| Clone Name | FLbaf42i20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001063671.1| Oryza sativa (japonica cultivar-group) Os06g0215200 (Os06g0215200) mRNA, complete cds Length = 1157 Score = 359 bits (181), Expect = 1e-95 Identities = 594/731 (81%), Gaps = 3/731 (0%) Strand = Plus / Plus Query: 163 gcccgccatgactgagtattgggtgagccaaggaaacaaatggtgcgacttgtgcaaaat 222 |||||||||||| ||||| |||||||||||||||||||||||||| ||||| || || || Sbjct: 118 gcccgccatgacggagtactgggtgagccaaggaaacaaatggtgtgacttctgtaagat 177 Query: 223 ctttatatctaacaatccgttcagcatcaggacacatgaactcggcaaacgccacaagga 282 | ||| |||| || ||| | |||||||| ||||||||| |||| || ||||||||||| Sbjct: 178 ttacatagctaataacccgctaagcatcagaacacatgaaatcggtaagcgccacaagga 237 Query: 283 caatgtcacccaaagattgtctacgatgcaaaaggatggcgctgctaaggaaaaggagca 342 ||||||||| |||||||| | || ||||||||||| || ||||| || ||||||||||| Sbjct: 238 caatgtcactaaaagattggcaaccatgcaaaaggagggtgctgccaaagaaaaggagca 297 Query: 343 gcagcaagcagctaaagccctccagctgatagaggctaaagctaaaaagagttaccaaaa 402 |||||||||||| |||||| ||| ||||| ||||||||||||||||| |||||||| Sbjct: 298 gcagcaagcagcccgggccctcaagcaaatagaagctaaagctaaaaagagctaccaaaa 357 Query: 403 agatttggagaataaccagagaaacaccgatggtgacagttctgcagcacctggagaagg 462 |||||| ||||| | || || || || ||||||| |||||| ||||||||||| || Sbjct: 358 agatttagagaacagtcaaaggaatgtggacggtgacacttctgcggcacctggagatgg 417 Query: 463 atgggtatttgactcaacttcaggatattattatgataagtctactggactttactacga 522 ||||| ||| ||||| ||||||||||| |||||||| || ||||||||||| || | || Sbjct: 418 atgggaattcgactctacttcaggatactattatgacaaatctactggactctattttga 477 Query: 523 ctcgaactctggtttctattattccgacggattaggcaaatgggtcacccaggaagaggc 582 ||| || ||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||| Sbjct: 478 ctcaaattctggtttctactattctgacggtttaggtaaatgggtcactcaggaagaggc 537 Query: 583 atacaagtgggcggaaacctcagaaactaatgttgcccaatcctcgacctcacaaccaaa 642 |||| ||||| ||||||| || |||||| || |||||||| | |||||| |||| Sbjct: 538 atacgcatgggcaaaaacctcccaagctaatgctgggcaatcctcaagttcacaaacaaa 597 Query: 643 accgactggtggaagcgggcctgtccctggtattaaaggagggccagccccaggtgtggt 702 ||| |||| | | | | ||||||| |||||||| || | ||| |||||| |||| Sbjct: 598 accaactgcttcagttgcgactgtccccacaattaaagggggccaagctccaggtttggt 657 Query: 703 tgtcacgaaacaactgaacccgatgagacctgtgaagggcgctccgtcagcccttgccgc 762 |||| ||||| |||||| ||||||||| |||| ||||| ||||| || ||| |||| | Sbjct: 658 cgtcaagaaaccactgaatccgatgagaactgtaaagggtgctccatccgccattgctgt 717 Query: 763 taacaagcgaaaaagagaggacaccaagaagcccaaggtggtttccaaggaggaggaggc 822 ||||||| |||||||||||||| | |||||||| ||| | || ||||||||||| || Sbjct: 718 taacaagagaaaaagagaggacggc---aagcccaaagtgatctcaaaggaggaggaagc 774 Query: 823 ggcactcagagcacgggaagcagcgaggaaaagagtggaggacagggagaagcctctcat 882 || || | ||| || |||||||| || |||||| ||||||| ||||||||||| | || Sbjct: 775 cgcccttaaagcgcgtgaagcagcaagaaaaagaatggaggatagggagaagcccttaat 834 Query: 883 gggattataca 893 |||| |||||| Sbjct: 835 gggactataca 845
