ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf45n17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104921.1| Zea mays PCO111346 mRNA sequence 147 8e-32
2ref|NM_001054911.1| Oryza sativa (japonica cultivar-group) Os02g... 66 2e-07
3dbj|AK065845.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
5dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
6gb|AC147143.2| Pan troglodytes BAC clone CH251-267L18 from Y, co... 46 0.21
7gb|AC006338.6| Homo sapiens BAC clone RP11-539D10 from Y, comple... 46 0.21
8gb|AC147114.2| Pan troglodytes BAC clone CH251-548O14 from Y, co... 46 0.21
9gb|AC147515.1| Pan troglodytes BAC clone CH251-558O8 from Y, com... 46 0.21
10gb|AC139191.1| Pan troglodytes BAC clone RP43-32G19 from Y, comp... 46 0.21
11gb|AC010088.4| Homo sapiens BAC clone RP11-289L7 from Y, complet... 46 0.21
12gb|AC006983.4|AC006983 Homo sapiens BAC clone RP11-70G12 from Y,... 46 0.21
13gb|AC146477.3| Pan troglodytes BAC clone CH251-514B8 from chromo... 46 0.21
14gb|AC010089.4|AC010089 Homo sapiens BAC clone RP11-290O3 from Y,... 46 0.21
15gb|AF164343.1|AF164343 Homo sapiens chromosome Y BAC clone 148I1... 46 0.21
16gb|AC000022.1|AC000022 Genomic sequence from Human Y, complete s... 46 0.21
17gb|AC187012.11| Canis Familiaris chromosome 23, clone XX-155L5, ... 42 3.3
18gb|AC154520.3| Mus musculus BAC clone RP23-471P16 from chromosom... 42 3.3
19emb|CR753876.17| Zebrafish DNA sequence from clone DKEYP-116A7 i... 42 3.3
20gb|AC109782.7| Homo sapiens 3 BAC RP11-346M10 (Roswell Park Canc... 42 3.3
21emb|Z79697.1|CEF58H10 Caenorhabditis elegans Cosmid F58H10, comp... 42 3.3
22gb|AC091976.2| Homo sapiens chromosome 5 clone RP11-528F16, comp... 42 3.3
23gb|AC158394.2| Mus musculus BAC clone RP23-406A1 from chromosome... 42 3.3
24gb|AC008428.5| Homo sapiens chromosome 5 clone CTC-308D9, comple... 42 3.3
25dbj|AP006131.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 3.3
26dbj|AP000437.5| Homo sapiens genomic DNA, chromosome 11 clone:CM... 42 3.3 
>gb|AY104921.1| Zea mays PCO111346 mRNA sequence
          Length = 978
 Score =  147 bits (74), Expect = 8e-32
 Identities = 149/174 (85%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaacttctcagaagattccaaactgatgttggtgagctagcgacagaaggaagtaagaat 64
           ||||| || ||||||||||||| ||||||||| ||||| |||||||||| ||||||||||
Sbjct: 182 gaactccttagaagattccaaaatgatgttggcgagctggcgacagaagaaagtaagaat 241

                                                                       
Query: 65  tttgcggagaggaatatatatttgattcttgtacccaataaactagccatacagaaagaa 124
           || |||||||||||||||||| || ||||||| ||||||||  |||| ||||||||||||
Sbjct: 242 ttcgcggagaggaatatatatctggttcttgttcccaataagatagctatacagaaagaa 301

                                                                 
Query: 125 caagatggggtgagcaaaaaggatgatgtggaaggagagacggaccaatcagac 178
           || ||||   ||| |||||||| || ||||  || |||||  ||||||||||||
Sbjct: 302 caggatgaattgaacaaaaagggtgctgtgagagaagagaaagaccaatcagac 355



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 46/52 (88%), Gaps = 3/52 (5%)
 Strand = Plus / Plus

                                                               
Query: 257 ctggaggaaagtaaggaacccgagacagaagaagtctcagcaaatgtttgat 308
           ||||||||||||| ||||||||||   | ||||||||||||||| |||||||
Sbjct: 413 ctggaggaaagtatggaacccgag---gcagaagtctcagcaaacgtttgat 461
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>ref|NM_001054911.1| Oryza sativa (japonica cultivar-group) Os02g0794400 (Os02g0794400)
           mRNA, complete cds
          Length = 1239

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 99/121 (81%)
 Strand = Plus / Plus

                                                                       
Query: 28  tgatgttggtgagctagcgacagaaggaagtaagaattttgcggagaggaatatatattt 87
           |||||| |||||| | || ||||||| |||||| ||||||  ||| |||||||||||| |
Sbjct: 491 tgatgtcggtgagatggcaacagaagaaagtaaaaattttcaggaaaggaatatatatct 550

