ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf42h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P73893:Y272_SYNY3 Uncharacterized protein slr0272 - Synechocysti... 33 2.5
2P23842:YFEA_ECOLI Uncharacterized protein yfeA - Escherichia coli 33 3.3
3Q9ERC1:MYO16_RAT Myosin-XVI - Rattus norvegicus (Rat) 33 4.3
4Q32L04:LELP1_BOVIN Late cornified envelope-like proline-rich pro... 33 4.3
5Q4JC76:AROB_SULAC 3-dehydroquinate synthase - Sulfolobus acidoca... 32 5.6
6P38739:WSC4_YEAST Cell wall integrity and stress response compon... 32 9.5
7P70064:T7L1D_XENLA Transcription factor 7-like 1-D - Xenopus lae... 32 9.5
8P70063:T7L1C_XENLA Transcription factor 7-like 1-C - Xenopus lae... 32 9.5

>P73893:Y272_SYNY3 Uncharacterized protein slr0272 - Synechocystis sp. (strain PCC 6803)|
          Length = 325
 Score = 33.5 bits (75), Expect = 2.5
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = -1

Query: 1130 TSCKDQHGRQVSWTKCCKCPRASVSPHPLNYWPPLQPC*TPPAQSPSSHAPCISRCTLP 954
            T+C ++   QV + + C CP A  S  P    PPL P   PP        P   R   P
Sbjct: 8    TNCGNRLSPQVRFCESCGCPVALTSEPPSFSGPPLSPLPPPPPTFNVDEVPSHKRGVTP 66



to top

>P23842:YFEA_ECOLI Uncharacterized protein yfeA - Escherichia coli|
          Length = 729

 Score = 33.1 bits (74), Expect = 3.3
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +2

Query: 425 ILRNQVQSLICLLSKADEPVEVYHDKEFKNRRWHFQSYNFTVSLVWAPFLVKSEVFENEN 604
           IL   +   +CLL      V +YH  E+ NRRWH Q+    ++L+   F    +  E E 
Sbjct: 294 ILAVLISFSVCLLYM----VRIYHRSEWLNRRWHLQALTDPLTLL-PNFRALEQAPEQEA 348

Query: 605 GES 613
           G+S
Sbjct: 349 GKS 351



to top

>Q9ERC1:MYO16_RAT Myosin-XVI - Rattus norvegicus (Rat)|
          Length = 1912

 Score = 32.7 bits (73), Expect = 4.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 1082 CKCPRASVSPHPLNYWPPLQPC*TPPAQSPSSHAPC 975
            C  P A   P P+   PP  PC  PPA   ++ APC
Sbjct: 1606 CGPPPAPCGPPPVPCGPPPAPCGPPPAPCGAAPAPC 1641



to top

>Q32L04:LELP1_BOVIN Late cornified envelope-like proline-rich protein 1 - Bos taurus|
            (Bovine)
          Length = 110

 Score = 32.7 bits (73), Expect = 4.3
 Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = -1

Query: 1088 KCCKCPRASVS-PHPLNYWPPLQPC*TPPAQSPSSHAPCISRCTLPSC 948
            KC  CP    S P P    PP  P   PP   P    PC+  C  P C
Sbjct: 56   KCTPCPPCPPSCPPPPKCPPPCPPPCPPPCPPPCPPKPCVKSCP-PKC 102



to top

>Q4JC76:AROB_SULAC 3-dehydroquinate synthase - Sulfolobus acidocaldarius|
          Length = 353

 Score = 32.3 bits (72), Expect = 5.6
 Identities = 16/68 (23%), Positives = 35/68 (51%)
 Frame = +2

Query: 500 KEFKNRRWHFQSYNFTVSLVWAPFLVKSEVFENENGESTSEIQLHLDILEPTWISQYERF 679
           +E +N++  F S +  +  +      +  +   ++GE   +IQ  L++L+  +   ++R 
Sbjct: 27  REIQNKKAIFYSSSVNIDFIKPHLEGEYTLVPIKDGEEAKDIQYSLELLKVLFDGGFDRG 86

Query: 680 DYVVIAGG 703
           DYV+  GG
Sbjct: 87  DYVIAIGG 94



to top

>P38739:WSC4_YEAST Cell wall integrity and stress response component 4 precursor -|
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 605

 Score = 31.6 bits (70), Expect = 9.5
 Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 3/150 (2%)
 Frame = +3

Query: 480 LSRSTTIKNSKIGDGTSNHTTSPCPSFGLPSSSN--QRFLKMRMASPRLR-SSFTLTYLN 650
           +S STT   S     TS  TTSP  S    SSSN           SP    SS T+TY +
Sbjct: 251 ISTSTTSSTS-----TSTSTTSPTSSSAPTSSSNTTPTSTTFTTTSPSTAPSSTTVTYTS 305

Query: 651 QPG*VSTRGLTML*LPVDNGFSRLRFTGRMVRC*AVIIARTRT*LKLGLSTCIAGLYKRY 830
                 T  +T + L     +S             + +    T     + T I+ +  RY
Sbjct: 306 TTASPITSTITSVNLQTSLKYS------------VITVTSVHT-----MDTNISEITSRY 348

Query: 831 LDSSPRHTISQLFSSELGRLTTLRMASGSA 920
           L  + +  I+Q++SS LG   T  +A+ SA
Sbjct: 349 L--TMKKVITQIYSSTLGATPTSAVATTSA 376



to top

>P70064:T7L1D_XENLA Transcription factor 7-like 1-D - Xenopus laevis (African clawed|
           frog)
          Length = 550

 Score = 31.6 bits (70), Expect = 9.5
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -2

Query: 997 PPHHMLHV----FPAVLSLLVRQYPITGSTAEPLAILKVVRRPSSEE 869
           PPHH LH      PA++S +V+Q P +G+ +  L++   V     EE
Sbjct: 272 PPHHSLHTSGIPHPAIVSPIVKQEPSSGNISPNLSMKSNVVVKKEEE 318



to top

>P70063:T7L1C_XENLA Transcription factor 7-like 1-C - Xenopus laevis (African clawed|
            frog)
          Length = 550

 Score = 31.6 bits (70), Expect = 9.5
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
 Frame = -2

Query: 1126 PVRTSMAVRSHGRNAVSVQELQFHHIP*TIGRRYSLVELLQ-------LNPPHHMLHV-- 974
            P R    V   G+   S+    F H    +    S+  L+        + PPHH LH   
Sbjct: 222  PHRLGWLVPQQGQPMYSIPPGGFRHPYPALAMNASMSSLVSSRFSPHMVPPPHHSLHTSG 281

Query: 973  --FPAVLSLLVRQYPITGSTAEPLA 905
               PA++S +V+Q P +G+ +  L+
Sbjct: 282  IPHPAIVSPIVKQEPSSGNISPNLS 306


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 299,942,005
Number of extensions: 6927455
Number of successful extensions: 16695
Number of sequences better than 10.0: 8
Number of HSP's gapped: 16673
Number of HSP's successfully gapped: 8
Length of query: 518
Length of database: 100,686,439
Length adjustment: 118
Effective length of query: 400
Effective length of database: 68,319,629
Effective search space: 27327851600
Effective search space used: 27327851600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top