>dbj|AK065717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038O15, full insert sequence Length = 1159 Score = 359 bits (181), Expect = 1e-95 Identities = 594/731 (81%), Gaps = 3/731 (0%) Strand = Plus / Plus Query: 163 gcccgccatgactgagtattgggtgagccaaggaaacaaatggtgcgacttgtgcaaaat 222 |||||||||||| ||||| |||||||||||||||||||||||||| ||||| || || || Sbjct: 120 gcccgccatgacggagtactgggtgagccaaggaaacaaatggtgtgacttctgtaagat 179 Query: 223 ctttatatctaacaatccgttcagcatcaggacacatgaactcggcaaacgccacaagga 282 | ||| |||| || ||| | |||||||| ||||||||| |||| || ||||||||||| Sbjct: 180 ttacatagctaataacccgctaagcatcagaacacatgaaatcggtaagcgccacaagga 239 Query: 283 caatgtcacccaaagattgtctacgatgcaaaaggatggcgctgctaaggaaaaggagca 342 ||||||||| |||||||| | || ||||||||||| || ||||| || ||||||||||| Sbjct: 240 caatgtcactaaaagattggcaaccatgcaaaaggagggtgctgccaaagaaaaggagca 299 Query: 343 gcagcaagcagctaaagccctccagctgatagaggctaaagctaaaaagagttaccaaaa 402 |||||||||||| |||||| ||| ||||| ||||||||||||||||| |||||||| Sbjct: 300 gcagcaagcagcccgggccctcaagcaaatagaagctaaagctaaaaagagctaccaaaa 359 Query: 403 agatttggagaataaccagagaaacaccgatggtgacagttctgcagcacctggagaagg 462 |||||| ||||| | || || || || ||||||| |||||| ||||||||||| || Sbjct: 360 agatttagagaacagtcaaaggaatgtggacggtgacacttctgcggcacctggagatgg 419 Query: 463 atgggtatttgactcaacttcaggatattattatgataagtctactggactttactacga 522 ||||| ||| ||||| ||||||||||| |||||||| || ||||||||||| || | || Sbjct: 420 atgggaattcgactctacttcaggatactattatgacaaatctactggactctattttga 479 Query: 523 ctcgaactctggtttctattattccgacggattaggcaaatgggtcacccaggaagaggc 582 ||| || ||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||| Sbjct: 480 ctcaaattctggtttctactattctgacggtttaggtaaatgggtcactcaggaagaggc 539 Query: 583 atacaagtgggcggaaacctcagaaactaatgttgcccaatcctcgacctcacaaccaaa 642 |||| ||||| ||||||| || |||||| || |||||||| | |||||| |||| Sbjct: 540 atacgcatgggcaaaaacctcccaagctaatgctgggcaatcctcaagttcacaaacaaa 599 Query: 643 accgactggtggaagcgggcctgtccctggtattaaaggagggccagccccaggtgtggt 702 ||| |||| | | | | ||||||| |||||||| || | ||| |||||| |||| Sbjct: 600 accaactgcttcagttgcgactgtccccacaattaaagggggccaagctccaggtttggt 659 Query: 703 tgtcacgaaacaactgaacccgatgagacctgtgaagggcgctccgtcagcccttgccgc 762 |||| ||||| |||||| ||||||||| |||| ||||| ||||| || ||| |||| | Sbjct: 660 cgtcaagaaaccactgaatccgatgagaactgtaaagggtgctccatccgccattgctgt 719 Query: 763 taacaagcgaaaaagagaggacaccaagaagcccaaggtggtttccaaggaggaggaggc 822 ||||||| |||||||||||||| | |||||||| ||| | || ||||||||||| || Sbjct: 720 taacaagagaaaaagagaggacggc---aagcccaaagtgatctcaaaggaggaggaagc 776 Query: 823 ggcactcagagcacgggaagcagcgaggaaaagagtggaggacagggagaagcctctcat 882 || || | ||| || |||||||| || |||||| ||||||| ||||||||||| | || Sbjct: 777 cgcccttaaagcgcgtgaagcagcaagaaaaagaatggaggatagggagaagcccttaat 836 Query: 883 gggattataca 893 |||| |||||| Sbjct: 837 gggactataca 847
>gb|DQ246092.1| Zea mays clone 15750 mRNA sequence Length = 1174 Score = 337 bits (170), Expect = 5e-89 Identities = 362/426 (84%) Strand = Plus / Plus Query: 165 ccgccatgactgagtattgggtgagccaaggaaacaaatggtgcgacttgtgcaaaatct 224 |||||||||| |||||||||||||||||||||||||||||||||||||| || || || | Sbjct: 148 ccgccatgacggagtattgggtgagccaaggaaacaaatggtgcgacttctgtaagattt 207 Query: 225 ttatatctaacaatccgttcagcatcaggacacatgaactcggcaaacgccacaaggaca 284 |||| | |||||| | ||||||||||||||||||||||| || || ||||||||||||| Sbjct: 208 atatagcaaacaattccttcagcatcaggacacatgaacttggtaagcgccacaaggaca 267 Query: 285 atgtcacccaaagattgtctacgatgcaaaaggatggcgctgctaaggaaaaggagcagc 344 |||||||| || || |||| || |||||||| || | | | ||||||||||| |||| Sbjct: 268 atgtcaccaaacgactgtcaacaatgcaaaaagagagtgagacaaaggaaaaggaacagc 327 Query: 345 agcaagcagctaaagccctccagctgatagaggctaaagctaaaaagagttaccaaaaag 404 ||||||| || |||||| |||| |||||| || ||||||||||||||||| ||||||| Sbjct: 328 agcaagctgcacgagccctacagcagatagaagcaaaagctaaaaagagttatcaaaaag 387 Query: 405 atttggagaataaccagagaaacaccgatggtgacagttctgcagcacctggagaaggat 464 |||| |||||||||||||| || ||||| |||| |||||||||||||||||| |||| Sbjct: 388 atttagagaataaccagaggaatgttgatggagacacttctgcagcacctggagatggat 447 Query: 465 gggtatttgactcaacttcaggatattattatgataagtctactggactttactacgact 524 |||| ||||||| | ||||||||||| |||| || |||||||||||||||||||| | Sbjct: 448 gggtgcttgactcggcgtcaggatattaccatgacaaatctactggactttactacgatt 507 Query: 525 cgaactctggtttctattattccgacggattaggcaaatgggtcacccaggaagaggcat 584 | |||||||| ||||||||||| ||| | |||||||| ||||| ||||| |||||||| | Sbjct: 508 caaactctggcttctattattctgacagtttaggcaagtgggttacccaagaagaggcgt 567 Query: 585 acaagt 590 |||||| Sbjct: 568 acaagt 573 Score = 123 bits (62), Expect = 2e-24 Identities = 101/114 (88%) Strand = Plus / Plus Query: 791 aagcccaaggtggtttccaaggaggaggaggcggcactcagagcacgggaagcagcgagg 850 |||||||||| ||| |||||||||||||| ||||| |||| ||| ||||||||||| ||| Sbjct: 780 aagcccaaggcggtctccaaggaggaggaagcggccctcaaagcgcgggaagcagcaagg 839 Query: 851 aaaagagtggaggacagggagaagcctctcatgggattatacaagacttactga 904 || ||||||||||| || |||||||| || ||||||||||||||||| |||||| Sbjct: 840 aagagagtggaggatagagagaagccgctgatgggattatacaagacgtactga 893
>dbj|AK072439.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111C14, full insert sequence Length = 2720 Score = 167 bits (84), Expect = 1e-37 Identities = 165/192 (85%) Strand = Plus / Plus Query: 163 gcccgccatgactgagtattgggtgagccaaggaaacaaatggtgcgacttgtgcaaaat 222 |||||||||||| ||||| |||||||||||||||||||||||||| ||||| || || || Sbjct: 109 gcccgccatgacggagtactgggtgagccaaggaaacaaatggtgtgacttctgtaagat 168 Query: 223 ctttatatctaacaatccgttcagcatcaggacacatgaactcggcaaacgccacaagga 282 | ||| |||| || ||| | |||||||| ||||||||| |||| || ||||||||||| Sbjct: 169 ttacatagctaataacccgctaagcatcagaacacatgaaatcggtaagcgccacaagga 228 Query: 283 caatgtcacccaaagattgtctacgatgcaaaaggatggcgctgctaaggaaaaggagca 342 ||||||||| |||||||| | || ||||||||||| || ||||| || ||||||||||| Sbjct: 229 caatgtcactaaaagattggcaaccatgcaaaaggagggtgctgccaaagaaaaggagca 288 Query: 343 gcagcaagcagc 354 |||||||||||| Sbjct: 289 gcagcaagcagc 300 Score = 159 bits (80), Expect = 3e-35 Identities = 346/434 (79%), Gaps = 3/434 (0%) Strand = Plus / Plus Query: 460 aggatgggtatttgactcaacttcaggatattattatgataagtctactggactttacta 519 |||||||| ||| ||||| ||||||||||| |||||||| || ||||||||||| || | Sbjct: 1877 aggatgggaattcgactctacttcaggatactattatgacaaatctactggactctattt 1936 Query: 520 cgactcgaactctggtttctattattccgacggattaggcaaatgggtcacccaggaaga 579 ||||| || ||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| Sbjct: 1937 tgactcaaattctggtttctactattctgacggtttaggtaaatgggtcactcaggaaga 1996 Query: 580 ggcatacaagtgggcggaaacctcagaaactaatgttgcccaatcctcgacctcacaacc 639 ||||||| ||||| ||||||| || |||||| || |||||||| | |||||| | Sbjct: 1997 ggcatacgcatgggcaaaaacctcccaagctaatgctgggcaatcctcaagttcacaaac 2056 Query: 