ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf38p20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotra... 147 7e-32
2gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotra... 119 2e-23
3gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotra... 103 9e-19
4gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotra... 103 9e-19
5gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula ... 101 4e-18
6gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposo... 100 1e-17
7gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotra... 96 2e-16
8gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposo... 96 2e-16
9gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposo... 96 2e-16
10gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposo... 96 2e-16
11gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retr... 90 1e-14
12gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposo... 90 1e-14
13gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransp... 90 1e-14
14gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransp... 90 1e-14
15gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg... 88 5e-14
16gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 86 2e-13
17gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long term... 82 3e-12
18emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 82 3e-12
19gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 80 1e-11
20gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 80 1e-11
21gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 80 1e-11
22gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 80 1e-11
23gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC cl... 80 1e-11
24emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroel... 80 1e-11
25dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-li... 80 1e-11
26gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotrans... 72 3e-09
27gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transpor... 72 3e-09
28gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 70 1e-08
29gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 64 8e-07
30gb|DQ663708.1| Brachypodium distachyon Sukkula retrotransposon, ... 54 7e-04
31gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotra... 54 7e-04
32gb|AF029897.1|AF029897 Triticum aestivum acetyl-coenzyme A carbo... 52 0.003
33gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14... 48 0.046
34emb|AL162388.8| Human DNA sequence from clone RP11-373A6 on chro... 48 0.046
35gb|DQ663707.1| Brachypodium distachyon Sukkula retrotransposon, ... 46 0.18
36emb|CT009586.1| Triticum aestivum 46 0.18
37gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkul... 46 0.18
38gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 ... 46 0.18
39gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransp... 46 0.18
40gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotran... 46 0.18
41gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, com... 44 0.72
42gb|AC093339.17| Mus musculus chromosome 19, clone RP23-5G6, comp... 44 0.72
43gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposo... 44 0.72
44gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposo... 44 0.72
45gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, com... 44 0.72
46emb|AL441989.13| Human DNA sequence from clone RP11-360A18 on ch... 44 0.72
47gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, co... 44 0.72
48emb|AL807758.5| Mouse DNA sequence from clone RP23-469A1 on chro... 44 0.72
49gb|CP000471.1| Magnetococcus sp. MC-1, complete genome 42 2.8
50gb|AC122364.4| Mus musculus chromosome 8 clone RP23-442K12, comp... 42 2.8
51gb|BC061083.1| Mus musculus chymotrypsinogen B1, mRNA (cDNA clon... 42 2.8
52gb|AC139377.4| Mus musculus chromosome 5 clone RP24-291G12, comp... 42 2.8
53gb|AC137871.18| Mus musculus chromosome 15, clone RP23-41B9, com... 42 2.8
54dbj|AK098303.1| Homo sapiens cDNA FLJ40984 fis 42 2.8
55dbj|AK098288.1| Homo sapiens cDNA FLJ40969 fis, clone UTERU2012688 42 2.8
56dbj|AK003079.1| Mus musculus adult male spleen cDNA, RIKEN full-... 42 2.8
57ref|NM_025583.1| Mus musculus chymotrypsinogen B1 (Ctrb1), mRNA ... 42 2.8
58dbj|AK008927.1| Mus musculus adult male stomach cDNA, RIKEN full... 42 2.8
59dbj|AK008888.1| Mus musculus adult male stomach cDNA, RIKEN full... 42 2.8
60dbj|AK008729.1| Mus musculus adult male stomach cDNA, RIKEN full... 42 2.8
61dbj|AK008644.2| Mus musculus adult male stomach cDNA, RIKEN full... 42 2.8
62dbj|AK018554.1| Mus musculus adult male colon cDNA, RIKEN full-l... 42 2.8
63dbj|AK007815.1| Mus musculus 10 day old male pancreas cDNA, RIKE... 42 2.8
64dbj|AK007765.1| Mus musculus 10 day old male pancreas cDNA, RIKE... 42 2.8
65dbj|AK007566.1| Mus musculus 10 day old male pancreas cDNA, RIKE... 42 2.8
66emb|AL138914.9| Human DNA sequence from clone RP11-15L1 on chrom... 42 2.8
67emb|AL031661.28|HS404H4 Human DNA sequence from clone RP3-404H4 ... 42 2.8
68emb|AL034419.22|HS1108D11 Human DNA sequence from clone RP5-1108... 42 2.8
69gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 42 2.8
70gb|AC116609.6| Homo sapiens BAC clone RP13-539J13 from 2, comple... 42 2.8
71emb|AJ331782.1|HSA331782 Homo sapiens genomic sequence surroundi... 42 2.8
72emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in... 42 2.8
73emb|AL837522.8| Mouse DNA sequence from clone RP23-264L10 on chr... 42 2.8
74gb|AC170761.3| Rhesus Macaque CHR5 BAC CH250-342J4 (Children's H... 42 2.8 
>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial
           sequence
          Length = 3862
 Score =  147 bits (74), Expect = 7e-32
 Identities = 176/206 (85%), Gaps = 3/206 (1%)
 Strand = Plus / Plus

