ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf45o10 |
|---|---|
| Clone Library Name | barley_pub |
>Q7Y175:UBAX1_ARATH UBA and UBX domain-containing protein At4g15410 - Arabidopsis| thaliana (Mouse-ear cress) Length = 421 Score = 156 bits (395), Expect = 1e-37 Identities = 96/245 (39%), Positives = 129/245 (52%), Gaps = 23/245 (9%) Frame = +3 Query: 39 PNPTANTSAMSSSN---------GNAGKKPAA---SGGR--------GGIRTLADINRXX 158 P+P+ + SA SS G AG+ SG R G IRT AD+NR Sbjct: 86 PSPSRSRSASPSSRAAPYGLRSRGGAGENKETENPSGIRSSRSRQHAGNIRTFADLNRSP 145 Query: 159 XXXXXXXXXXXXXXEPQEYYTGGEKSGMLVQDPTRRNNVDSIFEQARVMGAQQVPLPXXX 338 E EYYTGG+KSGM+VQDP + +VD +F+QAR + P Sbjct: 146 ADGEGSDSD-----EANEYYTGGQKSGMMVQDPKKVKDVDELFDQARQSAVDRPVEPSRS 200 Query: 339 XXXXXXXXXXXXXRVLSGDXXXXXXXXXXXXD---VLHNIHFWNNGFTVDDGPLRGYDDP 509 R+LSG+ ++H I FW NGFTV+DGPLRG+ DP Sbjct: 201 ASTSFTGAA----RLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDP 256 Query: 510 ENADFIESIKKSQCPQELEPADRRTAVHVNVIKRHGDYEEAARPRSSFQGVGRTLGGSSA 689 ENA F+ SI +S+CP ELEPAD++ VHV++++R ++ E +P++ FQGVGRTLG S + Sbjct: 257 ENAAFMNSISRSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPFQGVGRTLGASGS 316 Query: 690 DESPA 704 S A Sbjct: 317 GSSSA 321 Score = 46.2 bits (108), Expect = 2e-04 Identities = 21/36 (58%), Positives = 30/36 (83%), Gaps = 1/36 (2%) Frame = +3 Query: 702 ARPYQLQT-GFPPKQLTDPTQTVDQAGLKNSVIMQK 806 ++ YQL T GFPPKQLT+ QT++QAG+ N+V++QK Sbjct: 385 SKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQK 420
>Q9UNZ2:NSF1C_HUMAN NSFL1 cofactor p47 - Homo sapiens (Human)| Length = 370 Score = 70.5 bits (171), Expect = 1e-11 Identities = 69/266 (25%), Positives = 112/266 (42%), Gaps = 20/266 (7%) Frame = +3 Query: 201 EPQEYYTGG-EKSGMLVQDPTRRNN----VDSIFEQARVMGAQQV------------PLP 329 E Q +Y GG E+SG + P R+ + VD +F+ A+ GA V P P Sbjct: 90 EGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRP 149 Query: 330 XXXXXXXXXXXXXXXXRVLSGDXXXXXXXXXXXXDVLHNIHFWNNGFTVDDGPLRGYDDP 509 ++G+ DV + W +GF++D+G LR Y DP Sbjct: 150 FAGGGYRLGAAPEEESAYVAGEKRQHSSQ-----DVHVVLKLWKSGFSLDNGELRSYQDP 204 Query: 510 ENADFIESIKKSQCPQELEPADRRTAVHVNVIKRHGDYEEAARPRSSFQ---GVGRTLGG 680 NA F+ESI++ + P EL V+++ ++ H D E+ +P+ +F+ G G+ LG Sbjct: 205 SNAQFLESIRRGEVPAELRRLAHGGQVNLD-MEDHRD-EDFVKPKGAFKAFTGEGQKLGS 262 Query: 681 SSADESPARPYQLQTGFPPKQLTDPTQTVDQAGLKNSVIMQKM*CSHQAGSVAQNVFPRH 860 ++ P L T P +Q + + + S + G F Sbjct: 263 TA-------PQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHS 315 Query: 861 H*ISAVEWFIMSIRYCTLHATSNVLV 938 H IS + FI+ R + ATS +L+ Sbjct: 316 HRISDIRLFIVDAR-PAMAATSFILM 340
