ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf45m21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U39860.1|OSU39860 Oryza sativa transcriptional activator (Ra) mRNA, complete cds Length = 2517 Score = 287 bits (145), Expect = 4e-74 Identities = 304/357 (85%) Strand = Plus / Plus Query: 154 ccagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttc 213 |||||| ||||| || | ||||||||||||||||| || |||||||| ||||||||||| Sbjct: 497 ccagcttgctgctgcagcgaggagcatcaattggacgtatgccatattttggtccatttc 556 Query: 214 aaccagccgtccaggggtactgacctggaaggacgggttctacaacggcgagataaagac 273 ||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 557 aaccagccgcccaggagttctgacttggaaggacggcttctacaacggcgagataaagac 616 Query: 274 gaggaaggtcaccagctcggcggacctcaccgccgaccagctcctcctgcagaggagcga 333 ||||||| |||| | ||| | ||||||| |||||| |||| |||||||||| ||||| Sbjct: 617 gaggaagatcacgaactccatgaacctcacggccgacgagctggtcctgcagagaagcga 676 Query: 334 gcagctgcgggagctctaccagtccctcctgtccggccagtgcgaccaccgggggaggcg 393 ||||||| ||||||||||| | || ||||| |||||| |||||| |||||| | |||| | Sbjct: 677 gcagctgagggagctctacgactctctcctctccggcgagtgcggccaccgagcgaggag 736 Query: 394 cccggccgccgcgctctcgccggaggacctcggggacgccgaatggtactacgccgtctg 453 || | ||| ||||| | |||||| || ||||||||| | ||||||||||||| |||||| Sbjct: 737 gcccgtcgctgcgctgttgccggaagatctcggggacacggaatggtactacgtcgtctg 796 Query: 454 catgagctatgccttccgccctggccaagggttgccaggcagaagctttgcgagcaa 510 ||||| ||| |||||| |||| ||||||||||||||||||| |||||| || ||||| Sbjct: 797 catgacctacgccttcggccccggccaagggttgccaggcaaaagcttcgcaagcaa 853
>ref|NM_001060067.1| Oryza sativa (japonica cultivar-group) Os04g0557800 (Os04g0557800) mRNA, complete cds Length = 2497 Score = 264 bits (133), Expect = 6e-67 Identities = 301/357 (84%) Strand = Plus / Plus Query: 154 ccagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttc 213 |||||| ||||| || | ||||||||||||||||| || |||||||| ||||||||||| Sbjct: 496 ccagcttgctgctgcagcgaggagcatcaattggacgtatgccatattttggtccatttc 555 Query: 214 aaccagccgtccaggggtactgacctggaaggacgggttctacaacggcgagataaagac 273 ||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 556 aaccagccgcccaggagttctgacttggaaggacggcttctacaacggcgagataaagac 615 Query: 274 gaggaaggtcaccagctcggcggacctcaccgccgaccagctcctcctgcagaggagcga 333 ||||||| |||| | ||| | |||||| |||||| |||| |||||||||| ||||| Sbjct: 616 gaggaagatcacgaactccatgaacctcatggccgacgagctggtcctgcagagaagcga 675 Query: 334 gcagctgcgggagctctaccagtccctcctgtccggccagtgcgaccaccgggggaggcg 393 ||||||| ||||||||||| | || ||||| |||||| |||||| |||||| | |||| | Sbjct: 676 gcagctgagggagctctacgactctctcctctccggcgagtgcggccaccgagcgaggag 735 Query: 394 cccggccgccgcgctctcgccggaggacctcggggacgccgaatggtactacgccgtctg 453 || | ||| || || | |||||| || ||||||||| | ||||||||||||| |||||| Sbjct: 736 gcccgtcgctgcactgttgccggaagatctcggggacacggaatggtactacgtcgtctg 795 Query: 454 catgagctatgccttccgccctggccaagggttgccaggcagaagctttgcgagcaa 510 ||||| ||| |||||| |||| |||||||||||||||||| |||||| || ||||| Sbjct: 796 catgacctacgccttcggcccccgccaagggttgccaggcaaaagcttcgcaagcaa 852
>dbj|AB021079.1| Oryza sativa Plw-OSB1 mRNA for R-type basic helix-loop-helix protein, complete cds Length = 2168 Score = 264 bits (133), Expect = 6e-67 Identities = 301/357 (84%) Strand = Plus / Plus Query: 154 ccagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttc 213 |||||| ||||| || | ||||||||||||||||| || |||||||| ||||||||||| Sbjct: 274 ccagcttgctgctgcagcgaggagcatcaattggacgtatgccatattttggtccatttc 333 Query: 214 aaccagccgtccaggggtactgacctggaaggacgggttctacaacggcgagataaagac 273 ||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 334 aaccagccgcccaggagttctgacttggaaggacggcttctacaacggcgagataaagac 393 Query: 274 gaggaaggtcaccagctcggcggacctcaccgccgaccagctcctcctgcagaggagcga 333 ||||||| |||| | ||| | ||||||| |||||| |||| |||||||||| ||||| Sbjct: 394 gaggaagatcacgaactccatgaacctcacggccgacgagctggtcctgcagagaagcga 453 Query: 334 gcagctgcgggagctctaccagtccctcctgtccggccagtgcgaccaccgggggaggcg 393 ||||||| ||||||||||| | || ||||| |||||| |||||| |||||| | |||| | Sbjct: 454 gcagctgagggagctctacgactctctcctctccggcgagtgcggccaccgagcgaggag 513 Query: 394 cccggccgccgcgctctcgccggaggacctcggggacgccgaatggtactacgccgtctg 453 || | ||| || || | |||||| || |||| |||| | ||||||||||||| |||||| Sbjct: 514 gcccgtcgctgcactgttgccggaagatctcgcggacacggaatggtactacgtcgtctg 573 Query: 454 catgagctatgccttccgccctggccaagggttgccaggcagaagctttgcgagcaa 510 ||||| ||| |||||| |||| |||||||||||||||||| |||||| || ||||| Sbjct: 574 catgacctacgccttcggcccccgccaagggttgccaggcaaaagcttcgcaagcaa 630
>ref|NM_001060065.1| Oryza sativa (japonica cultivar-group) Os04g0557200 (Os04g0557200) mRNA, partial cds Length = 1980 Score = 234 bits (118), Expect = 5e-58 Identities = 391/482 (81%) Strand = Plus / Plus Query: 161 gctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttcaaccagc 220 ||||| |||||||||||||||| |||||| || || || || ||||||||||||||||| Sbjct: 203 gctgctgctgtgaggagcatcagttggagttatgcgatcttttggtccatttcaaccagt 262 Query: 221 cgtccaggggtactgacctggaaggacgggttctacaacggcgagataaagacgaggaag 280 | ||||| || |||| ||||| || |||||||||||||||| | |||||||||||||| Sbjct: 263 tgcccaggagttttgacttggaatgatgggttctacaacggcgtggtaaagacgaggaag 322 Query: 281 gtcaccagctcggcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctg 340 | ||| ||| || |||||||| || | |||||| || ||||||| |||||||| ||| Sbjct: 323 atatccaactcagcagacctcacggctggtcagctcgtcgtgcagagaagcgagcaactg 382 Query: 341 cgggagctctaccagtccctcctgtccggccagtgcgaccaccgggggaggcgcccggcc 400 ||||||| ||| | || |||||||||||| ||||||||||||||| |||| | || Sbjct: 383 agggagctttactactctctcctgtccggcgagtgcgaccaccgggcgaggaggcccatt 442 Query: 401 gccgcgctctcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagc 460 |||||||| |||||||| || |||| ||| | ||||||||||||| ||||||||||| | Sbjct: 443 gccgcgctatcgccggaagatctcgcagacacagaatggtactacgtcgtctgcatgacc 502 Query: 461 tatgccttccgccctggccaagggttgccaggcagaagctttgcgagcaacgagcctgtt 520 || |||||| || ||||||||| ||||||||| ||||| ||| ||||| | ||||| Sbjct: 503 tactccttccaacccggccaagggctgccaggcaaaagctatgcaagcaatgcatctgtt 562 Query: 521 tggctgtgcaatgctcagtgcgcagacaccaaaactttccaacgctcgctcttagcgaag 580 |||||| |||||||||||| ||||| | |||||| || | ||||||||| ||||| ||| Sbjct: 563 tggctgcgcaatgctcagtctgcagatagcaaaacatttctacgctcgctattagctaag 622 Query: 581 acgacgtctatccagacggtcgcctgcattcccttgatgggtggtgtgcttgagctcggg 640 | ||||||| ||||| || |||||| ||||| | | |||| ||||||||||| ||| Sbjct: 623 agcgcgtctattcagacaatcatctgcatccccttcacgagtggcgtgcttgagctgggg 682 Query: 641 ac 642 || Sbjct: 683 ac 684