                                                                       
Query: 522 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcgcc-gttgccggac 580
           |||| |||||||||||||||||| ||||||||  ||||||| ||||| | || | |||||
Sbjct: 2   cagcctgggatagcaaggatggatgtcgtttta-tcgtttgttttcgtctgtagtcggac 60

                                                                       
Query: 581 cctgctcttctacatggtgactgaatgtattgatgtattgtgatgttcatgatt-agctt 639
           |||||||||||  ||| ||| ||||||| ||| |||||||  ||| |||||||| |||||
Sbjct: 61  cctgctcttctgtatgatgattgaatgtgttgttgtattgatatgatcatgatttagctt 120

                                                                       
Query: 640 gtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgtaacaata 699
           ||||||||||||| |||||||||||||||||| |||| | |||||||| ||||||  |||
Sbjct: 121 gtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgtaatgata 180

                                     
Query: 700 tccattccttcaaaacaacgagatgc 725
           ||||||| | | |||| |||||||||
Sbjct: 181 tccattcttgcgaaacgacgagatgc 206
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>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial
           sequence
          Length = 3698

 Score =  119 bits (60), Expect = 2e-23
 Identities = 160/189 (84%), Gaps = 7/189 (3%)
 Strand = Plus / Plus

                                                                       
Query: 522 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 580
           |||| |||||||||||||||||| || |||||  ||||||| ||||| |||| |||||||
Sbjct: 2   cagcctgggatagcaaggatggatgttgtttta-tcgtttgttttcgtccgtagccggac 60

                                                                       
Query: 581 cctgctcttctacatggtgactgaatgtattgatgtattg---tgatgttcatgattagc 637
           |||||||||||  ||| ||| || || |||||||||||||   |||| ||  ||  ||||
Sbjct: 61  cctgctcttctgtatgatgattgtatatattgatgtattgatgtgatattgttg--tagc 118

                                                                       
Query: 638 ttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgtaacaa 697
           ||||||||||||||| |||||||||||||||||| |||| | |||||||| ||||||  |
Sbjct: 119 ttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgtaatga 178

                    
Query: 698 tatccattc 706
           |||||||||
Sbjct: 179 tatccattc 187
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>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial
           sequence
          Length = 3804

 Score =  103 bits (52), Expect = 9e-19
 Identities = 159/189 (84%), Gaps = 8/189 (4%)
 Strand = Plus / Plus

                                                                       
Query: 522 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 580
           |||| |||||||||||||||||| || |||||  ||||||| ||||| |||| |||||||
Sbjct: 2   cagcctgggatagcaaggatggatgttgtttta-tcgtttgttttcgtccgtagccggac 60

                                                                       
Query: 581 cctgctcttctacatggtgactgaatgtattgatgtattg---tgatgttcatgattagc 637
           |||||||||||  ||| ||| ||  | |||||||||||||   |||| ||  ||  ||||
Sbjct: 61  cctgctcttctgtatgatgattgt-tatattgatgtattgatgtgatattgttg--tagc 117

                                                                       
Query: 638 ttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgtaacaa 697
           ||||||||||||||| |||||||||||||||||| |||| | |||||||| ||||||  |
Sbjct: 118 ttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgtaatga 177

                    
Query: 698 tatccattc 706
           |||||||||
Sbjct: 178 tatccattc 186
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>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial
           sequence
          Length = 3943

 Score =  103 bits (52), Expect = 9e-19
 Identities = 159/189 (84%), Gaps = 8/189 (4%)
 Strand = Plus / Plus

                                                                       
Query: 522 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 580
           |||| |||||||||||||||||| || |||||  ||||||| ||||| |||| |||||||
Sbjct: 2   cagcctgggatagcaaggatggatgttgtttta-tcgtttgttttcgtccgtagccggac 60

                                                                       
Query: 581 cctgctcttctacatggtgactgaatgtattgatgtattg---tgatgttcatgattagc 637
           |||||||||||  ||| ||| ||  | |||||||||||||   |||| ||  ||  ||||
Sbjct: 61  cctgctcttctgtatgatgattgt-tatattgatgtattgatgtgatattgttg--tagc 117

                                                                       
Query: 638 ttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgtaacaa 697
           ||||||||||||||| |||||||||||||||||| |||| | |||||||| ||||||  |
Sbjct: 118 ttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgtaatga 177

                    
Query: 698 tatccattc 706
           |||||||||
Sbjct: 178 tatccattc 186
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>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon,
           partial sequence
          Length = 3434