>O35987:NSF1C_RAT NSFL1 cofactor p47 - Rattus norvegicus (Rat)| Length = 370 Score = 69.7 bits (169), Expect = 2e-11 Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 20/266 (7%) Frame = +3 Query: 201 EPQEYYTGG-EKSGMLVQDPTRRNN----VDSIFEQARVMGAQQV------------PLP 329 E Q +Y GG E+SG + P R+ + VD +F+ A+ GA V P P Sbjct: 90 EGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRP 149 Query: 330 XXXXXXXXXXXXXXXXRVLSGDXXXXXXXXXXXXDVLHNIHFWNNGFTVDDGPLRGYDDP 509 ++G+ DV + W GF++D+G LR Y DP Sbjct: 150 FAGGGYRLGAAPEEESAYVAGERRRHSGQ-----DVHVVLKLWKTGFSLDNGDLRSYQDP 204 Query: 510 ENADFIESIKKSQCPQELEPADRRTAVHVNVIKRHGDYEEAARPRSSFQ---GVGRTLGG 680 NA F+ESI++ + P EL V+++ ++ H D E+ +P+ +F+ G G+ LG Sbjct: 205 SNAQFLESIRRGEVPAELRRLAHGGQVNLD-MEDHRD-EDFVKPKGAFKAFTGEGQKLGS 262 Query: 681 SSADESPARPYQLQTGFPPKQLTDPTQTVDQAGLKNSVIMQKM*CSHQAGSVAQNVFPRH 860 ++ P L T P +Q + + + + + G F Sbjct: 263 TA-------PQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHS 315 Query: 861 H*ISAVEWFIMSIRYCTLHATSNVLV 938 H IS + FI+ R + ATS VL+ Sbjct: 316 HRISDIRLFIVDAR-PAMAATSFVLM 340
>Q9CZ44:NSF1C_MOUSE NSFL1 cofactor p47 - Mus musculus (Mouse)| Length = 370 Score = 69.7 bits (169), Expect = 2e-11 Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 20/266 (7%) Frame = +3 Query: 201 EPQEYYTGG-EKSGMLVQDPTRRNN----VDSIFEQARVMGAQQV------------PLP 329 E Q +Y GG E+SG + P R+ + VD +F+ A+ GA V P P Sbjct: 90 EGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRP 149 Query: 330 XXXXXXXXXXXXXXXXRVLSGDXXXXXXXXXXXXDVLHNIHFWNNGFTVDDGPLRGYDDP 509 ++G+ DV + W GF++D+G LR Y DP Sbjct: 150 FAGGGYRLGAAPEEESAYVAGERRRHSGQ-----DVHVVLKLWKTGFSLDNGDLRSYQDP 204 Query: 510 ENADFIESIKKSQCPQELEPADRRTAVHVNVIKRHGDYEEAARPRSSFQ---GVGRTLGG 680 NA F+ESI++ + P EL V+++ ++ H D E+ +P+ +F+ G G+ LG Sbjct: 205 SNAQFLESIRRGEVPAELRRLAHGGQVNLD-MEDHRD-EDFVKPKGAFKAFTGEGQKLGS 262 Query: 681 SSADESPARPYQLQTGFPPKQLTDPTQTVDQAGLKNSVIMQKM*CSHQAGSVAQNVFPRH 860 ++ P L T P +Q + + + + + G F Sbjct: 263 TA-------PQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHS 315 Query: 861 H*ISAVEWFIMSIRYCTLHATSNVLV 938 H IS + FI+ R + ATS VL+ Sbjct: 316 HRISDIRLFIVDAR-PAMAATSFVLM 340
>P34223:UBX1_YEAST UBX domain-containing protein 1 - Saccharomyces cerevisiae (Baker's| yeast) Length = 423 Score = 61.6 bits (148), Expect = 5e-09 Identities = 57/203 (28%), Positives = 82/203 (40%), Gaps = 22/203 (10%) Frame = +3 Query: 201 EPQEYYTGGEKSGMLVQDPTRRNNV-DSIFEQAR---VMGAQQVPLPXXXXXXXXXXXXX 368 +P+ + GGE SG+ V DP+ N++ + E+AR MGA+ Sbjct: 144 QPRNTFAGGETSGLEVTDPSDPNSLLKDLLEKARRGGQMGAENGFRDDEDHEMGANRFTG 203 Query: 369 XXXRVLSGDXXXXXXXXXXXXD-------VLHNIHFWNNGFTVDDGPLRGYDDPENADFI 527 R+ S V I FW GF V DGPL YDDP N+ ++ Sbjct: 204 RGFRLGSTIDAADEVVEDNTSQSQRRPEKVTREITFWKEGFQVADGPLYRYDDPANSFYL 263 Query: 528 