640 aaaaccgactggtggaagcgggcctgtccctggtattaaaggagggccagccccaggtgt 699 |||||| |||| | | | | ||||||| |||||||| || | ||| |||||| | Sbjct: 2057 aaaaccaactgcttcagttgcgactgtccccacaattaaagggggccaagctccaggttt 2116 Query: 700 ggttgtcacgaaacaactgaacccgatgagacctgtgaagggcgctccgtcagcccttgc 759 ||| |||| ||||| |||||| ||||||||| |||| ||||| ||||| || ||| |||| Sbjct: 2117 ggtcgtcaagaaaccactgaatccgatgagaactgtaaagggtgctccatccgccattgc 2176 Query: 760 cgctaacaagcgaaaaagagaggacaccaagaagcccaaggtggtttccaaggaggagga 819 | ||||||| | |||||||||||| | |||||||| ||| | || ||||||||||| Sbjct: 2177 tgttaacaagagcaaaagagaggacggc---aagcccaaagtgatctcaaaggaggagga 2233 Query: 820 ggcggcactcagagcacgggaagcagcgaggaaaagagtggaggacagggagaagcctct 879 || || || | ||| || |||||||| || |||||| ||||||| ||||||||||| | Sbjct: 2234 agccgcccttaaagcgcgtgaagcagcaagaaaaagaatggaggatagggagaagccctt 2293 Query: 880 catgggattataca 893 |||||| |||||| Sbjct: 2294 aatgggactataca 2307 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 380 aaagctaaaaagagttaccaaaaagatttggagaa 414 |||||||||||||| |||||||||||||| ||||| Sbjct: 570 aaagctaaaaagagctaccaaaaagatttagagaa 604
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 147 bits (74), Expect = 1e-31 Identities = 152/178 (85%) Strand = Plus / Minus Query: 177 agtattgggtgagccaaggaaacaaatggtgcgacttgtgcaaaatctttatatctaaca 236 |||| |||||||||||||||||||||||||| ||||| || || || | ||| |||| | Sbjct: 5870841 agtactgggtgagccaaggaaacaaatggtgtgacttctgtaagatttacatagctaata 5870782 Query: 237 atccgttcagcatcaggacacatgaactcggcaaacgccacaaggacaatgtcacccaaa 296 | ||| | |||||||| ||||||||| |||| || |||||||||||||||||||| ||| Sbjct: 5870781 acccgctaagcatcagaacacatgaaatcggtaagcgccacaaggacaatgtcactaaaa 5870722 Query: 297 gattgtctacgatgcaaaaggatggcgctgctaaggaaaaggagcagcagcaagcagc 354 ||||| | || ||||||||||| || ||||| || ||||||||||||||||||||||| Sbjct: 5870721 gattggcaaccatgcaaaaggagggtgctgccaaagaaaaggagcagcagcaagcagc 5870664 Score = 99.6 bits (50), Expect = 2e-17 Identities = 178/220 (80%), Gaps = 3/220 (1%) Strand = Plus / Minus Query: 674 attaaaggagggccagccccaggtgtggttgtcacgaaacaactgaacccgatgagacct 733 |||||||| || | ||| |||||| |||| |||| ||||| |||||| ||||||||| || Sbjct: 5868772 attaaagggggccaagctccaggtttggtcgtcaagaaaccactgaatccgatgagaact 5868713 Query: 734 gtgaagggcgctccgtcagcccttgccgctaacaagcgaaaaagagaggacaccaagaag 793 || ||||| ||||| || ||| |||| | ||||||| |||||||||||||| | ||| Sbjct: 5868712 gtaaagggtgctccatccgccattgctgttaacaagagaaaaagagaggacggc---aag 5868656 Query: 794 cccaaggtggtttccaaggaggaggaggcggcactcagagcacgggaagcagcgaggaaa 853 ||||| ||| | || ||||||||||| || || || | ||| || |||||||| || ||| Sbjct: 5868655 cccaaagtgatctcaaaggaggaggaagccgcccttaaagcgcgtgaagcagcaagaaaa 5868596 Query: 854 agagtggaggacagggagaagcctctcatgggattataca 893 ||| ||||||| ||||||||||| | |||||| |||||| Sbjct: 5868595 agaatggaggatagggagaagcccttaatgggactataca 5868556 Score = 77.8 bits (39), Expect = 8e-11 Identities = 84/99 (84%) Strand = Plus / Minus Query: 460 aggatgggtatttgactcaacttcaggatattattatgataagtctactggactttacta 519 |||||||| ||| ||||| ||||||||||| |||||||| || ||||||||||| || | Sbjct: 5869087 aggatgggaattcgactctacttcaggatactattatgacaaatctactggactctattt 5869028 Query: 520 cgactcgaactctggtttctattattccgacggattagg 558 ||||| || ||||||||||| ||||| ||||| ||||| Sbjct: 5869027 tgactcaaattctggtttctactattctgacggtttagg 5868989 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Minus Query: 380 aaagctaaaaagagttaccaaaaagatttggagaa 414 |||||||||||||| |||||||||||||| ||||| Sbjct: 5870394 aaagctaaaaagagctaccaaaaagatttagagaa 5870360