 Score =  101 bits (51), Expect = 4e-18
 Identities = 172/208 (82%), Gaps = 7/208 (3%)
 Strand = Plus / Plus

                                                                       
Query: 522 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 580
           |||| |||||||||||||||||| ||| ||||  ||||||| ||||| |||| | |||||
Sbjct: 2   cagcctgggatagcaaggatggatgtcatttta-tcgtttgttttcgtccgtagtcggac 60

                                                                       
Query: 581 cctgctcttctacatggtgactgaatgtattgatgtattg---tgatgttcatgattagc 637
           |||||||||||  ||| ||  || || | ||| |||||||   |||| || |||  ||||
Sbjct: 61  cctgctcttctgtatgatgtttgtatttgttgttgtattgatgtgatattgatg--tagc 118

                                                                       
Query: 638 ttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgtaacaa 697
           ||||||||||||||| |||||||||||||||||| |||| | |||||||| ||||||  |
Sbjct: 119 ttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgtaatga 178

                                       
Query: 698 tatccattccttcaaaacaacgagatgc 725
           ||||||||| | ||| || |||||||||
Sbjct: 179 tatccattcttgcaacacgacgagatgc 206
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>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence
          Length = 7674

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 82/90 (91%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                        
Query: 501  ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttctcgtt 560
            ||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct: 4033 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcg-ttttctcgtt 4091

                                          
Query: 561  tgatttcg-ccgttgccggaccctgctctt 589
            || ||||| |||| | ||||||||||||||
Sbjct: 4092 tgttttcgtccgtagtcggaccctgctctt 4121



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 75/88 (85%)
 Strand = Plus / Plus

                                                                        
Query: 414  gtgaggattcattcgactacattggtttgtcttcttcatggattcattgttcttccaaac 473
            ||||||| || ||||||||| | |||| |||| ||||| |||  |||| ||||||||| |
Sbjct: 2586 gtgaggactcgttcgactacgtcggttcgtctgcttcacggaggcattcttcttccaagc 2645

                                        
Query: 474  gggatcacaagcaagatgatcatttccc 501
            |||||| || ||||||||||||||||||
Sbjct: 2646 gggatctcaggcaagatgatcatttccc 2673



 Score = 46.1 bits (23), Expect = 0.18
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 634  tagcttgtggcgagtgtaatccaattc 660
            ||||||||||||||||||| |||||||
Sbjct: 4162 tagcttgtggcgagtgtaagccaattc 4188
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>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7586

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 84/96 (87%)
 Strand = Plus / Plus

                                                                        
Query: 634  tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 693
            ||||||||||||||||||| |||||||||||||||||| |||| | |||||||| |||||
Sbjct: 4077 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgta 4136

                                                
Query: 694  acaatatccattccttcaaaacaacgagatgcactt 729
            |  |||||||||| | | | || |||||||||||||
Sbjct: 4137 atgatatccattcttgcgacacgacgagatgcactt 4172



 Score = 73.8 bits (37), Expect = 8e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 414  gtgaggattcattcgactacattggtttgtcttcttcatggattcattgttcttccaaac 473
            |||||||||| ||||||||| |||||| || | ||||| || ||| || ||||||||| |
Sbjct: 2516 gtgaggattcgttcgactacgttggttcgtttacttcacggtttcgttcttcttccaagc 2575

                                         
Query: 474  gggatcacaagcaagatgatcatttccct 502
            |||||| |  |||||||||||||||||||
Sbjct: 2576 gggatctcgggcaagatgatcatttccct 2604



 Score = 42.1 bits (21), Expect = 2.8
 Identities = 37/41 (90%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                     
Query: 503  aggatgggttctaggccgacagcttgggatagcaaggatgg 543
            ||||||||||| |||| | |||| |||||||||||||||||
Sbjct: 3946 aggatgggttccaggcgg-cagcctgggatagcaaggatgg 3985
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>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula,
           complete sequence
          Length = 3695

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 157/189 (83%), Gaps = 7/189 (3%)
 Strand = Plus / Plus

                                                                       
Query: 522 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 580
           |||| |||||||||||||||||| ||| ||||  ||||||| ||||| |||| |  ||||
Sbjct: 2   cagcctgggatagcaaggatggatgtcatttta-tcgtttgttttcgtccgtagatggac 60

                                                                       
Query: 581 cctgctcttctacatggtgactgaatgtattgatgtattg---tgatgttcatgattagc 637
           |||||||||||  ||| ||   |||| | ||| |||||||   ||||||| |||  ||||
Sbjct: 61  cctgctcttctgtatgatgttcgaatatgttgttgtattgatgtgatgttgatg--tagc 118

                                                                       
Query: 638 ttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgtaacaa 697
           ||||||||||||||| |||||||||||||||||| |||| | |||||||| ||||||  |
Sbjct: 119 ttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgtaatga 178