ESIKKSQCPQELEPADRRTAVHVNVIKRHGD-YEEAARPRSSFQGVGRTLG----GSSA- 689 + + + P +L V VNV K+ + Y+ R F G G+ LG G S+ Sbjct: 264 SELNQGRAPLKLLDVQFGQEVEVNVYKKLDESYKAPTRKLGGFSGQGQRLGSPIPGESSP 323 Query: 690 -----DESPARPYQLQTGFPPKQ 743 +E+PA Q PKQ Sbjct: 324 AEVPKNETPAAQEQPMPDNEPKQ 346 Score = 33.1 bits (74), Expect = 1.8 Identities = 15/42 (35%), Positives = 26/42 (61%) Frame = +3 Query: 681 SSADESPARPYQLQTGFPPKQLTDPTQTVDQAGLKNSVIMQK 806 S+A+ P+R + L FP K +++ T+ A L NSV++Q+ Sbjct: 380 SNANTDPSRNFTLNYAFPIKPISNDETTLKDADLLNSVVVQR 421
>Q9UT81:UBX3_SCHPO UBX domain-containing protein 3 - Schizosaccharomyces pombe| (Fission yeast) Length = 410 Score = 57.0 bits (136), Expect = 1e-07 Identities = 27/79 (34%), Positives = 41/79 (51%) Frame = +3 Query: 447 IHFWNNGFTVDDGPLRGYDDPENADFIESIKKSQCPQELEPADRRTAVHVNVIKRHGDYE 626 ++FW NGF+VDDGP+ YDDP N + + I + P L ++V+ +H E Sbjct: 216 LYFWRNGFSVDDGPIYTYDDPANQEMLRYINSGRAPLHLLGVSMNQP--IDVVVQHRMDE 273 Query: 627 EAARPRSSFQGVGRTLGGS 683 + P F G G+ LG + Sbjct: 274 DYVAPFKPFSGKGQRLGST 292
>P68543:UBXD4_HUMAN UBX domain-containing protein 4 - Homo sapiens (Human)| Length = 259 Score = 49.3 bits (116), Expect = 2e-05 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Frame = +3 Query: 444 NIHFWNNGFTVDDGPLRGYDDPENADFIESIKKSQCPQELEPADRRTAVHVNVIKRHGDY 623 NI W NGFTV+D R Y D + F+ SIKK + P EL+ + V V V + + Sbjct: 64 NIKLWKNGFTVNDD-FRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKNEI 122 Query: 624 EEAARP-RSSFQGVGRTLGGSS 686 + +P F G G LG ++ Sbjct: 123 CLSTKPVFQPFSGQGHRLGSAT 144
>Q99KJ0:UBXD4_MOUSE UBX domain-containing protein 4 - Mus musculus (Mouse)| Length = 258 Score = 47.8 bits (112), Expect = 7e-05 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +3 Query: 444 NIHFWNNGFTVDDGPLRGYDDPENADFIESIKKSQCPQELEPADRRTAVHVNVIKRHGDY 623 NI W NGFTV+D R Y D + F+ SIKK + P EL + V V V + + Sbjct: 65 NIKLWKNGFTVNDD-FRSYSDGASQQFLNSIKKGELPSELWGIFDKEEVDVKVEDKKNEV 123 Query: 624 EEAARP-RSSFQGVGRTLGGSS 686 + +P F G G LG ++ Sbjct: 124 CMSTKPVFQPFSGQGHRLGSAT 145
>O15054:JMJD3_HUMAN JmjC domain-containing protein 3 - Homo sapiens (Human)| Length = 1679 Score = 34.3 bits (77), Expect = 0.82 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -2 Query: 238 PLFSPPV*YSWGSSESLPLPPAPG-NPEGARLMSARVRMPPRPPDA 104 P+ PP Y S + LP PP+P NP+ L+ + +PP PP + Sbjct: 565 PVSFPPPPYLARSIDPLPRPPSPAQNPQDPPLVPLTLALPPAPPSS 610
>Q01831:XPC_HUMAN DNA-repair protein complementing XP-C cells - Homo sapiens (Human)| Length = 940 Score = 32.0 bits (71), Expect = 4.1 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = +3 Query: 9 ASRVHDATREPNPTANTSAMSSSNGNAGKKPAASGGRGGIRTLADINR 152 ASR H + +P+ ++ SSS+ GKK + G + R++A I++ Sbjct: 483 ASRTHRGSHRKDPSLPVASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQ 530
