ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf39b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q4PID3:APTH1_USTMA Acyl-protein thioesterase 1 - Ustilago maydis... 33 1.5
2Q829X3:UVRA_STRAW UvrABC system protein A - Streptomyces avermit... 31 7.4
3P51850:PDC1_PEA Pyruvate decarboxylase isozyme 1 - Pisum sativum... 31 7.4
4Q3UIL6:PKHA7_MOUSE Pleckstrin homology domain-containing family ... 30 9.7
5Q8RWS9:CNGC5_ARATH Probable cyclic nucleotide-gated ion channel ... 30 9.7

>Q4PID3:APTH1_USTMA Acyl-protein thioesterase 1 - Ustilago maydis (Smut fungus)|
          Length = 240
 Score = 33.1 bits (74), Expect = 1.5
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 385 LTSPEMLATYWALR-WMPLALVKATPLMSSTTRVTALTGLRSPTARWLKVFQMKAEASER 209
           LT+P  +A   AL  W+PL    AT              LR+PT++ LKVFQ   +A   
Sbjct: 140 LTNPTPVAGVAALSTWLPLRAKIAT--------------LRTPTSKTLKVFQAHGDADPV 185

Query: 208 TFLEYGRPT 182
              EYG+ T
Sbjct: 186 VKYEYGQRT 194



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>Q829X3:UVRA_STRAW UvrABC system protein A - Streptomyces avermitilis|
          Length = 1009

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -2

Query: 686  VLAENLREEVVGVPTLHLGVELR---DEPGLQ*VAVVEEPRR 570
            V+AE   EEV GVPT H G  LR   D   +   A V+ PR+
Sbjct: 919  VVAEGTPEEVAGVPTSHTGKFLREILDADRISDAASVKAPRK 960



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>P51850:PDC1_PEA Pyruvate decarboxylase isozyme 1 - Pisum sativum (Garden pea)|
          Length = 593

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 298 TTRVTALTGLRSPTARWLKVFQMKAEASERTFLEYGRPTACSNSRPP 158
           T  +   TG    +  +++VF  K + S+   LE+G   A +NSRPP
Sbjct: 545 TEAIATATGAEKDSLCFIEVFAHKDDTSKE-LLEWGSRVAAANSRPP 590



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>Q3UIL6:PKHA7_MOUSE Pleckstrin homology domain-containing family A member 7 - Mus|
           musculus (Mouse)
          Length = 1118

 Score = 30.4 bits (67), Expect = 9.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 596 VAVVEEPRRDVVPLIPSVSLPRLHPVPRREPGLEPHVVGDPL 471
           V  V+ P R  VPL P  S+P L P    +P L+P     P+
Sbjct: 830 VGSVKNPERKTVPLFPHPSVPSLSPT-ESKPALQPSPPTSPV 870



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>Q8RWS9:CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 - Arabidopsis|
           thaliana (Mouse-ear cress)
          Length = 717

 Score = 30.4 bits (67), Expect = 9.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 590 LRLTEARVRRAAQRQDEEWVHRRLLRADSRQ 682
           +RL E RV+R   R  E+W+H R+L  D R+
Sbjct: 424 IRLEEMRVKR---RDSEQWMHHRMLPQDLRE 451


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 116,437,812
Number of extensions: 2557881
Number of successful extensions: 8579
Number of sequences better than 10.0: 5
Number of HSP's gapped: 8569
Number of HSP's successfully gapped: 5
Length of query: 292
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 180
Effective length of database: 69,965,399
Effective search space: 12593771820
Effective search space used: 12593771820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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