                    
Query: 698 tatccattc 706
           |||||||||
Sbjct: 179 tatccattc 187
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>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial
           sequence
          Length = 3622

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                       
Query: 634 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 693
           ||||||||||||||||||| |||||||||||||||||| |||| | ||| || | |||||
Sbjct: 115 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacgtgcacttgta 174

                                           
Query: 694 acaatatccattccttcaaaacaacgagatgc 725
           |  |||||||||||| | ||||||||||||||
Sbjct: 175 atgatatccattcctgcgaaacaacgagatgc 206



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 62/71 (87%), Gaps = 2/71 (2%)
 Strand = Plus / Plus

                                                                       
Query: 522 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 580
           |||| |||||||||||||||||| |||  |||| ||||||| ||||| |||| | |||||
Sbjct: 2   cagcctgggatagcaaggatggatgtc-attttatcgtttgttttcgtccgtagtcggac 60

                      
Query: 581 cctgctcttct 591
           |||||||||||
Sbjct: 61  cctgctcttct 71
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>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial
           sequence
          Length = 3613

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                       
Query: 634 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 693
           ||||||||||||||||||| |||||||||||||||||| |||| | ||| || | |||||
Sbjct: 115 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacgtgcacttgta 174

                                           
Query: 694 acaatatccattccttcaaaacaacgagatgc 725
           |  |||||||||||| | ||||||||||||||
Sbjct: 175 atgatatccattcctgcgaaacaacgagatgc 206



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 62/71 (87%), Gaps = 2/71 (2%)
 Strand = Plus / Plus

                                                                       
Query: 522 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 580
           |||| |||||||||||||||||| |||  |||| ||||||| ||||| |||| | |||||
Sbjct: 2   cagcctgggatagcaaggatggatgtc-attttatcgtttgttttcgtccgtagtcggac 60

                      
Query: 581 cctgctcttct 591
           |||||||||||
Sbjct: 61  cctgctcttct 71
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>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7731

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                        
Query: 634  tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 693
            ||||||||||||||||||| |||||||||||||||||| |||| | |||||||| |||||
Sbjct: 4276 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgta 4335

                         
Query: 694  acaatatccattc 706
            |  ||||||||||
Sbjct: 4336 atgatatccattc 4348



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/91 (86%), Gaps = 3/91 (3%)
 Strand = Plus / Plus

                                                                        
Query: 502  taggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttctcgttt 561
            |||||||||||| |||| | |||| |||||||||||||||||| |||  |||| ||||||
Sbjct: 4144 taggatgggttccaggcgg-cagcctgggatagcaaggatggatgtc-attttatcgttt 4201

                                           
Query: 562  gatttcg-ccgttgccggaccctgctcttct 591
            | ||||| |||| | ||||||||||||||||
Sbjct: 4202 gttttcgtccgtagtcggaccctgctcttct 4232
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>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula,
           complete sequence
          Length = 3683

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                       
Query: 634 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 693
           ||||||||||||||||||| |||||||||||||||||| |||| | |||||||| |||||
Sbjct: 115 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgta 174

                        
Query: 694 acaatatccattc 706
           |  ||||||||||
Sbjct: 175 atgatatccattc 187
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>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial
           sequence
          Length = 3764

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                       
Query: 634 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 693
           ||||||||||||||||||| |||||||||||||||||| |||| | |||||||| |||||
Sbjct: 115 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgta 174

                        
Query: 694 acaatatccattc 706
           |  ||||||||||
Sbjct: 175 atgatatccattc 187
to top
>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial
           sequence
          Length = 3774

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                       
Query: 634 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 693
           ||||||||||||||||||| |||||||||||||||||| |||| | |||||||| |||||
Sbjct: 115 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgta 174

                        
Query: 694 acaatatccattc 706
           |  ||||||||||
Sbjct: 175 atgatatccattc 187
to top
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic
            sequence
          Length = 3124

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                        
Query: 634  tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 693
            ||||||||||||| ||||| |||||||||||||||| | ||||  ||||||||| |||||
Sbjct: 2379 tagcttgtggcgattgtaagccaattccatatactcttctcttcagtacatgtacttgta 2438

                                            
Query: 694  acaatatccattccttcaaaacaacgagatgc 725
            || |||||||||| | | |||| |||||||||
Sbjct: 2439 acgatatccattcttgcgaaacgacgagatgc 2470



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 87/100 (87%), Gaps = 3/100 (3%)
 Strand = Plus / Plus

                                                                        
Query: 501  ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgt--ttttctcg 558
            ||||||||||||| ||| || |||| ||||||||||||||||||||||||  |||| |||
Sbjct: 2245 ctaggatgggttccaggtcggcagcctgggatagcaaggatggacgtcgttcttttatcg 2304