                                                                       
Query: 88  gattcttgtacccaataaactagccatacagaaagaacaagatggggtgagcaaaaagga 147
             ||||||| ||||||||  |||| ||||| ||||| || |||| | ||| |||||||||
Sbjct: 551 tgttcttgttcccaataagatagctatacaaaaagagcaggatgagctgaacaaaaagga 610

            
Query: 148 t 148
           |
Sbjct: 611 t 611



 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 286 agaagtctcagcaaatgtttgat 308
           |||||||||||||||||||||||
Sbjct: 704 agaagtctcagcaaatgtttgat 726
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>dbj|AK065845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042M03, full
           insert sequence
          Length = 1240

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 99/121 (81%)
 Strand = Plus / Plus

                                                                       
Query: 28  tgatgttggtgagctagcgacagaaggaagtaagaattttgcggagaggaatatatattt 87
           |||||| |||||| | || ||||||| |||||| ||||||  ||| |||||||||||| |
Sbjct: 492 tgatgtcggtgagatggcaacagaagaaagtaaaaattttcaggaaaggaatatatatct 551

                                                                       
Query: 88  gattcttgtacccaataaactagccatacagaaagaacaagatggggtgagcaaaaagga 147
             ||||||| ||||||||  |||| ||||| ||||| || |||| | ||| |||||||||
Sbjct: 552 tgttcttgttcccaataagatagctatacaaaaagagcaggatgagctgaacaaaaagga 611

            
Query: 148 t 148
           |
Sbjct: 612 t 612



 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 286 agaagtctcagcaaatgtttgat 308
           |||||||||||||||||||||||
Sbjct: 705 agaagtctcagcaaatgtttgat 727
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                            
Query: 47       acagaaggaagtaagaattttgcggagaggaatatatatttgattcttgtacccaataaa 106
                ||||||| |||||| ||||||  ||| |||||||||||| |  ||||||| |||||||| 
Sbjct: 33778272 acagaagaaagtaaaaattttcaggaaaggaatatatatcttgttcttgttcccaataag 33778213

                                                          
Query: 107      ctagccatacagaaagaacaagatggggtgagcaaaaaggat 148
                 |||| ||||| ||||| || |||| | ||| ||||||||||
Sbjct: 33778212 atagctatacaaaaagagcaggatgagctgaacaaaaaggat 33778171



 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 286      agaagtctcagcaaatgtttgat 308
                |||||||||||||||||||||||
Sbjct: 33778078 agaagtctcagcaaatgtttgat 33778056
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>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0700F06
          Length = 139277

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                          
Query: 47     acagaaggaagtaagaattttgcggagaggaatatatatttgattcttgtacccaataaa 106
              ||||||| |||||| ||||||  ||| |||||||||||| |  ||||||| |||||||| 
Sbjct: 109139 acagaagaaagtaaaaattttcaggaaaggaatatatatcttgttcttgttcccaataag 109080

                                                        
Query: 107    ctagccatacagaaagaacaagatggggtgagcaaaaaggat 148
               |||| ||||| ||||| || |||| | ||| ||||||||||
Sbjct: 109079 atagctatacaaaaagagcaggatgagctgaacaaaaaggat 109038



 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 286    agaagtctcagcaaatgtttgat 308
              |||||||||||||||||||||||
Sbjct: 108945 agaagtctcagcaaatgtttgat 108923
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>gb|AC147143.2| Pan troglodytes BAC clone CH251-267L18 from Y, complete sequence
          Length = 187629

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 108   tagccatacagaaagaacaagat 130
             |||||||||||||||||||||||
Sbjct: 53623 tagccatacagaaagaacaagat 53645
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>gb|AC006338.6| Homo sapiens BAC clone RP11-539D10 from Y, complete sequence
          Length = 175990

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 108   tagccatacagaaagaacaagat 130
             |||||||||||||||||||||||
Sbjct: 77757 tagccatacagaaagaacaagat 77735
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>gb|AC147114.2| Pan troglodytes BAC clone CH251-548O14 from Y, complete sequence
          Length = 229006

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 108    tagccatacagaaagaacaagat 130
              |||||||||||||||||||||||
Sbjct: 203356 tagccatacagaaagaacaagat 203378
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>gb|AC147515.1| Pan troglodytes BAC clone CH251-558O8 from Y, complete sequence
          Length = 209207

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 108    tagccatacagaaagaacaagat 130
              |||||||||||||||||||||||
Sbjct: 150800 tagccatacagaaagaacaagat 150778
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>gb|AC139191.1| Pan troglodytes BAC clone RP43-32G19 from Y, complete sequence
          Length = 170201

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 108   tagccatacagaaagaacaagat 130
             |||||||||||||||||||||||
Sbjct: 14314 tagccatacagaaagaacaagat 14336
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>gb|AC010088.4| Homo sapiens BAC clone RP11-289L7 from Y, complete sequence
          Length = 107687