>dbj|AK111704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013E24, full insert sequence Length = 1983 Score = 234 bits (118), Expect = 5e-58 Identities = 391/482 (81%) Strand = Plus / Plus Query: 161 gctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttcaaccagc 220 ||||| |||||||||||||||| |||||| || || || || ||||||||||||||||| Sbjct: 206 gctgctgctgtgaggagcatcagttggagttatgcgatcttttggtccatttcaaccagt 265 Query: 221 cgtccaggggtactgacctggaaggacgggttctacaacggcgagataaagacgaggaag 280 | ||||| || |||| ||||| || |||||||||||||||| | |||||||||||||| Sbjct: 266 tgcccaggagttttgacttggaatgatgggttctacaacggcgtggtaaagacgaggaag 325 Query: 281 gtcaccagctcggcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctg 340 | ||| ||| || |||||||| || | |||||| || ||||||| |||||||| ||| Sbjct: 326 atatccaactcagcagacctcacggctggtcagctcgtcgtgcagagaagcgagcaactg 385 Query: 341 cgggagctctaccagtccctcctgtccggccagtgcgaccaccgggggaggcgcccggcc 400 ||||||| ||| | || |||||||||||| ||||||||||||||| |||| | || Sbjct: 386 agggagctttactactctctcctgtccggcgagtgcgaccaccgggcgaggaggcccatt 445 Query: 401 gccgcgctctcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagc 460 |||||||| |||||||| || |||| ||| | ||||||||||||| ||||||||||| | Sbjct: 446 gccgcgctatcgccggaagatctcgcagacacagaatggtactacgtcgtctgcatgacc 505 Query: 461 tatgccttccgccctggccaagggttgccaggcagaagctttgcgagcaacgagcctgtt 520 || |||||| || ||||||||| ||||||||| ||||| ||| ||||| | ||||| Sbjct: 506 tactccttccaacccggccaagggctgccaggcaaaagctatgcaagcaatgcatctgtt 565 Query: 521 tggctgtgcaatgctcagtgcgcagacaccaaaactttccaacgctcgctcttagcgaag 580 |||||| |||||||||||| ||||| | |||||| || | ||||||||| ||||| ||| Sbjct: 566 tggctgcgcaatgctcagtctgcagatagcaaaacatttctacgctcgctattagctaag 625 Query: 581 acgacgtctatccagacggtcgcctgcattcccttgatgggtggtgtgcttgagctcggg 640 | ||||||| ||||| || |||||| ||||| | | |||| ||||||||||| ||| Sbjct: 626 agcgcgtctattcagacaatcatctgcatccccttcacgagtggcgtgcttgagctgggg 685 Query: 641 ac 642 || Sbjct: 686 ac 687
>dbj|AB021080.1| Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds Length = 1790 Score = 232 bits (117), Expect = 2e-57 Identities = 389/477 (81%), Gaps = 2/477 (0%) Strand = Plus / Plus Query: 161 gctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttcaaccagc 220 ||||| |||||||||||||||| |||||| ||| |||| || ||||||| ||||||||| Sbjct: 124 gctgctgctgtgaggagcatcagttggagttacaccatcttttggtccacttcaaccagt 183 Query: 221 cgtccaggggtactgacctggaaggacgggttctacaacggcgagataaagacgaggaag 280 | || || || ||||| ||||| || || ||||||||||||||| |||||||||||||| Sbjct: 184 ctcccgggagttctgacttggaacgatggattctacaacggcgaggtaaagacgaggaag 243 Query: 281 gtcaccagctcggcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctg 340 | ||| || | |||||||||||| ||||||||| |||||| ||| |||||||| ||| Sbjct: 244 atatccaacttagaggacctcaccgctgaccagctcgtcctgcggagaagcgagcaactg 303 Query: 341 cgggagctctaccagtccctcctgtccggccagtgcgaccaccgggggaggcgcccggcc 400 | ||||||||| | || |||||||||||| ||||||||||||||| ||| || | | Sbjct: 304 agcgagctctactactctctcctgtccggcgagtgcgaccaccgggcaaggaagcccgtc 363 Query: 401 gccgcgctctcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagc 460 ||||| || |||||||| || ||| |||| | ||||||||||||| |||||||||| Sbjct: 364 gccgcactgtcgccggaagatatcgcggacacagaatggtactacgttgtctgcatgaca 423 Query: 461 tatgccttccgccctggccaagggttgccaggcagaagctttgcgagcaa-cgagcctgt 519 || ||||| || || ||||||||||| || |||||||||| ||| ||||| ||| |||| Sbjct: 424 tacgcctttcgacccggccaagggttacccggcagaagctatgcaagcaatcga-tctgt 482 Query: 520 ttggctgtgcaatgctcagtgcgcagacaccaaaactttccaacgctcgctcttagcgaa 579 |||| ||||||||||||||| ||||| | |||||| || | ||| ||||||||||||| Sbjct: 483 ttggttgtgcaatgctcagtctgcagatagcaaaacctttctacgtgcgctcttagcgaa 542 Query: 580 gacgacgtctatccagacggtcgcctgcattcccttgatgggtggtgtgcttgagct 636 || ||||||| ||||| | | |||||| ||||| ||| |||| ||||||||||| Sbjct: 543 gagcgcgtctattcagacaattgtctgcatccccttcatgagtggcgtgcttgagct 599
>ref|NM_001060066.1| Oryza sativa (japonica cultivar-group) Os04g0557500 (Os04g0557500) mRNA, partial cds Length = 1775 Score = 226 bits (114), Expect = 1e-55 Identities = 390/478 (81%), Gaps = 3/478 (0%) Strand = Plus / Plus Query: 161 gctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttcaaccagc 220 ||||| |||||||||||||||| |||||| ||| |||| || ||||||| ||||||||| Sbjct: 108 gctgctgctgtgaggagcatcagttggagttacaccatcttttggtccacttcaaccagt 167 Query: 221 cgtccaggggtactgacctggaaggacgggttctacaacggcgagataaagacgaggaag 280 | || || || ||||| ||||| || || ||||||||||||||| |||||||||||||| Sbjct: 168 ctcccgggagttctgacttggaacgatggattctacaacggcgaggtaaagacgaggaag 227 Query: 281 gtcaccagctcggcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctg 340 | ||| || | |||||||||||| ||||||||| |||||| ||| |||||||| ||| Sbjct: 228 atatccaacttagaggacctcaccgctgaccagctcgtcctgcggagaagcgagcaactg 287 Query: 341 cgggagctctaccagtccctcctgtccggccagtgcgaccaccgggggaggcgcccggcc 400 | ||||||||| | || |||||||||||| ||||||||||||||| ||| || | | Sbjct: 288 agcgagctctactactctctcctgtccggcgagtgcgaccaccgggcaaggaagcccgtc 347 Query: 401 gccgcgctctcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagc 460 ||||| || |||||||| || ||| |||| | ||||||||||||| |||||||||| | Sbjct: 348 gccgcactgtcgccggaagatatcgcggacacagaatggtactacgttgtctgcatgacc 407 Query: 461 tatgccttccgccctggccaagggttgccaggcagaagctttgcgagcaa-cgagcctgt 519 || ||||| || || ||||||||||| || |||||||||| ||| ||||| ||| |||| Sbjct: 408 tacgcctttcgacccggccaagggttacccggcagaagctatgcaagcaatcga-tctgt 466 Query: 520 ttggctgtgcaatgctcagtgcgcagacaccaaaac-tttccaacgctcgctcttagcga 578 |||| ||||||||||||||| ||||| | |||||| || | ||| |||||||||||| Sbjct: 467 ttggttgtgcaatgctcagtctgcagatagcaaaacactttctacgtgcgctcttagcga 526 Query: 579 agacgacgtctatccagacggtcgcctgcattcccttgatgggtggtgtgcttgagct 636 ||| ||||||| ||||| | | |||||| ||||| ||| |||| ||||||||||| Sbjct: 527 agagcgcgtctattcagacaattgtctgcatccccttcatgagtggcgtgcttgagct 584
>emb|X57276.1|ZMBPERU Z.mays B-Peru gene for a regulatory protein Length = 1970 Score = 194 bits (98), Expect = 4e-46 Identities = 310/380 (81%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 155 cagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttca 214 ||||| ||||| || | |||||||||||| |||||||| ||| | ||||||||||||||| Sbjct: 205 cagcttgctgcagccgcgaggagcatcaactggagctatgccctcttctggtccatttca 264 Query: 215 accagcc---gtccaggggtactgacctggaaggacgggttctacaacggcgagataaag 271 | || | | || |||| ||||| |||| ||||||||||||||| |||||| | ||| Sbjct: 265 agcactcaacgacctcgggtgctgacgtggacggacgggttctacaatggcgaggtgaag 324 Query: 272 acgaggaaggtcaccagctcggcggacctcaccgccgaccagctcctcctgcagaggagc 331 ||| | ||| || || ||| | ||| || || ||||||||||| ||| ||||||||||| Sbjct: 325 acgcgtaagatctcccactccgtggagctgacagccgaccagctgctcatgcagaggagc 384 Query: 332 gagcagctgcgggagctctaccagtccctcctgtccggccagtgcgaccaccgggggagg 391 |||||||| |||||||||||| || |||||| ||||||| ||||||||| ||| || | Sbjct: 385 gagcagctccgggagctctacgaggccctccggtccggcgagtgcgaccgccgcggcgcg 444 Query: 392 cgcccggccgccgcgctctcgccggaggacctcggggacgccgaatggtactacgccgtc 451 || |||| | | |||| ||||||||||||||||||||| |||| |||||||||| || Sbjct: 445 cggccggtgggctcgctgtcgccggaggacctcggggacaccgagtggtactacgtgatc 504 Query: 452 tgcatgagctatgccttccgccctggccaagggttgccaggcagaagctttgcgagcaac 511 ||||||| ||| ||||||| || |||||||| ||||| ||||| || | ||||||||| Sbjct: 505 tgcatgacctacgccttcctgccgggccaaggcttgcccggcaggagttccgcgagcaac 564 Query: 512 gagcctgtttggctgtgcaa 531 |||| ||| ||||||||||| Sbjct: 565 gagcatgtctggctgtgcaa 584