                                                    
Query: 559  tttgatttcg-ccgttgccggaccctgctcttctacatgg 597
            |||| |||||  ||| | |||||||||||||||| |||||
Sbjct: 2305 tttgttttcgttcgtagtcggaccctgctcttcttcatgg 2344
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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 83/95 (87%), Gaps = 6/95 (6%)
 Strand = Plus / Plus

                                                                          
Query: 501    ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgt-----ttttc 555
              ||||||||||||| |||||| |||| ||||||||||||||||||||||||     |||||
Sbjct: 326999 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttcttttc 327058

                                                 
Query: 556    tcgtttgatttcg-ccgttgccggaccctgctctt 589
              ||||||| ||||| |||| | ||||||||||||||
Sbjct: 327059 tcgtttgttttcgtccgtagtcggaccctgctctt 327093



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                      
Query: 501    ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 556
              ||||||||||||| ||| || |||| ||||||||||||||||||||||||| ||||
Sbjct: 131399 ctaggatgggttccagggcggcagcctgggatagcaaggatggacgtcgttcttct 131454



 Score = 63.9 bits (32), Expect = 8e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                          
Query: 414    gtgaggattcattcgactacattggtttgtcttcttcatggattcattgttcttccaaac 473
              |||||||  ||||||||||| | |||| || ||||||| |||  |||| ||||||||| |
Sbjct: 177308 gtgaggacccattcgactacgtcggttcgtgttcttcacggagacattcttcttccaagc 177367

                                          
Query: 474    gggatcacaagcaagatgatcatttccc 501
              |||||| || ||||||||| ||||||||
Sbjct: 177368 gggatctcaggcaagatgaccatttccc 177395



 Score = 44.1 bits (22), Expect = 0.72
 Identities = 63/76 (82%), Gaps = 3/76 (3%)
 Strand = Plus / Plus

                                                                          
Query: 634    tagcttgtggcgagtgtaatccaattccatata---ctcatatcttttgtacatgtagtt 690
              ||||||||||||||||||| |||| || |||||   ||| | | ||  ||||||||| ||
Sbjct: 131531 tagcttgtggcgagtgtaagccaactctatatatatctcttcttttcagtacatgtactt 131590

                              
Query: 691    gtaacaatatccattc 706
              ||||| ||||||||||
Sbjct: 131591 gtaacgatatccattc 131606



 Score = 42.1 bits (21), Expect = 2.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 634    tagcttgtggcgagtgtaatccaattccatata 666
              ||||||||||||||||||| |||| || |||||
Sbjct: 327134 tagcttgtggcgagtgtaagccaactctatata 327166
to top
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial
             and complete sequences
          Length = 11820

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 83/96 (86%), Gaps = 7/96 (7%)
 Strand = Plus / Plus

                                                                         
Query: 501   ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcg------ttttt 554
             ||||||||||||| |||||| |||| |||||||||||||||||||||||      |||||
Sbjct: 11570 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttattttt 11629

                                                 
Query: 555   ctcgtttgatttcg-ccgttgccggaccctgctctt 589
             |||||||| ||||| |||| | ||||||||||||||
Sbjct: 11630 ctcgtttgttttcgtccgtagtcggaccctgctctt 11665



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 75/88 (85%)
 Strand = Plus / Plus

                                                                        
Query: 414  gtgaggattcattcgactacattggtttgtcttcttcatggattcattgttcttccaaac 473
            ||||||| || ||||||||| | |||| |||| ||||| |||  |||| ||||||||| |
Sbjct: 2586 gtgaggactcgttcgactacgtcggttcgtctgcttcacggaggcattcttcttccaagc 2645

                                        
Query: 474  gggatcacaagcaagatgatcatttccc 501
            |||||| || ||||||||||||||||||
Sbjct: 2646 gggatctcaggcaagatgatcatttccc 2673



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                    
Query: 501  ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 556
            ||||||||||||| |||||| |||| |||||||||||||||||| |||||| ||||
Sbjct: 4033 ctaggatgggttccaggccggcagcctgggatagcaaggatggatgtcgttcttct 4088



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 463   ttcttccaaacgggatcacaagcaagatgatcatttccc 501
             ||||||||| ||||||| || ||||||||||||||||||
Sbjct: 10166 ttcttccaagcgggatctcacgcaagatgatcatttccc 10204



 Score = 48.1 bits (24), Expect = 0.046
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 679   gtacatgtagttgtaacaatatccattc 706
             ||||||||| ||||||||||||||||||
Sbjct: 11755 gtacatgtacttgtaacaatatccattc 11782
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>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 82/94 (87%), Gaps = 5/94 (5%)
 Strand = Plus / Minus

                                                                         
Query: 501   ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgt----ttttct 556
             ||||||||||||| |||||| |||| ||||||||||||||||||||||||    ||||||
Sbjct: 37446 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgtttcattttct 37387