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 108   tagccatacagaaagaacaagat 130
             |||||||||||||||||||||||
Sbjct: 88909 tagccatacagaaagaacaagat 88931
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>gb|AC006983.4|AC006983 Homo sapiens BAC clone RP11-70G12 from Y, complete sequence
          Length = 180345

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 108   tagccatacagaaagaacaagat 130
             |||||||||||||||||||||||
Sbjct: 47858 tagccatacagaaagaacaagat 47836
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>gb|AC146477.3| Pan troglodytes BAC clone CH251-514B8 from chromosome y, complete
             sequence
          Length = 170833

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 108   tagccatacagaaagaacaagat 130
             |||||||||||||||||||||||
Sbjct: 58532 tagccatacagaaagaacaagat 58554
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>gb|AC010089.4|AC010089 Homo sapiens BAC clone RP11-290O3 from Y, complete sequence
          Length = 103356

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 108   tagccatacagaaagaacaagat 130
             |||||||||||||||||||||||
Sbjct: 14325 tagccatacagaaagaacaagat 14347
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>gb|AF164343.1|AF164343 Homo sapiens chromosome Y BAC clone 148I14 from Deleted in Azoospermia
             (DAZ) locus
          Length = 85674

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 108   tagccatacagaaagaacaagat 130
             |||||||||||||||||||||||
Sbjct: 78479 tagccatacagaaagaacaagat 78457
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>gb|AC000022.1|AC000022 Genomic sequence from Human Y, complete sequence
          Length = 43795

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 108   tagccatacagaaagaacaagat 130
             |||||||||||||||||||||||
Sbjct: 22108 tagccatacagaaagaacaagat 22086
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>gb|AC187012.11| Canis Familiaris chromosome 23, clone XX-155L5, complete sequence
          Length = 185780

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     gattgaacttctcagaagatt 21
             |||||||||||||||||||||
Sbjct: 59454 gattgaacttctcagaagatt 59434
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>gb|AC154520.3| Mus musculus BAC clone RP23-471P16 from chromosome 14, complete
             sequence
          Length = 199186

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 112   catacagaaagaacaagatgg 132
             |||||||||||||||||||||
Sbjct: 15669 catacagaaagaacaagatgg 15649
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>emb|CR753876.17| Zebrafish DNA sequence from clone DKEYP-116A7 in linkage group 19,
             complete sequence
          Length = 118451

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 77    aatatatatttgattcttgta 97
             |||||||||||||||||||||
Sbjct: 53529 aatatatatttgattcttgta 53549
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>gb|AC109782.7| Homo sapiens 3 BAC RP11-346M10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163591

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 368    taaatacaaggatggtgctcttgta 392
              ||||||||||||||||| |||||||
Sbjct: 136829 taaatacaaggatggtgttcttgta 136853
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>emb|Z79697.1|CEF58H10 Caenorhabditis elegans Cosmid F58H10, complete sequence
          Length = 20303

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 497  tctgaacatttttgttcggag 517
            |||||||||||||||||||||
Sbjct: 1459 tctgaacatttttgttcggag 1439
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>gb|AC091976.2| Homo sapiens chromosome 5 clone RP11-528F16, complete sequence
          Length = 175529

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 808   tgtgtagagtaatttctatccactt 832
             ||||||| |||||||||||||||||
Sbjct: 38251 tgtgtagtgtaatttctatccactt 38227
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>gb|AC158394.2| Mus musculus BAC clone RP23-406A1 from chromosome 14, complete sequence
          Length = 185214

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 112   catacagaaagaacaagatgg 132
             |||||||||||||||||||||
Sbjct: 66954 catacagaaagaacaagatgg 66974
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>gb|AC008428.5| Homo sapiens chromosome 5 clone CTC-308D9, complete sequence
          Length = 148069

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 808   tgtgtagagtaatttctatccactt 832
             ||||||| |||||||||||||||||
Sbjct: 14597 tgtgtagtgtaatttctatccactt 14621
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>dbj|AP006131.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28E04, TM0229,
             complete sequence
          Length = 95108

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 48    cagaaggaagtaagaattttg 68
             |||||||||||||||||||||
Sbjct: 88208 cagaaggaagtaagaattttg 88188
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>dbj|AP000437.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-39H21, complete
             sequence
          Length = 150125

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 281   acagaagaagtctcagcaaat 301
             |||||||||||||||||||||
Sbjct: 81518 acagaagaagtctcagcaaat 81538


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 168,541,161
Number of extensions: 9284457
Number of successful extensions: 157856
Number of sequences better than 10.0: 26
Number of HSP's gapped: 157855
Number of HSP's successfully gapped: 31
Length of query: 870
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 848
Effective length of database: 18,508,616,841
Effective search space: 15695307081168
Effective search space used: 15695307081168
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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