>Q6MDK6:DXS_PARUW 1-deoxy-D-xylulose-5-phosphate synthase - Protochlamydia| amoebophila (strain UWE25) Length = 635 Score = 32.0 bits (71), Expect = 4.1 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 2/94 (2%) Frame = +3 Query: 483 GPLRGYDDPENADFIESIKKSQCPQELEPADRRTAVHVNVIKRHGD-YEEAARPRSSFQG 659 GP+ G+D + D +E +K S P V ++V+ R G+ +EA + S+ G Sbjct: 251 GPIDGHDTKKLVDVLEGVKDSNWP-----------VIIHVLTRKGEGMDEAIKNPISYHG 299 Query: 660 VGRTLGGSSADESPARPYQLQTG-FPPKQLTDPT 758 A+P+ TG F P +T PT Sbjct: 300 --------------AKPFSKDTGKFLPNPVTKPT 319
>Q04584:ZYX_CHICK Zyxin - Gallus gallus (Chicken)| Length = 542 Score = 31.6 bits (70), Expect = 5.3 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -2 Query: 202 SSESLPLPPAPGNPEGARL-MSARVRMPPRPPDAAGFFPALPLE 74 ++E LPLPP P P G L S+ PP PP FP P E Sbjct: 78 TAEELPLPPPP--PPGEELSFSSNCAFPPPPPPFEEPFPPAPDE 119
>Q2ULU3:STE20_ASPOR Serine/threonine-protein kinase ste20 - Aspergillus oryzae| Length = 848 Score = 31.2 bits (69), Expect = 6.9 Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 12/88 (13%) Frame = -2 Query: 307 PITLACSKIES---TLFLLVGS*TSIPLFSPPV*YSWGSSESLPLPPAP---GNPEGARL 146 P+T + S+ S T + VG S P SP + S P P P G P + Sbjct: 307 PVTTSSSQPSSGGSTPYGTVGQRASSPT-SPRFPQNHEGSFENPRAPPPIPRGAPAATQA 365 Query: 145 MSARV------RMPPRPPDAAGFFPALP 80 MS V R PPRPP AA PA P Sbjct: 366 MSPPVGGLVPNRAPPRPPAAANMTPARP 393
>P81489:PRPP_HUMAN Salivary proline-rich protein II-1 - Homo sapiens (Human)| Length = 174 Score = 30.8 bits (68), Expect = 9.1 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = -2 Query: 205 GSSESLPLPPAPGNPEGARLMSARVRMPPRPPDAAG 98 G ++S PP PG PEG P RPP G Sbjct: 90 GGNQSQGTPPPPGKPEGRPPQQGGPGKPERPPPQGG 125
>Q9Y4H2:IRS2_HUMAN Insulin receptor substrate 2 - Homo sapiens (Human)| Length = 1338 Score = 30.8 bits (68), Expect = 9.1 Identities = 20/59 (33%), Positives = 25/59 (42%) Frame = -2 Query: 193 SLPLPPAPGNPEGARLMSARVRMPPRPPDAAGFFPALPLEELIADVFAVGFGSRVASCT 17 S P PP P P + S + PP PP A G LP +A G S ++S T Sbjct: 1011 SSPYPPLPPRPSASPSSSLQ---PPPPPPAPGELYRLPPASAVATAQGPGAASSLSSDT 1066 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 158,959,514 Number of extensions: 3354720 Number of successful extensions: 10834 Number of sequences better than 10.0: 15 Number of HSP's gapped: 10774 Number of HSP's successfully gapped: 17 Length of query: 334 Length of database: 100,686,439 Length adjustment: 114 Effective length of query: 220 Effective length of database: 69,416,809 Effective search space: 15271697980 Effective search space used: 15271697980 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