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 168 bits (85), Expect = 3e-38 Identities = 211/253 (83%) Strand = Plus / Minus Query: 233 ctgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcg 292 ||||| ||||||||||| |||||||||||||||||||||||||||||| |||| | ||| Sbjct: 27927435 ctgacttggaaggacggcttctacaacggcgagataaagacgaggaagatcacgaactcc 27927376 Query: 293 gcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctac 352 | |||||| |||||| |||| |||||||||| |||||||||||| ||||||||||| Sbjct: 27927375 atgaacctcatggccgacgagctggtcctgcagagaagcgagcagctgagggagctctac 27927316 Query: 353 cagtccctcctgtccggccagtgcgaccaccgggggaggcgcccggccgccgcgctctcg 412 | || ||||| |||||| |||||| |||||| | |||| | || | ||| || || | | Sbjct: 27927315 gactctctcctctccggcgagtgcggccaccgagcgaggaggcccgtcgctgcactgttg 27927256 Query: 413 ccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttccgc 472 ||||| || ||||||||| | ||||||||||||| ||||||||||| ||| |||||| || Sbjct: 27927255 ccggaagatctcggggacacggaatggtactacgtcgtctgcatgacctacgccttcggc 27927196 Query: 473 cctggccaagggt 485 || ||||||||| Sbjct: 27927195 ccccgccaagggt 27927183 Score = 145 bits (73), Expect = 4e-31 Identities = 208/253 (82%) Strand = Plus / Minus Query: 233 ctgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcg 292 ||||| ||||| || || ||||||||||||||| |||||||||||||| | ||| || Sbjct: 27905945 ctgacttggaacgatggattctacaacggcgaggtaaagacgaggaagatatccaactta 27905886 Query: 293 gcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctac 352 | |||||||||||| ||||||||| |||||| ||| |||||||| ||| | ||||||||| Sbjct: 27905885 gaggacctcaccgctgaccagctcgtcctgcggagaagcgagcaactgagcgagctctac 27905826 Query: 353 cagtccctcctgtccggccagtgcgaccaccgggggaggcgcccggccgccgcgctctcg 412 | || |||||||||||| ||||||||||||||| ||| || | |||||| || ||| Sbjct: 27905825 tactctctcctgtccggcgagtgcgaccaccgggcaaggaagcccgtcgccgcactgtcg 27905766 Query: 413 ccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttccgc 472 ||||| || ||| |||| | ||||||||||||| |||||||||| ||| ||||| || Sbjct: 27905765 ccggaagatatcgcggacacagaatggtactacgttgtctgcatgacctacgcctttcga 27905706 Query: 473 cctggccaagggt 485 || |||||||||| Sbjct: 27905705 cccggccaagggt 27905693 Score = 135 bits (68), Expect = 4e-28 Identities = 206/252 (81%) Strand = Plus / Minus Query: 234 tgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcgg 293 |||| ||||| || |||||||||||||||| | |||||||||||||| | ||| ||| | Sbjct: 27860227 tgacttggaatgatgggttctacaacggcgtggtaaagacgaggaagatatccaactcag 27860168 Query: 294 cggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctacc 353 | |||||||| || | |||||| || ||||||| |||||||| ||| ||||||| ||| Sbjct: 27860167 cagacctcacggctggtcagctcgtcgtgcagagaagcgagcaactgagggagctttact 27860108 Query: 354 agtccctcctgtccggccagtgcgaccaccgggggaggcgcccggccgccgcgctctcgc 413 | || |||||||||||| ||||||||||||||| |||| | || |||||||| |||| Sbjct: 27860107 actctctcctgtccggcgagtgcgaccaccgggcgaggaggcccattgccgcgctatcgc 27860048 Query: 414 cggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttccgcc 473 |||| || |||| ||| | ||||||||||||| ||||||||||| ||| |||||| | Sbjct: 27860047 cggaagatctcgcagacacagaatggtactacgtcgtctgcatgacctactccttccaac 27859988 Query: 474 ctggccaagggt 485 | |||||||||| Sbjct: 27859987 ccggccaagggt 27859976 Score = 79.8 bits (40), Expect = 2e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 154 ccagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttc 213 |||||| ||||| || | ||||||||||||||||| || |||||||| ||||||||||| Sbjct: 27927850 ccagcttgctgctgcagcgaggagcatcaattggacgtatgccatattttggtccatttc 27927791 Query: 214 aaccagccgtccaggg 229 ||||||||| |||||| Sbjct: 27927790 aaccagccgcccaggg 27927775 Score = 61.9 bits (31), Expect = 4e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 161 gctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttcaaccag 219 ||||| |||||||||||||||| |||||| || || || || ||||||||||||||||| Sbjct: 27862868 gctgctgctgtgaggagcatcagttggagttatgcgatcttttggtccatttcaaccag 27862810 Score = 61.9 bits (31), Expect = 4e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 161 gctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttcaaccag 219 ||||| |||||||||||||||| |||||| ||| |||| || ||||||| ||||||||| Sbjct: 27912529 gctgctgctgtgaggagcatcagttggagttacaccatcttttggtccacttcaaccag 27912471 Score = 54.0 bits (27), Expect = 0.001 Identities = 75/91 (82%) Strand = Plus / Minus Query: 486 tgccaggcagaagctttgcgagcaacgagcctgtttggctgtgcaatgctcagtgcgcag 545 ||||||||| ||||| ||| ||||| | ||||||||||| |||||||||||| |||| Sbjct: 27859723 tgccaggcaaaagctatgcaagcaatgcatctgtttggctgcgcaatgctcagtctgcag 27859664 Query: 546 acaccaaaactttccaacgctcgctcttagc 576 | | |||||| || | ||||||||| ||||| Sbjct: 27859663 atagcaaaacatttctacgctcgctattagc 27859633 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 297 acctcaccgccgaccagctcc 317 ||||||||||||||||||||| Sbjct: 23575643 acctcaccgccgaccagctcc 23575623
>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17, complete sequence Length = 167269 Score = 168 bits (85), Expect = 3e-38 Identities = 211/253 (83%) Strand = Plus / Minus Query: 233 ctgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcg 292 ||||| ||||||||||| |||||||||||||||||||||||||||||| |||| | ||| Sbjct: 90288 ctgacttggaaggacggcttctacaacggcgagataaagacgaggaagatcacgaactcc 90229 Query: 293 gcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctac 352 | |||||| |||||| |||| |||||||||| |||||||||||| ||||||||||| Sbjct: 90228 atgaacctcatggccgacgagctggtcctgcagagaagcgagcagctgagggagctctac 90169 Query: 353 cagtccctcctgtccggccagtgcgaccaccgggggaggcgcccggccgccgcgctctcg 412 | || ||||| |||||| |||||| |||||| | |||| | || | ||| || || | | Sbjct: 90168 gactctctcctctccggcgagtgcggccaccgagcgaggaggcccgtcgctgcactgttg 90109 Query: 413 ccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttccgc 472 ||||| || ||||||||| | ||||||||||||| ||||||||||| ||| |||||| || Sbjct: 90108 ccggaagatctcggggacacggaatggtactacgtcgtctgcatgacctacgccttcggc 90049 Query: 473 cctggccaagggt 485 || ||||||||| Sbjct: 90048 ccccgccaagggt 90036 Score = 145 bits (73), Expect = 4e-31 Identities = 208/253 (82%) Strand = Plus / Minus Query: 233 ctgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcg 292 ||||| ||||| || || ||||||||||||||| |||||||||||||| | ||| || Sbjct: 68798 ctgacttggaacgatggattctacaacggcgaggtaaagacgaggaagatatccaactta 68739 Query: 293 gcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctac 352 | |||||||||||| ||||||||| |||||| ||| |||||||| ||| | ||||||||| Sbjct: 68738 gaggacctcaccgctgaccagctcgtcctgcggagaagcgagcaactgagcgagctctac 68679 Query: 353 cagtccctcctgtccggccagtgcgaccaccgggggaggcgcccggccgccgcgctctcg 412 | || |||||||||||| ||||||||||||||| ||| || | |||||| || ||| Sbjct: 68678 tactctctcctgtccggcgagtgcgaccaccgggcaaggaagcccgtcgccgcactgtcg 68619 Query: 413 ccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttccgc 472 ||||| || ||| |||| | ||||||||||||| |||||||||| ||| ||||| || Sbjct: 68618 ccggaagatatcgcggacacagaatggtactacgttgtctgcatgacctacgcctttcga 68559 Query: 473 cctggccaagggt 485 || |||||||||| Sbjct: 68558 cccggccaagggt 68546 Score = 135 bits (68), Expect = 4e-28 Identities = 206/252 (81%) Strand = Plus / Minus Query: 234 tgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcgg 293 |||| ||||| || |||||||||||||||| | |||||||||||||| | ||| ||| | Sbjct: 23080 tgacttggaatgatgggttctacaacggcgtggtaaagacgaggaagatatccaactcag 23021 Query: 294 cggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctacc 353 | |||||||| || | |||||| || ||||||| |||||||| ||| ||||||| ||| Sbjct: 23020 cagacctcacggctggtcagctcgtcgtgcagagaagcgagcaactgagggagctttact 22961 Query: 354 agtccctcctgtccggccagtgcgaccaccgggggaggcgcccggccgccgcgctctcgc 413 | || |||||||||||| ||||||||||||||| |||| | || |||||||| |||| Sbjct: 22960 actctctcctgtccggcgagtgcgaccaccgggcgaggaggcccattgccgcgctatcgc 22901 Query: 414 cggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttccgcc 473 |||| || |||| ||| | ||||||||||||| ||||||||||| ||| |||||| | Sbjct: 22900 cggaagatctcgcagacacagaatggtactacgtcgtctgcatgacctactccttccaac 22841 Query: 474 ctggccaagggt 485 | |||||||||| Sbjct: 22840 ccggccaagggt 22829 Score = 79.8 bits (40), Expect = 2e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 