                                               
Query: 557   cgtttgatttcg-ccgttgccggaccctgctctt 589
             |||||| ||||| |||| | ||||||| ||||||
Sbjct: 37386 cgtttgttttcgtccgtagtcggaccccgctctt 37353



 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                         
Query: 425   ttcgactacattggtttgtcttcttcatggattcattgttcttccaaacgggatcacaag 484
             ||||||||| |  ||| |||| ||||| |||  |||| ||||||||| ||||||| || |
Sbjct: 38894 ttcgactacgtcagttcgtctgcttcacggaggcattcttcttccaagcgggatctcagg 38835

                              
Query: 485   caagatgatcatttccc 501
             |||||||||||||||||
Sbjct: 38834 caagatgatcatttccc 38818
to top
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
            locus region
          Length = 160897

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                    
Query: 501  ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 556
            ||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||
Sbjct: 3477 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 3422



 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 425  ttcgactacattggtttgtcttcttcatggattcattgttcttccaaacgggatcacaag 484
            ||||||||| | |||| |||| ||||| |||  |||| ||||||||| ||||||| || |
Sbjct: 4917 ttcgactacgtcggttcgtctgcttcacggaggcattcttcttccaagcgggatctcagg 4858

                             
Query: 485  caagatgatcatttccc 501
            ||||| |||||||||||
Sbjct: 4857 caagaggatcatttccc 4841
to top
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 501   ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 556
             ||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||
Sbjct: 68311 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 68256



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                         
Query: 425   ttcgactacattggtttgtcttcttcatggattcattgttcttccaaacgggatcacaag 484
             ||||||||| | |||| |||| ||||| |||  |||| ||||||||| ||||||| || |
Sbjct: 69746 ttcgactacgtcggttcgtctgcttcacggaggcattcttcttccaagcgggatctcagg 69687

                              
Query: 485   caagatgatcatttccc 501
             |||||||||||||||||
Sbjct: 69686 caagatgatcatttccc 69670
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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 501   ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 556
             ||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||
Sbjct: 65007 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 64952
to top
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                      
Query: 501    ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 556
              ||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||
Sbjct: 102939 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 102884



 Score = 48.1 bits (24), Expect = 0.046
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                          
Query: 425    ttcgactacattggtttgtcttcttcatggattcattgttcttccaaacgggatcacaag 484
              ||||||||| | |||| |||| ||||| ||| |  || ||||||||  ||||||| || |
Sbjct: 104398 ttcgactacgtcggttcgtctgcttcacggagttgttcttcttccaggcgggatctcagg 104339

                                  
Query: 485    caagatgatcatttccctag 504
              |||||||||||||| |||||
Sbjct: 104338 caagatgatcattttcctag 104319
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>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
             sequence
          Length = 113510

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 501   ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 556
             ||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||
Sbjct: 16537 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 16482



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 458   cattgttcttccaaacgggatcacaagcaagatgatcatttccc 501
             |||| ||||||||| ||||||| || ||||||||||||||||||
Sbjct: 17943 cattcttcttccaagcgggatctcaggcaagatgatcatttccc 17900
to top
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement
          Length = 13271

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                     
Query: 501   ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 556
             ||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||
Sbjct: 10393 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 10448



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 65/78 (83%), Gaps = 5/78 (6%)
 Strand = Plus / Plus

                                                                         
Query: 634   tagcttgtggcgagtgtaatccaattccatata-----ctcatatcttttgtacatgtag 688
             ||||||||||||||||||| ||||||| |||||     ||||| | ||  ||||||||| 
Sbjct: 10528 tagcttgtggcgagtgtaagccaattcaatatatatatctcatcttttcagtacatgtac 10587

                               
Query: 689   ttgtaacaatatccattc 706
             ||||||| ||||||||||
Sbjct: 10588 ttgtaacgatatccattc 10605
to top
>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement
            BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR
            sequence
          Length = 3130

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                    
Query: 501  ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 556
            ||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||
Sbjct: 2836 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 2891



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 65/78 (83%), Gaps = 5/78 (6%)
 Strand = Plus / Plus

                                                                        
Query: 634  tagcttgtggcgagtgtaatccaattccatata-----ctcatatcttttgtacatgtag 688
            ||||||||||||||||||| ||||||| |||||     ||||| | ||  ||||||||| 
Sbjct: 2971 tagcttgtggcgagtgtaagccaattcaatatatatatctcatcttttcagtacatgtac 3030

                              
Query: 689  ttgtaacaatatccattc 706
            ||||||| ||||||||||
Sbjct: 3031 ttgtaacgatatccattc 3048
to top
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal
            repeat, complete sequence
          Length = 7575

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 75/88 (85%)
 Strand = Plus / Plus

