ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf39b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8N290:CC053_HUMAN Putative uncharacterized protein C3orf53 - Ho... 32 7.1
2Q1LH90:Y3614_RALME UPF0161 protein Rmet_3614 - Ralstonia metalli... 32 9.3
3P16761:UL25_HCMVA Tegument protein UL25 - Human cytomegalovirus ... 32 9.3
4Q91Y57:SIG12_MOUSE Sialic acid-binding Ig-like lectin 12 precurs... 32 9.3

>Q8N290:CC053_HUMAN Putative uncharacterized protein C3orf53 - Homo sapiens (Human)|
          Length = 218
 Score = 32.0 bits (71), Expect = 7.1
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 932  ISTPPADLCAPIKLMLPGGGGSTGATRIRCQPGEK*GTSK--RPT 1060
            +  PPA    P+    PGGGG  GA++ R QP  + GT    RPT
Sbjct: 97   LQAPPA---VPLSRAHPGGGGGGGASQPRSQPQGRLGTCSPARPT 138



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>Q1LH90:Y3614_RALME UPF0161 protein Rmet_3614 - Ralstonia metallidurans (strain CH34 /|
            ATCC 43123 / DSM 2839)
          Length = 96

 Score = 31.6 bits (70), Expect = 9.3
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 1082 QRSPARASWLPRPSHLCRSEKTHPLQAKELPPLPSLIGCSAAPTGSTFTGR 1234
            Q   AR +W+      CR  + HP       P+P+  G +AAP  S   GR
Sbjct: 40   QHGAARGTWMAA----CRLCRCHPFTKGGYDPVPATHGTAAAPPASAAPGR 86



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>P16761:UL25_HCMVA Tegument protein UL25 - Human cytomegalovirus (strain AD169) (HHV-5)|
            (Human herpesvirus 5)
          Length = 656

 Score = 31.6 bits (70), Expect = 9.3
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 1040 GTSKRPTTKERSTSQRSPARASWLPRPSHLCRSEKTHPLQAKELPPLPSL 1189
            G +K+P+ K+RS+S+R P  A+  PR S         P +    P +PSL
Sbjct: 81   GAAKKPSEKKRSSSRRQPQIAAGAPRGSPATPKAGKSP-KVSRPPSVPSL 129



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>Q91Y57:SIG12_MOUSE Sialic acid-binding Ig-like lectin 12 precursor - Mus musculus|
            (Mouse)
          Length = 467

 Score = 31.6 bits (70), Expect = 9.3
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = -1

Query: 1038 HFSPGWQRMRVAPVDPPPPGSISLIGAHKSAGGVDITRALHVQREIQTSRGVPVVASSVL 859
            + S  W  + + P     PG + L   H   GGV   +A H       S  +   +S+ L
Sbjct: 287  NLSWSWDNLTLCPSKLSKPGLLELFPVHLKHGGVYTCQAQHALGSQHISLSLSPQSSATL 346

Query: 858  VQHQMAGFIG 829
             +  M  F+G
Sbjct: 347  SEMMMGTFVG 356


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 223,130,535
Number of extensions: 4540717
Number of successful extensions: 15926
Number of sequences better than 10.0: 4
Number of HSP's gapped: 15840
Number of HSP's successfully gapped: 4
Length of query: 509
Length of database: 100,686,439
Length adjustment: 118
Effective length of query: 391
Effective length of database: 68,319,629
Effective search space: 26712974939
Effective search space used: 26712974939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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