154 ccagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttc 213 |||||| ||||| || | ||||||||||||||||| || |||||||| ||||||||||| Sbjct: 90703 ccagcttgctgctgcagcgaggagcatcaattggacgtatgccatattttggtccatttc 90644 Query: 214 aaccagccgtccaggg 229 ||||||||| |||||| Sbjct: 90643 aaccagccgcccaggg 90628 Score = 61.9 bits (31), Expect = 4e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 161 gctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttcaaccag 219 ||||| |||||||||||||||| |||||| || || || || ||||||||||||||||| Sbjct: 25721 gctgctgctgtgaggagcatcagttggagttatgcgatcttttggtccatttcaaccag 25663 Score = 61.9 bits (31), Expect = 4e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 161 gctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttcaaccag 219 ||||| |||||||||||||||| |||||| ||| |||| || ||||||| ||||||||| Sbjct: 75382 gctgctgctgtgaggagcatcagttggagttacaccatcttttggtccacttcaaccag 75324 Score = 54.0 bits (27), Expect = 0.001 Identities = 75/91 (82%) Strand = Plus / Minus Query: 486 tgccaggcagaagctttgcgagcaacgagcctgtttggctgtgcaatgctcagtgcgcag 545 ||||||||| ||||| ||| ||||| | ||||||||||| |||||||||||| |||| Sbjct: 22576 tgccaggcaaaagctatgcaagcaatgcatctgtttggctgcgcaatgctcagtctgcag 22517 Query: 546 acaccaaaactttccaacgctcgctcttagc 576 | | |||||| || | ||||||||| ||||| Sbjct: 22516 atagcaaaacatttctacgctcgctattagc 22486
>gb|AF466203.1| Zea mays clone ZMBBb_0092E12, partial sequence Length = 147198 Score = 163 bits (82), Expect = 2e-36 Identities = 214/258 (82%) Strand = Plus / Plus Query: 228 gggtactgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcacca 287 |||| ||||| |||| ||||||||||||||| |||||| | |||||| | ||| || || Sbjct: 23269 gggtgctgacgtggacggacgggttctacaatggcgaggtgaagacgcgtaagatctccc 23328 Query: 288 gctcggcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagc 347 ||| | ||| || || ||||||||||| ||| ||||||||||||||||||| ||||||| Sbjct: 23329 actccgtggagctgacagccgaccagctgctcatgcagaggagcgagcagctccgggagc 23388 Query: 348 tctaccagtccctcctgtccggccagtgcgaccaccgggggaggcgcccggccgccgcgc 407 ||||| || |||||| ||||||| ||||||||| ||| | | ||| |||| | | ||| Sbjct: 23389 tctacgaggccctccagtccggcgagtgcgaccgccgcgcggcgcggccggtgggctcgc 23448 Query: 408 tctcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgcct 467 | ||||||||||||||||||||| |||| |||||||||| ||||||||| ||| |||| Sbjct: 23449 tgtcgccggaggacctcggggacaccgagtggtactacgtgatctgcatgacctacgcct 23508 Query: 468 tccgccctggccaagggt 485 ||| ||||||||||||| Sbjct: 23509 tcctgcctggccaagggt 23526 Score = 50.1 bits (25), Expect = 0.016 Identities = 52/61 (85%) Strand = Plus / Plus Query: 155 cagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttca 214 ||||| ||||| || | |||||||||||| |||||||| || | ||||||||||||||| Sbjct: 22661 cagcttgctgcagccgcgaggagcatcaactggagctattccctcttctggtccatttca 22720 Query: 215 a 215 | Sbjct: 22721 a 22721 Score = 42.1 bits (21), Expect = 3.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 503 gcgagcaacgagcctgtttggctgtgcaa 531 ||||||||||||| ||| ||||||||||| Sbjct: 23628 gcgagcaacgagcatgtctggctgtgcaa 23656
>gb|AF326577.1|AF326577 Zea mays shadowspawn1 retrotransposon gag protein and anthocyanin regulatory B protein genes, partial cds Length = 4648 Score = 155 bits (78), Expect = 4e-34 Identities = 213/258 (82%) Strand = Plus / Plus Query: 228 gggtactgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcacca 287 |||| |||||||||| |||| |||||||||| |||||| | |||||| | ||| || || Sbjct: 3197 gggtgctgacctggacggacaggttctacaatggcgaggtgaagacgcgtaagatctccc 3256 Query: 288 gctcggcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagc 347 ||| | ||| || || ||||||||||| ||| ||||||||||||||||||| ||||||| Sbjct: 3257 actccgtggagctgacagccgaccagctgctcatgcagaggagcgagcagctccgggagc 3316 Query: 348 tctaccagtccctcctgtccggccagtgcgaccaccgggggaggcgcccggccgccgcgc 407 ||||| || |||||| ||||||| ||||||||| ||| | | ||| |||| | | ||| Sbjct: 3317 tctacgaggccctccagtccggcgagtgcgaccgccgcgcggcgcggccggtgggctcgc 3376 Query: 408 tctcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgcct 467 | ||||||||||||||||||||| |||| |||||||||| ||||||||| ||| |||| Sbjct: 3377 tgtcgccggaggacctcggggacaccgagtggtactacgtgatctgcatgacctacgcct 3436 Query: 468 tccgccctggccaagggt 485 ||| || |||||||||| Sbjct: 3437 tcctgccgggccaagggt 3454 Score = 58.0 bits (29), Expect = 7e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 155 cagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttca 214 ||||| ||||| || | |||||||||||| |||||||| ||| | ||||||||||||||| Sbjct: 2596 cagcttgctgcagccgcgaggagcatcaactggagctatgccctcttctggtccatttca 2655 Query: 215 a 215 | Sbjct: 2656 a 2656 Score = 42.1 bits (21), Expect = 3.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 503 gcgagcaacgagcctgtttggctgtgcaa 531 ||||||||||||| ||| ||||||||||| Sbjct: 3552 gcgagcaacgagcatgtctggctgtgcaa 3580
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 155 bits (78), Expect = 4e-34 Identities = 213/258 (82%) Strand = Plus / Plus Query: 228 gggtactgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcacca 287 |||| ||||| |||| ||||||||||||||||||||| | |||||||||||| || ||| Sbjct: 44871 gggtgctgacgtggactgacgggttctacaacggcgaggtgaagacgaggaagatctcca 44930 Query: 288 gctcggcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagc 347 ||| | ||| || || |||||||||||| | ||||||||||||||||||| ||||||| Sbjct: 44931 actctgtggagctgacagccgaccagctcgtgatgcagaggagcgagcagctccgggagc 44990 Query: 348 tctaccagtccctcctgtccggccagtgcgaccaccgggggaggcgcccggccgccgcgc 407 | ||| || |||||||||||||| ||||||||| ||| | ||| |||| || | || Sbjct: 44991 tgtacgaggccctcctgtccggcgagtgcgaccgccgcgccgcgcggccggtcggctcgt 45050 Query: 408 tctcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgcct 467 | ||||||||||||||||| ||| |||| |||||||| | |||||||||| ||| |||| Sbjct: 45051 tgtcgccggaggacctcggcgacaccgagtggtactatgtggtctgcatgacctacgcct 45110 Query: 468 tccgccctggccaagggt 485 ||| || |||||||||| Sbjct: 45111 tccagccaggccaagggt 45128 Score = 121 bits (61), Expect = 5e-24 Identities = 130/153 (84%) Strand = Plus / Plus Query: 228 gggtactgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcacca 287 |||| ||||| |||| |||||||||||||||||||||| | |||||||||||| || ||| Sbjct: 26412 gggtgctgacatggacggacgggttctacaacggcgaggtgaagacgaggaagatctcca 26471 Query: 288 gctcggcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagc 347 ||| | ||| | || |||||||||||| || ||||||| ||||||||||| ||||||| Sbjct: 26472 actccgtggagttgacagccgaccagctcgtcatgcagagaagcgagcagctccgggagc 26531 Query: 348 tctaccagtccctcctgtccggccagtgcgacc 380 | ||| | |||||||||||||| ||||||||| Sbjct: 26532 tgtacgaagccctcctgtccggcgagtgcgacc 26564 Score = 89.7 bits (45), Expect = 2e-14 Identities = 72/81 (88%) Strand = Plus / Plus Query: 405 cgctctcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatg 464 |||| ||||||||||||||||| ||| |||| |||||||||| | ||||||||| ||| | Sbjct: 26595 cgctgtcgccggaggacctcggcgacaccgagtggtactacgtcatctgcatgacctacg 26654 Query: 465 ccttccgccctggccaagggt 485 ||||||| ||||||||||||| Sbjct: 26655 ccttccggcctggccaagggt 26675 Score = 61.9 bits (31), Expect = 4e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 153 accagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccattt 212 ||||||| ||||| || | |||||||||||| |||||||| ||| | ||||||||||||| Sbjct: 21943 accagcttgctgcagccgcgaggagcatcaactggagctatgccctcttctggtccattt 22002 Query: 213 caa 215 ||| Sbjct: 22003 caa 22005 Score = 61.9 bits (31), Expect = 4e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 153 accagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccattt 212 ||||||||||||| || | |||||||||||| |||| ||| ||| | ||||||||||||| Sbjct: 42359 accagctcgctgcagccgcgaggagcatcaactggacctatgccctcttctggtccattt 42418 Query: 213 caa 215 ||| Sbjct: 42419 caa 42421 Score = 50.1 bits (25), Expect = 0.016 Identities = 43/49 (87%) Strand = Plus / Plus Query: 483 ggttgccaggcagaagctttgcgagcaacgagcctgtttggctgtgcaa 531 ||||||| ||||| || || ||||||||||||| ||| ||||||||||| Sbjct: 26750 ggttgccgggcaggagtttcgcgagcaacgagcatgtctggctgtgcaa 26798