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 147 bits (74), Expect = 1e-31 Identities = 152/178 (85%) Strand = Plus / Minus Query: 177 agtattgggtgagccaaggaaacaaatggtgcgacttgtgcaaaatctttatatctaaca 236 |||| |||||||||||||||||||||||||| ||||| || || || | ||| |||| | Sbjct: 71616 agtactgggtgagccaaggaaacaaatggtgtgacttctgtaagatttacatagctaata 71557 Query: 237 atccgttcagcatcaggacacatgaactcggcaaacgccacaaggacaatgtcacccaaa 296 | ||| | |||||||| ||||||||| |||| || |||||||||||||||||||| ||| Sbjct: 71556 acccgctaagcatcagaacacatgaaatcggtaagcgccacaaggacaatgtcactaaaa 71497 Query: 297 gattgtctacgatgcaaaaggatggcgctgctaaggaaaaggagcagcagcaagcagc 354 ||||| | || ||||||||||| || ||||| || ||||||||||||||||||||||| Sbjct: 71496 gattggcaaccatgcaaaaggagggtgctgccaaagaaaaggagcagcagcaagcagc 71439 Score = 99.6 bits (50), Expect = 2e-17 Identities = 178/220 (80%), Gaps = 3/220 (1%) Strand = Plus / Minus Query: 674 attaaaggagggccagccccaggtgtggttgtcacgaaacaactgaacccgatgagacct 733 |||||||| || | ||| |||||| |||| |||| ||||| |||||| ||||||||| || Sbjct: 69547 attaaagggggccaagctccaggtttggtcgtcaagaaaccactgaatccgatgagaact 69488 Query: 734 gtgaagggcgctccgtcagcccttgccgctaacaagcgaaaaagagaggacaccaagaag 793 || ||||| ||||| || ||| |||| | ||||||| |||||||||||||| | ||| Sbjct: 69487 gtaaagggtgctccatccgccattgctgttaacaagagaaaaagagaggacggc---aag 69431 Query: 794 cccaaggtggtttccaaggaggaggaggcggcactcagagcacgggaagcagcgaggaaa 853 ||||| ||| | || ||||||||||| || || || | ||| || |||||||| || ||| Sbjct: 69430 cccaaagtgatctcaaaggaggaggaagccgcccttaaagcgcgtgaagcagcaagaaaa 69371 Query: 854 agagtggaggacagggagaagcctctcatgggattataca 893 ||| ||||||| ||||||||||| | |||||| |||||| Sbjct: 69370 agaatggaggatagggagaagcccttaatgggactataca 69331 Score = 77.8 bits (39), Expect = 8e-11 Identities = 84/99 (84%) Strand = Plus / Minus Query: 460 aggatgggtatttgactcaacttcaggatattattatgataagtctactggactttacta 519 |||||||| ||| ||||| ||||||||||| |||||||| || ||||||||||| || | Sbjct: 69862 aggatgggaattcgactctacttcaggatactattatgacaaatctactggactctattt 69803 Query: 520 cgactcgaactctggtttctattattccgacggattagg 558 ||||| || ||||||||||| ||||| ||||| ||||| Sbjct: 69802 tgactcaaattctggtttctactattctgacggtttagg 69764 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Minus Query: 380 aaagctaaaaagagttaccaaaaagatttggagaa 414 |||||||||||||| |||||||||||||| ||||| Sbjct: 71169 aaagctaaaaagagctaccaaaaagatttagagaa 71135
>dbj|AK061707.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-F06, full insert sequence Length = 559 Score = 99.6 bits (50), Expect = 2e-17 Identities = 178/220 (80%), Gaps = 3/220 (1%) Strand = Plus / Plus Query: 674 attaaaggagggccagccccaggtgtggttgtcacgaaacaactgaacccgatgagacct 733 |||||||| || | ||| |||||| |||| |||| ||||| |||||| ||||||||| || Sbjct: 34 attaaagggggccaagctccaggtttggtcgtcaagaaaccactgaatccgatgagaact 93 Query: 734 gtgaagggcgctccgtcagcccttgccgctaacaagcgaaaaagagaggacaccaagaag 793 || ||||| ||||| || ||| |||| | ||||||| |||||||||||||| | ||| Sbjct: 94 gtaaagggtgctccatccgccattgctgttaacaagagaaaaagagaggacggc---aag 150 Query: 794 cccaaggtggtttccaaggaggaggaggcggcactcagagcacgggaagcagcgaggaaa 853 ||||| ||| | || ||||||||||| || || || | ||| || |||||||| || ||| Sbjct: 151 cccaaagtgatctcaaaggaggaggaagccgcccttaaagcgcgtgaagcagcaagaaaa 210 Query: 854 agagtggaggacagggagaagcctctcatgggattataca 893 ||| ||||||| ||||||||||| | |||||| |||||| Sbjct: 211 agaatggaggatagggagaagcccttaatgggactataca 250
