ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf42i20 |
|---|---|
| Clone Library Name | barley_pub |
>Q5F457:WBP4_CHICK WW domain-binding protein 4 - Gallus gallus (Chicken)| Length = 398 Score = 58.5 bits (140), Expect = 5e-08 Identities = 29/81 (35%), Positives = 42/81 (51%) Frame = +2 Query: 170 MTEYWVSQGNKWCDLCKIFISNNPFSIRTHELGKRHKDNVTQRLSTMQKDGXXXXXXXXX 349 M +YW SQ K+CD CK +I++N SI HE GK HK+NV +R+S ++K Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSIDFHERGKNHKENVAKRISEIRKKSMEKAKEEEN 60 Query: 350 XXXXXXXXXXXXXXSYQKDLE 412 +YQ+DL+ Sbjct: 61 MSKEFAAMEEAAMKAYQEDLK 81
>Q61048:WBP4_MOUSE WW domain-binding protein 4 - Mus musculus (Mouse)| Length = 376 Score = 57.4 bits (137), Expect = 1e-07 Identities = 27/81 (33%), Positives = 42/81 (51%) Frame = +2 Query: 170 MTEYWVSQGNKWCDLCKIFISNNPFSIRTHELGKRHKDNVTQRLSTMQKDGXXXXXXXXX 349 M +YW SQ K+CD CK +I++N S+ HE GK HK+NV +R+S +++ Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARRISEIKQKSLDKAKEEEK 60 Query: 350 XXXXXXXXXXXXXXSYQKDLE 412 +YQ+DL+ Sbjct: 61 ASKEFAAMEAAALKAYQEDLK 81
>O75554:WBP4_HUMAN WW domain-binding protein 4 - Homo sapiens (Human)| Length = 376 Score = 57.4 bits (137), Expect = 1e-07 Identities = 27/81 (33%), Positives = 42/81 (51%) Frame = +2 Query: 170 MTEYWVSQGNKWCDLCKIFISNNPFSIRTHELGKRHKDNVTQRLSTMQKDGXXXXXXXXX 349 M +YW SQ K+CD CK +I++N S+ HE GK HK+NV +R+S +++ Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEK 60 Query: 350 XXXXXXXXXXXXXXSYQKDLE 412 +YQ+DL+ Sbjct: 61 ASKEFAAMEAAALKAYQEDLK 81
>Q5HZF2:WBP4_RAT WW domain-binding protein 4 - Rattus norvegicus (Rat)| Length = 374 Score = 56.2 bits (134), Expect = 2e-07 Identities = 26/81 (32%), Positives = 42/81 (51%) Frame = +2 Query: 170 MTEYWVSQGNKWCDLCKIFISNNPFSIRTHELGKRHKDNVTQRLSTMQKDGXXXXXXXXX 349 M +YW SQ K+CD CK +I++N S+ HE GK HK+NV +++S +++ Sbjct: 1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARKISEIKQKSLDKAKEEEK 60 Query: 350 XXXXXXXXXXXXXXSYQKDLE 412 +YQ+DL+ Sbjct: 61 ASKEFAAMEAAALKAYQEDLK 81
>Q91YE7:RBM5_MOUSE RNA-binding protein 5 - Mus musculus (Mouse)| Length = 815 Score = 50.8 bits (120), Expect = 1e-05 Identities = 26/60 (43%), Positives = 35/60 (58%) Frame = +2 Query: 470 FDSTSGYYYDKSTGLYYDSNSGFYYSDGLGKWVTQEEAYKWAETSETNVAQSSTSQPKPT 649 +D +SGYYYD +TGLYYD NS +YY+ +TQ+ Y W ET V + S + T Sbjct: 464 YDESSGYYYDPTTGLYYDPNSQYYYNS-----LTQQYLY-WDGEKETYVPAAEASSNQQT 517 Score = 32.3 bits (72), Expect = 3.9 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +2 Query: 461 GWVFDSTSGYYYDKSTGLYYDS-NSGFYYSDGLGK-WVTQEEAYKWAETSETNVAQSSTS 634 G+ +D T+G YYD ++ YY+S + Y DG + +V EA +T + + Sbjct: 469 GYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAEASSNQQTGLPSTKEGKEK 528 Query: 635 QPKP 646 + KP Sbjct: 529 KEKP 532
>P52756:RBM5_HUMAN RNA-binding protein 5 - Homo sapiens (Human)| Length = 815 Score = 50.8 bits (120), Expect = 1e-05 Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 2/58 (3%) Frame = +2 Query: 470 FDSTSGYYYDKSTGLYYDSNSGFYYSDGLGKWVTQEEAYKWAETSETNV--AQSSTSQ 637 +D +SGYYYD +TGLYYD NS +YY+ +TQ+ Y W ET V A+SS+ Q Sbjct: 464 YDESSGYYYDPTTGLYYDPNSQYYYNS-----LTQQYLY-WDGEKETYVPAAESSSHQ 515
>Q1RMU5:RBM5_BOVIN RNA-binding protein 5 - Bos taurus (Bovine)| Length = 815 Score = 48.9 bits (115), Expect = 4e-05 Identities = 24/60 (40%), Positives = 36/60 (60%) Frame = +2 Query: 470 FDSTSGYYYDKSTGLYYDSNSGFYYSDGLGKWVTQEEAYKWAETSETNVAQSSTSQPKPT 649 +D +SGYYYD +TGLYYD NS +YY+ +TQ+ Y W ET + + ++ + T Sbjct: 464 YDESSGYYYDPTTGLYYDPNSQYYYNS-----LTQQYLY-WDGEKETYMLAAESNSHQQT 517 Score = 31.6 bits (70), Expect = 6.6 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +2 Query: 461 GWVFDSTSGYYYDKSTGLYYDSNSGFYYSDGLGKWVTQEEAYKWAETSETN 613 G+ +D T+G YYD ++ YY+S + Y W ++E Y A S ++ Sbjct: 469 GYYYDPTTGLYYDPNSQYYYNSLTQQYL-----YWDGEKETYMLAAESNSH 514