>emb|X15806.1|ZMRS Maize anthocyanin regulatory R-S mRNA Length = 2309 Score = 151 bits (76), Expect = 6e-33 Identities = 175/208 (84%) Strand = Plus / Plus Query: 173 aggagcatcaattggagctacgccatattctggtccatttcaaccagccgtccaggggta 232 ||||||||||| |||||||||||| | ||||||||||||||| || | |||||||| Sbjct: 242 aggagcatcaactggagctacgccctcttctggtccatttcagacactcaaccaggggtg 301 Query: 233 ctgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcg 292 ||||| |||| |||||||||||||||||||||| | |||||| ||||| || ||| ||| Sbjct: 302 ctgacgtggacggacgggttctacaacggcgaggtgaagacgcggaagatctccaactcc 361 Query: 293 gcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctac 352 | ||| || || ||||||||||| || ||||||||||||| ||||| |||||||||||| Sbjct: 362 gtggagctgacatccgaccagctcgtcatgcagaggagcgaccagctccgggagctctac 421 Query: 353 cagtccctcctgtccggccagtgcgacc 380 || |||||||||| ||| || |||||| Sbjct: 422 gaggccctcctgtcgggcgagggcgacc 449 Score = 107 bits (54), Expect = 8e-20 Identities = 105/122 (86%) Strand = Plus / Plus Query: 410 tcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttc 469 ||||||||||||||||| ||| |||| |||||||||| |||| ||||| ||| |||||| Sbjct: 485 tcgccggaggacctcggcgacaccgagtggtactacgtggtctccatgacctacgccttc 544 Query: 470 cgccctggccaagggttgccaggcagaagctttgcgagcaacgagcctgtttggctgtgc 529 || || |||||||||||||| ||||| || || |||||| |||||| ||| ||||||||| Sbjct: 545 cggccaggccaagggttgcccggcaggagtttcgcgagcgacgagcatgtctggctgtgc 604 Query: 530 aa 531 || Sbjct: 605 aa 606
>emb|AJ251719.1|ZMA251719 Zea mays mRNA for transcription factor (hopi gene) Length = 2554 Score = 151 bits (76), Expect = 6e-33 Identities = 175/208 (84%) Strand = Plus / Plus Query: 173 aggagcatcaattggagctacgccatattctggtccatttcaaccagccgtccaggggta 232 ||||||||||| |||||||||||| | ||||||||||||||| || | |||||||| Sbjct: 475 aggagcatcaactggagctacgccctcttctggtccatttcagacactcaaccaggggtg 534 Query: 233 ctgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcg 292 ||||| |||| |||||||||||||||||||||| | |||||| ||||| || ||| ||| Sbjct: 535 ctgacgtggacggacgggttctacaacggcgaggtgaagacgcggaagatctccaactcc 594 Query: 293 gcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctac 352 | ||| || || ||||||||||| || ||||||||||||| ||||| |||||||||||| Sbjct: 595 gtggagctgacatccgaccagctcgtcatgcagaggagcgaccagctccgggagctctac 654 Query: 353 cagtccctcctgtccggccagtgcgacc 380 || |||||||||| ||| || |||||| Sbjct: 655 gaggccctcctgtcgggcgagggcgacc 682 Score = 121 bits (61), Expect = 5e-24 Identities = 118/137 (86%) Strand = Plus / Plus Query: 395 ccggccgccgcgctctcgccggaggacctcggggacgccgaatggtactacgccgtctgc 454 ||||||| | |||| ||||||||||||||||||||| |||| |||||||||| ||||| | Sbjct: 703 ccggccggctcgctgtcgccggaggacctcggggacaccgagtggtactacgtcgtctcc 762 Query: 455 atgagctatgccttccgccctggccaagggttgccaggcagaagctttgcgagcaacgag 514 |||| ||| |||||||| || |||||||||||||| ||||| || || || ||| ||||| Sbjct: 763 atgacctacgccttccggccaggccaagggttgcccggcaggagtttcgccagcgacgag 822 Query: 515 cctgtttggctgtgcaa 531 | ||| ||||||||||| Sbjct: 823 catgtctggctgtgcaa 839
>emb|X60706.1|ZMSN Maize SN mRNA, involved in tissue-specific anthocyanin expression Length = 2572 Score = 151 bits (76), Expect = 6e-33 Identities = 175/208 (84%) Strand = Plus / Plus Query: 173 aggagcatcaattggagctacgccatattctggtccatttcaaccagccgtccaggggta 232 ||||||||||| |||||||||||| | ||||||||||||||| || | |||||||| Sbjct: 478 aggagcatcaactggagctacgccctcttctggtccatttcagacactcaaccaggggtg 537 Query: 233 ctgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcg 292 ||||| |||| |||||||||||||||||||||| | |||||| ||||| || ||| ||| Sbjct: 538 ctgacgtggacggacgggttctacaacggcgaggtgaagacgcggaagatctccaactcc 597 Query: 293 gcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctac 352 | ||| || || ||||||||||| || ||||||||||||| ||||| |||||||||||| Sbjct: 598 gtggagctgacatccgaccagctcgtcatgcagaggagcgaccagctccgggagctctac 657 Query: 353 cagtccctcctgtccggccagtgcgacc 380 || |||||||||| ||| || |||||| Sbjct: 658 gaggccctcctgtcgggcgagggcgacc 685 Score = 107 bits (54), Expect = 8e-20 Identities = 105/122 (86%) Strand = Plus / Plus Query: 410 tcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttc 469 ||||||||||||||||| ||| |||| |||||||||| |||| ||||| ||| |||||| Sbjct: 721 tcgccggaggacctcggcgacaccgagtggtactacgtggtctccatgacctacgccttc 780 Query: 470 cgccctggccaagggttgccaggcagaagctttgcgagcaacgagcctgtttggctgtgc 529 || || |||||||||||||| ||||| || || |||||| |||||| ||| ||||||||| Sbjct: 781 cggccaggccaagggttgcccggcaggagtttcgcgagcgacgagcatgtctggctgtgc 840 Query: 530 aa 531 || Sbjct: 841 aa 842
>gb|M26227.1|MZEREGG Zea mays Lc regulatory protein mRNA, complete cds Length = 2605 Score = 151 bits (76), Expect = 6e-33 Identities = 175/208 (84%) Strand = Plus / Plus Query: 173 aggagcatcaattggagctacgccatattctggtccatttcaaccagccgtccaggggta 232 ||||||||||| |||||||||||| | ||||||||||||||| || | |||||||| Sbjct: 472 aggagcatcaactggagctacgccctcttctggtccatttcagacactcaaccaggggtg 531 Query: 233 ctgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcg 292 ||||| |||| |||||||||||||||||||||| | |||||| ||||| || ||| ||| Sbjct: 532 ctgacgtggacggacgggttctacaacggcgaggtgaagacgcggaagatctccaactcc 591 Query: 293 gcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctac 352 | ||| || || ||||||||||| || ||||||||||||| ||||| |||||||||||| Sbjct: 592 gtggagctgacatccgaccagctcgtcatgcagaggagcgaccagctccgggagctctac 651 Query: 353 cagtccctcctgtccggccagtgcgacc 380 || |||||||||| ||| || |||||| Sbjct: 652 gaggccctcctgtcgggcgagggcgacc 679 Score = 107 bits (54), Expect = 8e-20 Identities = 105/122 (86%) Strand = Plus / Plus Query: 410 tcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttc 469 ||||||||||||||||| ||| |||| |||||||||| |||| ||||| ||| |||||| Sbjct: 715 tcgccggaggacctcggcgacaccgagtggtactacgtggtctccatgacctacgccttc 774 Query: 470 cgccctggccaagggttgccaggcagaagctttgcgagcaacgagcctgtttggctgtgc 529 || || |||||||||||||| ||||| || || |||||| |||||| ||| ||||||||| Sbjct: 775 cggccaggccaagggttgcccggcaggagtttcgcgagcgacgagcatgtctggctgtgc 834 Query: 530 aa 531 || Sbjct: 835 aa 836
>gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062D09, complete sequence Length = 160244 Score = 143 bits (72), Expect = 1e-30 Identities = 207/252 (82%) Strand = Plus / Plus Query: 234 tgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcgg 293 |||| ||||||||||| ||||||||||| |||||||||||||||||| |||| ||||| Sbjct: 89478 tgacttggaaggacggcttctacaacggggagataaagacgaggaagatcacgagctcca 89537 Query: 294 cggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctacc 353 | ||||||| |||||| ||||| |||||||||| ||||||||||| ||||||||||| Sbjct: 89538 tgaacctcacggccgacgagctcgtcctgcagagaagcgagcagctaagggagctctacg 89597 Query: 354 agtccctcctgtccggccagtgcgaccaccgggggaggcgcccggccgccgcgctctcgc 413 | || ||| | |||||| |||| | |||||| | |||| | || | ||| ||||| |||| Sbjct: 89598 actctctcatctccggcgagtgtggccaccgagcgaggaggcccgtcgctgcgctgtcgc 89657 Query: 414 cggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttccgcc 473 |||| || ||||||||| | ||| ||||||| ||| ||||||| ||| |||||| | | Sbjct: 89658 cggaagatctcggggacacggaactgtactacctcgtttgcatgacctacgccttctgtc 89717 Query: 474 ctggccaagggt 485 | |||||||||| Sbjct: 89718 ccggccaagggt 89729 Score = 71.9 bits (36), Expect = 4e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 154 ccagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttc 213 |||||| ||||| || | ||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 86730 ccagcttgctgctgcagcgaggagcatcagttggacttatgccatattttggtccatttc 86789 Query: 214 aaccagccgtccaggg 229 ||||||| |||||||| Sbjct: 86790 aaccagctgtccaggg 86805
>gb|AY336078.1| Zea mays BHLH protein (r2k1) mRNA, complete cds Length = 1830 Score = 143 bits (72), Expect = 1e-30 Identities = 174/208 (83%) Strand = Plus / Plus Query: 173 aggagcatcaattggagctacgccatattctggtccatttcaaccagccgtccaggggta 232 ||||||||||| |||||||||||| | ||||||||||||||| || | |||||||| Sbjct: 97 aggagcatcaactggagctacgccctcttctggtccatttcagacactcaaccaggggtg 156 Query: 233 ctgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcg 292 ||||| ||| |||||||||||||||||||||| | |||||| ||||| || ||| ||| Sbjct: 157 ctgacgtgggcggacgggttctacaacggcgaggtgaagacgcggaagatctccaactcc 216 Query: 293 gcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctac 352 | ||| || || ||||||||||| || ||||||||||||| ||||| |||||||||||| Sbjct: 217 gtggagctgacatccgaccagctcgtcatgcagaggagcgaccagctccgggagctctac 276 Query: 353 cagtccctcctgtccggccagtgcgacc 380 || |||||||||| ||| || |||||| Sbjct: 277 gaggccctcctgtcgggcgagggcgacc 304 Score = 107 bits (54), Expect = 8e-20 Identities = 105/122 (86%) Strand = Plus / Plus Query: 410 tcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttc 469 ||||||||||||||||| ||| |||| |||||||||| |||| ||||| ||| |||||| Sbjct: 340 tcgccggaggacctcggcgacaccgagtggtactacgtggtctccatgacctacgccttc 399 Query: 470 cgccctggccaagggttgccaggcagaagctttgcgagcaacgagcctgtttggctgtgc 529 || || |||||||||||||| ||||| || || |||||| |||||| ||| ||||||||| Sbjct: 400 cggccaggccaagggttgcccggcaggagtttcgcgagcgacgagcatgtctggctgtgc 459 Query: 530 aa 531 || Sbjct: 460 aa 461
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 143 bits (72), Expect = 1e-30 Identities = 207/252 (82%) Strand = Plus / Minus Query: 234 tgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcgg 293 |||| ||||||||||| ||||||||||| |||||||||||||||||| |||| ||||| Sbjct: 8510093 tgacttggaaggacggcttctacaacggggagataaagacgaggaagatcacgagctcca 8510034 Query: 294 cggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctacc 353 | ||||||| |||||| ||||| |||||||||| ||||||||||| ||||||||||| Sbjct: 8510033 tgaacctcacggccgacgagctcgtcctgcagagaagcgagcagctaagggagctctacg 8509974 Query: 354 agtccctcctgtccggccagtgcgaccaccgggggaggcgcccggccgccgcgctctcgc 413 | || ||| | |||||| |||| | |||||| | |||| | || | ||| ||||| |||| Sbjct: 8509973 actctctcatctccggcgagtgtggccaccgagcgaggaggcccgtcgctgcgctgtcgc 8509914 Query: 414 cggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttccgcc 473 |||| || ||||||||| | ||| ||||||| ||| ||||||| ||| |||||| | | Sbjct: 8509913 cggaagatctcggggacacggaactgtactacctcgtttgcatgacctacgccttctgtc 8509854 Query: 474 ctggccaagggt 485 | |||||||||| Sbjct: 8509853 ccggccaagggt 8509842 Score = 71.9 bits (36), Expect = 4e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 154 ccagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttc 213 |||||| ||||| || | ||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 8512841 ccagcttgctgctgcagcgaggagcatcagttggacttatgccatattttggtccatttc 8512782 Query: 214 aaccagccgtccaggg 229 ||||||| |||||||| Sbjct: 8512781 aaccagctgtccaggg 8512766
>emb|CR855198.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0137D06, complete sequence Length = 82142 Score = 135 bits (68), Expect = 4e-28 Identities = 206/252 (81%) Strand = Plus / Minus Query: 234 tgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcgg 293 |||| ||||| || |||||||||||||||| | |||||||||||||| | ||| ||| | Sbjct: 40935 tgacttggaatgatgggttctacaacggcgtggtaaagacgaggaagatatccaactcag 40876 Query: 294 cggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagctctacc 353 | |||||||| || | |||||| || ||||||| |||||||| ||| ||||||| ||| Sbjct: 40875 cagacctcacggctggtcagctcgtcgtgcagagaagcgagcaactgagggagctttact 40816 Query: 354 agtccctcctgtccggccagtgcgaccaccgggggaggcgcccggccgccgcgctctcgc 413 | || |||||||||||| ||||||||||||||| |||| | || |||||||| |||| Sbjct: 40815 actctctcctgtccggcgagtgcgaccaccgggcgaggaggcccattgccgcgctatcgc 40756 Query: 414 cggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttccgcc 473 |||| || |||| ||| | ||||||||||||| ||||||||||| ||| |||||| | Sbjct: 40755 cggaagatctcgcagacacagaatggtactacgtcgtctgcatgacctactccttccaac 40696 Query: 474 ctggccaagggt 485 | |||||||||| Sbjct: 40695 ccggccaagggt 40684 Score = 61.9 bits (31), Expect = 4e-06 Identities = 79/95 (83%) Strand = Plus / Minus Query: 486 tgccaggcagaagctttgcgagcaacgagcctgtttggctgtgcaatgctcagtgcgcag 545 ||||||||| ||||| ||| ||||| | ||||||||||| |||||||||||| |||| Sbjct: 40431 tgccaggcaaaagctatgcaagcaatgcatctgtttggctgcgcaatgctcagtctgcag 40372 Query: 546 acaccaaaactttccaacgctcgctcttagcgaag 580 | | |||||| || | ||||||||| ||||||||| Sbjct: 40371 atagcaaaacatttctacgctcgctattagcgaag 40337 Score = 54.0 bits (27), Expect = 0.001 Identities = 48/55 (87%) Strand = Plus / Minus Query: 161 gctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttcaa 215 ||||| |||||||||||||||| |||||| || || || || ||||||||||||| Sbjct: 43578 gctgctgctgtgaggagcatcagttggagttatgcgatcttttggtccatttcaa 43524 Score = 50.1 bits (25), Expect = 0.016 Identities = 55/65 (84%) Strand = Plus / Minus Query: 516 ctgtttggctgtgcaatgctcagtgcgcagacaccaaaactttccaacgctcgctcttag 575 |||||||| ||||||||||||||| ||||| | |||||| || | ||| ||||||||| Sbjct: 81619 ctgtttggttgtgcaatgctcagtctgcagatagcaaaacctttctacgtgcgctcttag 81560 Query: 576 cgaag 580 ||||| Sbjct: 81559 cgaag 81555
>gb|DQ414252.1| Zea mays anthocyanin regulatory LC protein (lc1) gene, complete cds Length = 9539 Score = 113 bits (57), Expect = 1e-21 Identities = 129/153 (84%) Strand = Plus / Plus Query: 228 gggtactgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcacca 287 |||| ||||| |||| |||||||||||||||||||||| | |||||| ||||| || ||| Sbjct: 6267 gggtgctgacgtggacggacgggttctacaacggcgaggtgaagacgcggaagatctcca 6326 Query: 288 gctcggcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagc 347 ||| | ||| || || ||||||||||| || ||||||||||||| ||||| ||||||| Sbjct: 6327 actccgtggagctgacatccgaccagctcgtcatgcagaggagcgaccagctccgggagc 6386 Query: 348 tctaccagtccctcctgtccggccagtgcgacc 380 ||||| || |||||||||| ||| || |||||| Sbjct: 6387 tctacgaggccctcctgtcgggcgagggcgacc 6419 Score = 71.9 bits (36), Expect = 4e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 410 tcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttc 469 ||||||||||||||||| ||| |||| |||||||||| |||| ||||| ||| |||||| Sbjct: 6455 tcgccggaggacctcggcgacaccgagtggtactacgtggtctccatgacctacgccttc 6514 Query: 470 cgccctggccaagggt 485 || || |||||||||| Sbjct: 6515 cggccaggccaagggt 6530 Score = 60.0 bits (30), Expect = 2e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 173 aggagcatcaattggagctacgccatattctggtccatttca 214 ||||||||||| |||||||||||| | ||||||||||||||| Sbjct: 1970 aggagcatcaactggagctacgccctcttctggtccatttca 2011 Score = 42.1 bits (21), Expect = 3.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 483 ggttgccaggcagaagctttgcgagcaacgagcctgtttggctgtgcaa 531 ||||||| ||||| || || |||||| |||||| ||| ||||||||||| Sbjct: 6656 ggttgcccggcaggagtttcgcgagcgacgagcatgtctggctgtgcaa 6704