                                                                        
Query: 414  gtgaggattcattcgactacattggtttgtcttcttcatggattcattgttcttccaaac 473
            ||||||| || ||||||||| | |||| |||| ||||| |||  |||| ||||||||| |
Sbjct: 2586 gtgaggactcgttcgactacgtcggttcgtctgcttcacggaggcattcttcttccaagc 2645

                                        
Query: 474  gggatcacaagcaagatgatcatttccc 501
            |||||| || ||||||||||||||||||
Sbjct: 2646 gggatctcaggcaagatgatcatttccc 2673



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                    
Query: 501  ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 556
            ||||||||||||| |||||| |||| |||||||||||||||||| |||||| ||||
Sbjct: 4033 ctaggatgggttccaggccggcagcctgggatagcaaggatggatgtcgttcttct 4088
to top
>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene,
            complete cds
          Length = 6561

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 501  ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 556
            ||||||||||||| || ||| |||| ||||||||||||||||||||||||| ||||
Sbjct: 2709 ctaggatgggttccagaccggcagcctgggatagcaaggatggacgtcgttcttct 2654
to top
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                        
Query: 414  gtgaggattcattcgactacattggtttgtcttcttcatggattcattgttcttccaaac 473
            |||||||||| |||||||||||  |||||||||||||||||| || || |||||||   |
Sbjct: 1220 gtgaggattcgttcgactacatctgtttgtcttcttcatggactcgttcttcttccttgc 1161

                                   
Query: 474  gggatcacaagcaagatgatcat 496
            |||||| |  |||||||||||||
Sbjct: 1160 gggatctcgggcaagatgatcat 1138



 Score = 48.1 bits (24), Expect = 0.046
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 414  gtgaggattcattcgactacattggtttgtcttcttcatggattcattgttcttcc 469
            |||||||||| |||||||||||  | ||||| |||||||||| || || |||||||
Sbjct: 8810 gtgaggattcgttcgactacatccgcttgtcctcttcatggactcgttcttcttcc 8755
to top
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
             intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
             complete cds
          Length = 65979

 Score = 63.9 bits (32), Expect = 8e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                     
Query: 501   ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 556
             ||||||||||||| |||||| || | | ||||||||||||||||||||||| ||||
Sbjct: 10912 ctaggatgggttccaggccggcaccctcggatagcaaggatggacgtcgttcttct 10967



 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                        
Query: 425  ttcgactacattggtttgtcttcttcatggattcattgttcttccaaacgggatcacaag 484
            ||||||||| | |||| |||| ||||| |||  ||||  |||||||| ||||||| || |
Sbjct: 9480 ttcgactacgtcggttcgtctgcttcacggaggcattcctcttccaagcgggatctcagg 9539

                             
Query: 485  caagatgatcatttccc 501
            |||||||||||||||||
Sbjct: 9540 caagatgatcatttccc 9556
to top
>gb|DQ663708.1| Brachypodium distachyon Sukkula retrotransposon, partial sequence
          Length = 325

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 522 cagcttgggatagcaaggatggacgtcgtttttct 556
           |||| ||||||||||||||||||||||||| ||||
Sbjct: 2   cagcctgggatagcaaggatggacgtcgttcttct 36
to top
>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7919

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                        
Query: 414  gtgaggattcattcgactacattggtttgtcttcttcatggattcattgttcttccaaac 473
            |||||||||| |||||| || |||| |  ||||||||||||| || || ||||||| | |
Sbjct: 2804 gtgaggattcgttcgacaacgttggctcatcttcttcatggaatcgttcttcttccgagc 2863

                               
Query: 474  gggatcacaagcaagatga 492
            |||||| || |||||||||
Sbjct: 2864 gggatctcaggcaagatga 2882



 Score = 50.1 bits (25), Expect = 0.012
 Identities = 76/89 (85%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                        
Query: 502  taggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttctcgttt 561
            |||||||| |||||||| | |||| | |||||||||||||||| |||  |||| | ||||
Sbjct: 4256 taggatggattctaggcgg-cagcctaggatagcaaggatggatgtc-attttattgttt 4313

                                         
Query: 562  gatttcg-ccgttgccggaccctgctctt 589
            ||||||| |||| | ||||||||||||||
Sbjct: 4314 gatttcgtccgtagtcggaccctgctctt 4342
to top
>gb|AF029897.1|AF029897 Triticum aestivum acetyl-coenzyme A carboxylase (Acc-1,1) gene,
            nuclear gene encoding plastid protein, partial cds
          Length = 9285

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 65/77 (84%), Gaps = 2/77 (2%)
 Strand = Plus / Plus

                                                                        
Query: 418  ggattcattcgactacattggtttgt--cttcttcatggattcattgttcttccaaacgg 475
            |||||| ||||||||| || ||||||  |||||||||||| ||||| |||||||   |||
Sbjct: 926  ggattcgttcgactacgttcgtttgtttcttcttcatggactcattcttcttccttgcgg 985