>ref|NM_103847.3| Arabidopsis thaliana nucleic acid binding / zinc ion binding (AT1G49590) mRNA, complete cds Length = 1139 Score = 58.0 bits (29), Expect = 7e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 167 gccatgactgagtattgggtgagccaaggaaacaaatggtg 207 |||||||||||||||||||| || ||||| ||||||||||| Sbjct: 175 gccatgactgagtattgggtaagtcaagggaacaaatggtg 215
>emb|BX813576.1|CNS0ACD1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB25ZD09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1330 Score = 58.0 bits (29), Expect = 7e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 167 gccatgactgagtattgggtgagccaaggaaacaaatggtg 207 |||||||||||||||||||| || ||||| ||||||||||| Sbjct: 114 gccatgactgagtattgggtaagtcaagggaacaaatggtg 154
>emb|BX813573.1|CNS0ACBW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB25ZC09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1333 Score = 58.0 bits (29), Expect = 7e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 167 gccatgactgagtattgggtgagccaaggaaacaaatggtg 207 |||||||||||||||||||| || ||||| ||||||||||| Sbjct: 114 gccatgactgagtattgggtaagtcaagggaacaaatggtg 154
>gb|BT010196.1| Arabidopsis thaliana At1g49590 gene, complete cds Length = 729 Score = 52.0 bits (26), Expect = 0.005 Identities = 35/38 (92%) Strand = Plus / Plus Query: 170 atgactgagtattgggtgagccaaggaaacaaatggtg 207 ||||||||||||||||| || ||||| ||||||||||| Sbjct: 1 atgactgagtattgggtaagtcaagggaacaaatggtg 38
>emb|BX816601.1|CNS0ABK8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH58ZC06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1432 Score = 50.1 bits (25), Expect = 0.018 Identities = 37/41 (90%) Strand = Plus / Plus Query: 167 gccatgactgagtattgggtgagccaaggaaacaaatggtg 207 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 104 gccatgactgattattgggtaagtcaagggaacaaatggtg 144
>gb|AC151621.20| Medicago truncatula clone mth2-14p3, complete sequence Length = 126611 Score = 48.1 bits (24), Expect = 0.072 Identities = 63/76 (82%) Strand = Plus / Plus Query: 177 agtattgggtgagccaaggaaacaaatggtgcgacttgtgcaaaatctttatatctaaca 236 |||| ||||| || || ||||||||||||||||| |||||||||| | ||||| |||| Sbjct: 78368 agtactgggtaagtcagggaaacaaatggtgcgatgtgtgcaaaatttacatatcaaaca 78427 Query: 237 atccgttcagcatcag 252 | || | ||||||||| Sbjct: 78428 acccttccagcatcag 78443
>emb|CT737339.6| Pig DNA sequence from clone CH242-154E22 on chromosome 14, complete sequence Length = 136991 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Minus Query: 392 agttaccaaaaagatttggagaa 414 ||||||||||||||||||||||| Sbjct: 99121 agttaccaaaaagatttggagaa 99099
>gb|AC160395.2| Mus musculus BAC clone RP23-36C19 from chromosome 12, complete sequence Length = 207840 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Plus Query: 850 gaaaagagtggaggacagggaga 872 ||||||||||||||||||||||| Sbjct: 129705 gaaaagagtggaggacagggaga 129727
