaagatcctagagccgtccagg 2417 ||||||||||| |||||||||||| ||||||| || ||||| || || ||||||| | Sbjct: 567 agcaaccgttacgctgaaatagcattgtttgtgtcaaacaanattcttgagccgtgtaaa 508 Query: 2418 gaactcgcagttcagctcattgaactgggtcggcagcatctgctgacaaggaagctgggc 2477 ||||| ||| | || || || || ||||||| ||| || | || || |||||||||||| Sbjct: 507 gaactggcaatgcaacttatggagctgggtctgcatcacccgccaacgaggaagctgggc 448 Query: 2478 gtcgacatgcttcgggagaggtgcctgcaccatgactacgtggccgcattactccaagac 2537 | |||||||| ||||| | ||||||| || ||||||||| | || | || ||||| Sbjct: 447 atggacatgctgagggagcgaggcctgcatcacgactacgtgactgcgatgctgcaagat 388 Query: 2538 gggtactacctggaggctctacgctatgctcgaaaatacaaggttatcaccgtgcagcct 2597 ||||||||| ||||||| || |||||||| ||||||||||||| ||||||||||||||| Sbjct: 387 gggtactacttggaggccctgcgctatgccagaaaatacaaggtgatcaccgtgcagcct 328 Query: 2598 tccctgttcttggaggaagccgtggccaagagcagcgcgccaaaccttgccgccgtgcta 2657 |||| || ||||| ||||| |||| |||| |||||| | ||||| || || ||||| Sbjct: 327 gccctatttctggagaaagccctggcgaagaacagcgcccacaacctggctgcagtgctg 268 Query: 2658 agcttctt-tgctgagttcacaccgagcttcaagacgacatcggactacagcagatatcg 2716 |||||||| ||| |||||||| |||||||||||| | |||||||||| | |||||| || Sbjct: 267 agcttcttctgc-gagttcactccgagcttcaaggccacatcggacttcgtcagataccg 209 Query: 2717 gcacatactgtcagaaatggtctgaa 2742 ||| || ||||| |||||||| |||| Sbjct: 208 gcatatcctgtctgaaatggtttgaa 183
>ref|XM_965266.1| PREDICTED: Tribolium castaneum similar to CG2604-PA, isoform A (LOC658918), mRNA Length = 1341 Score = 46.1 bits (23), Expect = 0.71 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1497 actttatatggagaaggttggaa 1519 ||||||||||||||||||||||| Sbjct: 1051 actttatatggagaaggttggaa 1073
>ref|XM_965198.1| PREDICTED: Tribolium castaneum similar to CG2604-PA, isoform A (LOC658845), mRNA Length = 1314 Score = 46.1 bits (23), Expect = 0.71 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1497 actttatatggagaaggttggaa 1519 ||||||||||||||||||||||| Sbjct: 1024 actttatatggagaaggttggaa 1046
>gb|AC026347.17| Homo sapiens 3 BAC RP11-362A9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 195430 Score = 46.1 bits (23), Expect = 0.71 Identities = 23/23 (100%) Strand = Plus / Minus Query: 893 tcccacttgtgatgtcataatta 915 ||||||||||||||||||||||| Sbjct: 7404 tcccacttgtgatgtcataatta 7382
>ref|XM_001019073.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00251230) mRNA, complete cds Length = 20940 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1621 caattttggaattccttcagag 1642 |||||||||||||||||||||| Sbjct: 8118 caattttggaattccttcagag 8139
>emb|CT955964.5| Zebrafish DNA sequence from clone CH1073-265L12 in linkage group 20, complete sequence Length = 40186 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2833 gtttaaaatattattatgcttg 2854 |||||||||||||||||||||| Sbjct: 10126 gtttaaaatattattatgcttg 10105
>gb|AC136842.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085C16, complete sequence Length = 156069 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1536 ctcatctgtgatgctgagaatg 1557 |||||||||||||||||||||| Sbjct: 92047 ctcatctgtgatgctgagaatg 92068
>gb|AY028787.1| Schistosoma mansoni FTZ-F1 nuclear receptor-like protein (ftz-f1) gene, complete cds, alternatively spliced Length = 23749 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 aatccatctcccggacgggacc 34 |||||||||||||||||||||| Sbjct: 1472 aatccatctcccggacgggacc 1493
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1536 ctcatctgtgatgctgagaatg 1557 |||||||||||||||||||||| Sbjct: 22054051 ctcatctgtgatgctgagaatg 22054072
>emb|AL513015.6| Human DNA sequence from clone RP1-52M20 on chromosome 6p22.1-22.3 Contains part of a novel gene (FLJ20342), complete sequence Length = 113228 Score = 44.1 bits (22), Expect = 2.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1531 ctgacctcatctgtgatgctgagaat 1556 |||||||||||| ||||||||||||| Sbjct: 82510 ctgacctcatctttgatgctgagaat 82485
>ref|NM_001007324.1| Danio rerio connexin 28.9 (cx28.9), mRNA gb|BC085626.1| Danio rerio connexin 28.9, mRNA (cDNA clone MGC:92056 IMAGE:7046096), complete cds Length = 2497 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2833 gtttaaaatattattatgcttg 2854 |||||||||||||||||||||| Sbjct: 905 gtttaaaatattattatgcttg 926
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 269 ccggatcctcgccacctgcgcg 290 |||||||||||||||||||||| Sbjct: 183150 ccggatcctcgccacctgcgcg 183129
>emb|CR352322.5| Zebrafish DNA sequence from clone DKEY-261A18 in linkage group 20, complete sequence Length = 59134 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2833 gtttaaaatattattatgcttg 2854 |||||||||||||||||||||| Sbjct: 12630 gtttaaaatattattatgcttg 12651
>gb|AC010412.9| Homo sapiens chromosome 19 clone CTD-2166J9, complete sequence Length = 155085 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1940 gtcacagtcaaattcaggagtt 1961 |||||||||||||||||||||| Sbjct: 33195 gtcacagtcaaattcaggagtt 33174
>gb|AF158103.1|AF158103 Schistosoma mansoni FTZ-F1 (FTZ-F1) mRNA, complete cds Length = 2775 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 aatccatctcccggacgggacc 34 |||||||||||||||||||||| Sbjct: 53 aatccatctcccggacgggacc 74
>gb|AF191069.1|AF191069 Homo sapiens chromosome 21 clone P704-682K20 map 21q22.1, complete sequence Length = 108965 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 402 aagaataaagcttgaagtttta 423 |||||||||||||||||||||| Sbjct: 80112 aagaataaagcttgaagtttta 80091
>gb|AF096876.1|AF096876 Homo sapiens chromosome 21q22.1 PAC K09209, complete sequence Length = 109864 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 402 aagaataaagcttgaagtttta 423 |||||||||||||||||||||| Sbjct: 58237 aagaataaagcttgaagtttta 58216
>dbj|AP001707.1| Homo sapiens genomic DNA, chromosome 21q, section 51/105 Length = 340000 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 402 aagaataaagcttgaagtttta 423 |||||||||||||||||||||| Sbjct: 106705 aagaataaagcttgaagtttta 106684 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 520,781,304 Number of extensions: 27654434 Number of successful extensions: 150041 Number of sequences better than 10.0: 23 Number of HSP's gapped: 150011 Number of HSP's successfully gapped: 63 Length of query: 2894 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2871 Effective length of database: 18,503,978,556 Effective search space: 53124922434276 Effective search space used: 53124922434276 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