>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol precursor -orf2, putative Fourf gag/pol protein, putative NADP-dependent malic enzyme, putative argonaute protein, putative pinhead protein, putative pol protein, putative gag protein, putative TNP2, r1-B73 proteins, putative genetic modifier, putative S-receptor kinase, putative aldose reductase-related protein, putative glutathione peroxidase, putative glycerol 3-phosphate permease, putative response regulator, and putative 4-coumarate-CoA ligase-like protein genes, complete cds Length = 290350 Score = 97.6 bits (49), Expect = 8e-17 Identities = 127/153 (83%) Strand = Plus / Plus Query: 228 gggtactgacctggaaggacgggttctacaacggcgagataaagacgaggaaggtcacca 287 |||| ||||| |||| |||||||||||||||||||||| | |||||| ||||| || ||| Sbjct: 74601 gggtgctgacgtggacggacgggttctacaacggcgaggtgaagacgcggaagatctcca 74660 Query: 288 gctcggcggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagc 347 ||| | ||| || || ||||||| ||| || ||||||||||||| ||||| ||||||| Sbjct: 74661 actccgtggagctgacatccgaccacctcgtcatgcagaggagcgaccagctccgggagc 74720 Query: 348 tctaccagtccctcctgtccggccagtgcgacc 380 ||||| || |||| ||||| ||| || |||||| Sbjct: 74721 tctacgaggccctgctgtcgggcgagggcgacc 74753 Score = 77.8 bits (39), Expect = 7e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 395 ccggccgccgcgctctcgccggaggacctcggggacgccgaatggtactacgccgtctgc 454 ||||||| | |||| ||||||||||||||||||||| |||| ||||| |||| |||| | Sbjct: 74774 ccggccggctcgctgtcgccggaggacctcggggacaccgagtggtattacgtggtctcc 74833 Query: 455 atgagctatgccttccgccctggccaagggt 485 |||| ||| |||||||| || |||||||||| Sbjct: 74834 atgacctacgccttccggccaggccaagggt 74864 Score = 60.0 bits (30), Expect = 2e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 173 aggagcatcaattggagctacgccatattctggtccatttca 214 ||||||||||| |||||||||||| | ||||||||||||||| Sbjct: 68755 aggagcatcaactggagctacgccctcttctggtccatttca 68796 Score = 42.1 bits (21), Expect = 3.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 483 ggttgccaggcagaagctttgcgagcaacgagcctgtttggctgtgcaa 531 ||||||| ||||| || || |||||| |||||| ||| ||||||||||| Sbjct: 74976 ggttgcccggcaggagtttcgcgagcgacgagcatgtctggctgtgcaa 75024
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 77.8 bits (39), Expect = 7e-11 Identities = 95/113 (84%), Gaps = 3/113 (2%) Strand = Plus / Plus Query: 239 tggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcggc---g 295 ||||||||||||||||||||||||||| | |||||||||||| | ||| ||| | | Sbjct: 22213702 tggaaggacgggttctacaacggcgaggttaagacgaggaagataggcagttcgacgatg 22213761 Query: 296 gacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagct 348 || ||||| || || ||||||||||||||||| |||||||| ||| ||||||| Sbjct: 22213762 gagctcacggctgagcagctcctcctgcagagaagcgagcaactgagggagct 22213814 Score = 71.9 bits (36), Expect = 4e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 233 ctgacctggaaggacgggttctacaacggcgagataaagacgaggaag 280 ||||| ||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 22299849 ctgacatggaatgacgggttctacaacggcgagataaagacaaggaag 22299896 Score = 63.9 bits (32), Expect = 1e-06 Identities = 74/88 (84%) Strand = Plus / Plus Query: 142 gcaattcagctaccagctcgctgccgctgtgaggagcatcaattggagctacgccatatt 201 ||||||||| | ||||| ||||| || ||||||||||||| ||||| ||| ||||| || Sbjct: 22211756 gcaattcaggaagcagcttgctgctgccgtgaggagcatcagttggacctatgccatctt 22211815 Query: 202 ctggtccatttcaaccagccgtccaggg 229 |||||||||||||| | ||||||||| Sbjct: 22211816 ttggtccatttcaactactcgtccaggg 22211843 Score = 63.9 bits (32), Expect = 1e-06 Identities = 74/88 (84%) Strand = Plus / Plus Query: 142 gcaattcagctaccagctcgctgccgctgtgaggagcatcaattggagctacgccatatt 201 ||||||||| | ||||| ||||| || ||||||||||||| ||||| ||| ||||| || Sbjct: 22297396 gcaattcaggaagcagcttgctgctgccgtgaggagcatcagttggacctatgccatctt 22297455 Query: 202 ctggtccatttcaaccagccgtccaggg 229 |||||||||||||| | ||||||||| Sbjct: 22297456 ttggtccatttcaactactcgtccaggg 22297483 Score = 63.9 bits (32), Expect = 1e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 410 tcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttc 469 ||||||||||| ||||| ||| ||||||||||||| |||||||||| ||| |||||| Sbjct: 22300035 tcgccggaggatctcggcaacgtagaatggtactacgttgtctgcatgacctacgccttc 22300094 Query: 470 cgccctgg 477 |||||||| Sbjct: 22300095 cgccctgg 22300102 Score = 46.1 bits (23), Expect = 0.25 Identities = 47/55 (85%) Strand = Plus / Plus Query: 294 cggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagct 348 |||| ||||| || || ||||||||||| ||||| |||||||| ||| ||||||| Sbjct: 22299916 cggagctcacagctgagcagctcctcctacagagaagcgagcaactgagggagct 22299970
>dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1112D09 Length = 125920 Score = 77.8 bits (39), Expect = 7e-11 Identities = 95/113 (84%), Gaps = 3/113 (2%) Strand = Plus / Plus Query: 239 tggaaggacgggttctacaacggcgagataaagacgaggaaggtcaccagctcggc---g 295 ||||||||||||||||||||||||||| | |||||||||||| | ||| ||| | | Sbjct: 109188 tggaaggacgggttctacaacggcgaggttaagacgaggaagataggcagttcgacgatg 109247 Query: 296 gacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagct 348 || ||||| || || ||||||||||||||||| |||||||| ||| ||||||| Sbjct: 109248 gagctcacggctgagcagctcctcctgcagagaagcgagcaactgagggagct 109300 Score = 63.9 bits (32), Expect = 1e-06 Identities = 74/88 (84%) Strand = Plus / Plus Query: 142 gcaattcagctaccagctcgctgccgctgtgaggagcatcaattggagctacgccatatt 201 ||||||||| | ||||| ||||| || ||||||||||||| ||||| ||| ||||| || Sbjct: 107242 gcaattcaggaagcagcttgctgctgccgtgaggagcatcagttggacctatgccatctt 107301 Query: 202 ctggtccatttcaaccagccgtccaggg 229 |||||||||||||| | ||||||||| Sbjct: 107302 ttggtccatttcaactactcgtccaggg 107329
>dbj|AP003310.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0022F12 Length = 137716 Score = 71.9 bits (36), Expect = 4e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 233 ctgacctggaaggacgggttctacaacggcgagataaagacgaggaag 280 ||||| ||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 82328 ctgacatggaatgacgggttctacaacggcgagataaagacaaggaag 82375 Score = 63.9 bits (32), Expect = 1e-06 Identities = 74/88 (84%) Strand = Plus / Plus Query: 142 gcaattcagctaccagctcgctgccgctgtgaggagcatcaattggagctacgccatatt 201 ||||||||| | ||||| ||||| || ||||||||||||| ||||| ||| ||||| || Sbjct: 79875 gcaattcaggaagcagcttgctgctgccgtgaggagcatcagttggacctatgccatctt 79934 Query: 202 ctggtccatttcaaccagccgtccaggg 229 |||||||||||||| | ||||||||| Sbjct: 79935 ttggtccatttcaactactcgtccaggg 79962 Score = 63.9 bits (32), Expect = 1e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 410 tcgccggaggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttc 469 ||||||||||| ||||| ||| ||||||||||||| |||||||||| ||| |||||| Sbjct: 82514 tcgccggaggatctcggcaacgtagaatggtactacgttgtctgcatgacctacgccttc 82573 Query: 470 cgccctgg 477 |||||||| Sbjct: 82574 cgccctgg 82581 Score = 46.1 bits (23), Expect = 0.25 Identities = 47/55 (85%) Strand = Plus / Plus Query: 294 cggacctcaccgccgaccagctcctcctgcagaggagcgagcagctgcgggagct 348 |||| ||||| || || ||||||||||| ||||| |||||||| ||| ||||||| Sbjct: 82395 cggagctcacagctgagcagctcctcctacagagaagcgagcaactgagggagct 82449