>P70501:RBM10_RAT RNA-binding protein 10 - Rattus norvegicus (Rat)| Length = 852 Score = 47.0 bits (110), Expect = 2e-04 Identities = 18/26 (69%), Positives = 21/26 (80%) Frame = +2 Query: 470 FDSTSGYYYDKSTGLYYDSNSGFYYS 547 +D TSGYYYD TGLYYD NS +YY+ Sbjct: 496 YDETSGYYYDPQTGLYYDPNSQYYYN 521 Score = 31.2 bits (69), Expect = 8.6 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 482 SGYYYDKSTGLYYDSNSGFYY 544 S Y YD+++G YYD +G YY Sbjct: 492 STYQYDETSGYYYDPQTGLYY 512
>P98175:RBM10_HUMAN RNA-binding protein 10 - Homo sapiens (Human)| Length = 929 Score = 47.0 bits (110), Expect = 2e-04 Identities = 18/26 (69%), Positives = 21/26 (80%) Frame = +2 Query: 470 FDSTSGYYYDKSTGLYYDSNSGFYYS 547 +D TSGYYYD TGLYYD NS +YY+ Sbjct: 573 YDETSGYYYDPQTGLYYDPNSQYYYN 598 Score = 31.2 bits (69), Expect = 8.6 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 482 SGYYYDKSTGLYYDSNSGFYY 544 S Y YD+++G YYD +G YY Sbjct: 569 STYQYDETSGYYYDPQTGLYY 589
>Q7TN31:AGGF1_MOUSE Angiogenic factor with G patch and FHA domains 1 - Mus musculus| (Mouse) Length = 711 Score = 43.9 bits (102), Expect = 0.001 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +2 Query: 443 SAAPGEGWVFDSTSGYYYDKSTGLYYDSNSGFYYSDGLG-KWVTQEEAYKWAETSETNVA 619 +A G+ +D ++G Y+D STG YYDS + YY G + E+ ++ S ++ Sbjct: 200 AAVSQTGFTYDESTGLYFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRYQFHSRVDLQ 259 Query: 620 QSSTSQPKP 646 TS KP Sbjct: 260 PYQTSSTKP 268
>Q8N302:AGGF1_HUMAN Angiogenic factor with G patch and FHA domains 1 - Homo sapiens| (Human) Length = 714 Score = 40.0 bits (92), Expect = 0.018 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +2 Query: 443 SAAPGEGWVFDSTSGYYYDKSTGLYYDSNSGFYYSDGLG 559 +A G+ +D +G Y+D STG YYDS + YY G Sbjct: 200 AAVSQTGFSYDENTGLYFDHSTGFYYDSENQLYYDPSTG 238 Score = 38.5 bits (88), Expect = 0.054 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +2 Query: 461 GWVFDSTSGYYYDKSTGLYYDSNSGFYY 544 G FD ++G+YYD LYYD ++G YY Sbjct: 214 GLYFDHSTGFYYDSENQLYYDPSTGIYY 241
>P78332:RBM6_HUMAN RNA-binding protein 6 - Homo sapiens (Human)| Length = 1123 Score = 39.3 bits (90), Expect = 0.032 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Frame = +2 Query: 395 YQKDLENNQRNTDGDSSA------APGEGWVFDSTSGYYYDKSTGLYYDSNS 532 Y +D RN+D S + + +++DS +GYYYD G YYD N+ Sbjct: 761 YFRDRRGGGRNSDWSSDTNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNT 812
>Q7RZD3:STE20_NEUCR Serine/threonine-protein kinase ste-20 - Neurospora crassa| Length = 954 Score = 33.5 bits (75), Expect = 1.7 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = +3 Query: 561 NGSPRKRHTSGRKPQKLMLPNPRPHNQNRL-VEAGLSLVLKEGQPQ 695 NG+PR T G PQ P RP N + V A L + +G P+ Sbjct: 626 NGAPRMPQTQGAAPQASARPRHRPRQSNAIDVVASLKRICSDGDPR 671
>P77759:YLBH_ECOLI Putative uncharacterized protein ylbH - Escherichia coli| Length = 236 Score = 32.0 bits (71), Expect = 5.0 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +2 Query: 485 GYYYDKSTGLYYDSNSGFYYSDGLGKWVTQE 577 G YDK +GLYY+ N YY G+++TQ+ Sbjct: 40 GQQYDKESGLYYNRNR--YYDPLQGRYITQD 68 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 185,011,455 Number of extensions: 3686209 Number of successful extensions: 10147 Number of sequences better than 10.0: 14 Number of HSP's gapped: 10118 Number of HSP's successfully gapped: 19 Length of query: 388 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 273 Effective length of database: 69,142,514 Effective search space: 18875906322 Effective search space used: 18875906322 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