>gb|AC161493.6| Mus musculus chromosome 1, clone RP24-77I21, complete sequence Length = 226794 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1044 acatgtatgcattgtacaatac 1065 |||||||||||||||||||||| Sbjct: 45429 acatgtatgcattgtacaatac 45450
>ref|XM_729219.1| Plasmodium chabaudi chabaudi hypothetical protein (PC405185.00.0) partial mRNA Length = 312 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1044 acatgtatgcattgtacaatac 1065 |||||||||||||||||||||| Sbjct: 38 acatgtatgcattgtacaatac 17
>gb|U66590.1|HSU66590 Human ribosomal protein L5 pseudogene mRNA, partial cds Length = 910 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 cgcctccccctccccgaccgcc 59 |||||||||||||||||||||| Sbjct: 21 cgcctccccctccccgaccgcc 42
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 693 caggtgtggttgtcacgaaaca 714 |||||||||||||||||||||| Sbjct: 1472770 caggtgtggttgtcacgaaaca 1472791
>gb|AC139376.3| Mus musculus BAC clone RP24-420A20 from chromosome 10, complete sequence Length = 184039 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 atttggagaataaccagagaa 425 ||||||||||||||||||||| Sbjct: 128396 atttggagaataaccagagaa 128376
>gb|AC135962.4| Mus musculus BAC clone RP23-342H15 from chromosome 16, complete sequence Length = 202525 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1047 tgtatgcattgtacaatacct 1067 ||||||||||||||||||||| Sbjct: 24930 tgtatgcattgtacaatacct 24910
>gb|AC124681.3| Mus musculus BAC clone RP24-261H7 from chromosome 16, complete sequence Length = 173837 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1047 tgtatgcattgtacaatacct 1067 ||||||||||||||||||||| Sbjct: 152050 tgtatgcattgtacaatacct 152030
>gb|AC099742.2| Papio anubis clone RP41-167P22, complete sequence Length = 171612 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 215 tgcaaaatctttatatctaacaatc 239 ||||||||||||| ||||||||||| Sbjct: 71795 tgcaaaatctttaaatctaacaatc 71771
>emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in linkage group 14, complete sequence Length = 190254 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 847 gaggaaaagagtggaggacag 867 ||||||||||||||||||||| Sbjct: 45289 gaggaaaagagtggaggacag 45269
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 gcctccccctccccgaccgcc 59 ||||||||||||||||||||| Sbjct: 65219 gcctccccctccccgaccgcc 65199
>emb|AL713920.14| Mouse DNA sequence from clone RP23-330B20 on chromosome X, complete sequence Length = 156186 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 gtgagccaaggaaacaaatgg 205 ||||||||||||||||||||| Sbjct: 137963 gtgagccaaggaaacaaatgg 137943 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 203,849,359 Number of extensions: 11823498 Number of successful extensions: 233647 Number of sequences better than 10.0: 26 Number of HSP's gapped: 233633 Number of HSP's successfully gapped: 43 Length of query: 1165 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1142 Effective length of database: 18,503,978,556 Effective search space: 21131543510952 Effective search space used: 21131543510952 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)