>emb|X70791.1|ZMBPERUA Zea mays B-Peru gene for B transcriptional activator Length = 2662 Score = 58.0 bits (29), Expect = 7e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 155 cagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttca 214 ||||| ||||| || | |||||||||||| |||||||| ||| | ||||||||||||||| Sbjct: 2409 cagcttgctgcagccgcgaggagcatcaactggagctatgccctcttctggtccatttca 2468 Query: 215 a 215 | Sbjct: 2469 a 2469
>emb|X73300.1|ZMFBPERUM Z.mays sequence flanking tandem duplication b-Perum220 Length = 438 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 418 ggacctcggggacgccgaatggtactacgccgtctgcatgagctatgccttccgccctgg 477 ||||||||||||| |||| |||||||||| ||||||||| ||| ||||||| || || Sbjct: 1 ggacctcggggacaccgagtggtactacgtgatctgcatgacctacgccttcctgccggg 60 Query: 478 ccaagggt 485 |||||||| Sbjct: 61 ccaagggt 68
>gb|U93178.1|ZMU93178 Zea mays helix-loop-helix type transcription factor R (R-d:Catspaw allele) gene, exon 1, inverted repeat, partial cds Length = 4279 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 175 gagcatcaattggagctacgccatattctggtccatttca 214 ||||||||| |||||||||||| | ||||||||||||||| Sbjct: 1733 gagcatcaactggagctacgccctcttctggtccatttca 1694 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 175 gagcatcaattggagctacgccatattctggtccatttca 214 ||||||||| |||||||||||| | ||||||||||||||| Sbjct: 2547 gagcatcaactggagctacgccctcttctggtccatttca 2586
>gb|AY078063.2| Zea mays B transcriptional activator (b1) gene, b1-B' allele, exons 1 through 3 and partial cds Length = 107840 Score = 50.1 bits (25), Expect = 0.016 Identities = 52/61 (85%) Strand = Plus / Minus Query: 155 cagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttca 214 ||||| ||||| || | |||||||||||| |||||||| || | ||||||||||||||| Sbjct: 658 cagcttgctgcagccgcgaggagcatcaactggagctattccctcttctggtccatttca 599 Query: 215 a 215 | Sbjct: 598 a 598 Score = 46.1 bits (23), Expect = 0.25 Identities = 41/47 (87%) Strand = Plus / Minus Query: 228 gggtactgacctggaaggacgggttctacaacggcgagataaagacg 274 |||| ||||| |||| ||||||||||||||| |||||| | |||||| Sbjct: 50 gggtgctgacgtggacggacgggttctacaatggcgaggtgaagacg 4
>emb|X70790.1|ZMBIAA Z.mays B-I gene for B transcriptional activator Length = 2220 Score = 50.1 bits (25), Expect = 0.016 Identities = 52/61 (85%) Strand = Plus / Plus Query: 155 cagctcgctgccgctgtgaggagcatcaattggagctacgccatattctggtccatttca 214 ||||| ||||| || | |||||||||||| |||||||| || | ||||||||||||||| Sbjct: 2019 cagcttgctgcagccgcgaggagcatcaactggagctattccctcttctggtccatttca 2078 Query: 215 a 215 | Sbjct: 2079 a 2079
>ref|XM_417626.2| PREDICTED: Gallus gallus zinc finger, UBR1 type 1 (ZUBR1), mRNA Length = 15981 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 gcgagcagctgcgggagctct 350 ||||||||||||||||||||| Sbjct: 221 gcgagcagctgcgggagctct 201
>ref|NM_001059594.1| Oryza sativa (japonica cultivar-group) Os04g0472200 (Os04g0472200) mRNA, complete cds Length = 1166 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 acctcaccgccgaccagctcc 317 ||||||||||||||||||||| Sbjct: 395 acctcaccgccgaccagctcc 415
>ref|NM_001057949.1| Oryza sativa (japonica cultivar-group) Os03g0773000 (Os03g0773000) mRNA, complete cds Length = 1734 Score = 42.1 bits (21), Expect = 3.9 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 387 ggaggcgcccg-gccgccgcgctctcgcc 414 ||||||||||| ||||||||||||||||| Sbjct: 1029 ggaggcgcccgcgccgccgcgctctcgcc 1001
>gb|AC161261.5| Mus musculus BAC clone RP23-376D23 from chromosome 17, complete sequence Length = 190041 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 794 tacaggatttttacaggcaaa 814 ||||||||||||||||||||| Sbjct: 84102 tacaggatttttacaggcaaa 84082
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 42.1 bits (21), Expect = 3.9 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 387 ggaggcgcccg-gccgccgcgctctcgcc 414 ||||||||||| ||||||||||||||||| Sbjct: 50153 ggaggcgcccgcgccgccgcgctctcgcc 50181
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 ggacctcaccgccgaccagct 315 ||||||||||||||||||||| Sbjct: 1370693 ggacctcaccgccgaccagct 1370713
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete sequence Length = 162339 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 gccgccgcgctctcgccggag 418 ||||||||||||||||||||| Sbjct: 102760 gccgccgcgctctcgccggag 102740
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 gccgccgcgctctcgccggag 418 ||||||||||||||||||||| Sbjct: 16758243 gccgccgcgctctcgccggag 16758223
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 3.9 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 387 ggaggcgcccg-gccgccgcgctctcgcc 414 ||||||||||| ||||||||||||||||| Sbjct: 31815443 ggaggcgcccgcgccgccgcgctctcgcc 31815471
>gb|AC125145.3| Mus musculus BAC clone RP24-347B7 from chromosome 6, complete sequence Length = 186598 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 988 ttattctagtgtgttattttt 1008 ||||||||||||||||||||| Sbjct: 33567 ttattctagtgtgttattttt 33547
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 297 acctcaccgccgaccagctcc 317 ||||||||||||||||||||| Sbjct: 18324 acctcaccgccgaccagctcc 18304
>dbj|AK110545.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-B08, full insert sequence Length = 1166 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 acctcaccgccgaccagctcc 317 ||||||||||||||||||||| Sbjct: 395 acctcaccgccgaccagctcc 415
>dbj|AK100695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114I22, full insert sequence Length = 1734 Score = 42.1 bits (21), Expect = 3.9 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 387 ggaggcgcccg-gccgccgcgctctcgcc 414 ||||||||||| ||||||||||||||||| Sbjct: 1030 ggaggcgcccgcgccgccgcgctctcgcc 1002
>emb|AJ007709.1|GHY7709 Gerbera hybrid cv. 'Terra Regina' mRNA for bHLH transcription factor Length = 2268 Score = 42.1 bits (21), Expect = 3.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 176 agcatcaattggagctacgccatattctggtccatttcaac 216 |||||| | |||||||| || || ||||||||||||||||| Sbjct: 349 agcatccaatggagctatgctatcttctggtccatttcaac 389
>gb|AC147371.4| Mus musculus BAC clone RP24-247D2 from 6, complete sequence Length = 178577 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 988 ttattctagtgtgttattttt 1008 ||||||||||||||||||||| Sbjct: 25547 ttattctagtgtgttattttt 25527
>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence Length = 139298 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 297 acctcaccgccgaccagctcc 317 ||||||||||||||||||||| Sbjct: 131546 acctcaccgccgaccagctcc 131526
>emb|AL627252.16| Mouse DNA sequence from clone RP23-272P17 on chromosome 11, complete sequence Length = 137878 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 510 acgagcctgtttggctgtgca 530 ||||||||||||||||||||| Sbjct: 45359 acgagcctgtttggctgtgca 45339 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 171,214,860 Number of extensions: 8950789 Number of successful extensions: 183194 Number of sequences better than 10.0: 48 Number of HSP's gapped: 183162 Number of HSP's successfully gapped: 105 Length of query: 1038 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1015 Effective length of database: 18,503,978,556 Effective search space: 18781538234340 Effective search space used: 18781538234340 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