                             
Query: 476  gatcacaagcaagatga 492
            |||| || |||||||||
Sbjct: 986  gatctcaggcaagatga 1002
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>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score = 48.1 bits (24), Expect = 0.046
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 414   gtgaggattcattcgactacattggtttgtcttcttcatggattcattgttcttcc 469
             |||||||| ||||||||||| |  |||||||| ||||||||| || || |||||||
Sbjct: 73347 gtgaggatccattcgactacgtccgtttgtctacttcatggactcgttcttcttcc 73402
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>emb|AL162388.8| Human DNA sequence from clone RP11-373A6 on chromosome 9 Contains a NHP2
              non-histone chromosome protein 2-like 1 (S. cerevisiae)
              (NHP2L1) pseudogene and 2 CpG islands, complete sequence
          Length = 173881

 Score = 48.1 bits (24), Expect = 0.046
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 435    ttggtttgtcttcttcatggattc 458
              ||||||||||||||||||||||||
Sbjct: 108417 ttggtttgtcttcttcatggattc 108440
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>gb|DQ663707.1| Brachypodium distachyon Sukkula retrotransposon, partial sequence
          Length = 324

 Score = 46.1 bits (23), Expect = 0.18
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 522 cagcttgggatagcaaggatggacgtc 548
           |||| ||||||||||||||||||||||
Sbjct: 2   cagcctgggatagcaaggatggacgtc 28
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>emb|CT009586.1| Triticum aestivum
          Length = 107638

 Score = 46.1 bits (23), Expect = 0.18
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 438   gtttgtcttcttcatggattcattgttcttccaaacgggatcacaagcaagatgatcat 496
             |||||||||||||||||| || || |||||||   ||||||  || |||||||||||||
Sbjct: 88327 gtttgtcttcttcatggactcgttcttcttccttgcgggatttcaggcaagatgatcat 88385



 Score = 46.1 bits (23), Expect = 0.18
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 438   gtttgtcttcttcatggattcattgttcttccaaacgggatcacaagcaagatgatcat 496
             |||||||||||||||||| || || |||||||   ||||||  || |||||||||||||
Sbjct: 96106 gtttgtcttcttcatggactcgttcttcttccttgcgggatttcaggcaagatgatcat 96164
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>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon,
           partial sequence
          Length = 4001

 Score = 46.1 bits (23), Expect = 0.18
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 522 cagcttgggatagcaaggatggacgtcgttt 552
           |||| |||||||||||||||||| |||||||
Sbjct: 2   cagcctgggatagcaaggatggatgtcgttt 32
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>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula
           retrotransposon, partial sequence
          Length = 3935

 Score = 46.1 bits (23), Expect = 0.18
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 522 cagcttgggatagcaaggatggacgtcgttt 552
           |||| |||||||||||||||||| |||||||
Sbjct: 2   cagcctgggatagcaaggatggatgtcgttt 32
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>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial
           sequence
          Length = 3997

 Score = 46.1 bits (23), Expect = 0.18
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 522 cagcttgggatagcaaggatggacgtcgttt 552
           |||| |||||||||||||||||| |||||||
Sbjct: 2   cagcctgggatagcaaggatggatgtcgttt 32
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>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial
           sequence
          Length = 4120

 Score = 46.1 bits (23), Expect = 0.18
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 522 cagcttgggatagcaaggatggacgtcgttt 552
           |||| |||||||||||||||||| |||||||
Sbjct: 2   cagcctgggatagcaaggatggatgtcgttt 32
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>gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, complete sequence
          Length = 168316

 Score = 44.1 bits (22), Expect = 0.72
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 94    catttttctcttccctcttcct 115
             ||||||||||||||||||||||
Sbjct: 13853 catttttctcttccctcttcct 13832
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>gb|AC093339.17| Mus musculus chromosome 19, clone RP23-5G6, complete sequence
          Length = 218747

 Score = 44.1 bits (22), Expect = 0.72
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 96    tttttctcttccctcttcctcc 117
             ||||||||||||||||||||||
Sbjct: 16058 tttttctcttccctcttcctcc 16079
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>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial
           sequence
          Length = 2924

 Score = 44.1 bits (22), Expect = 0.72
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 522 cagcttgggatagcaaggatggacgtcgtt 551
           |||| |||||||||||||||||| ||||||
Sbjct: 2   cagcctgggatagcaaggatggatgtcgtt 31
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>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial
           sequence
          Length = 2923

 Score = 44.1 bits (22), Expect = 0.72
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 522 cagcttgggatagcaaggatggacgtcgtt 551
           |||| |||||||||||||||||| ||||||
Sbjct: 2   cagcctgggatagcaaggatggatgtcgtt 31
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>gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, complete sequence
          Length = 167209

 Score = 44.1 bits (22), Expect = 0.72
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 94     catttttctcttccctcttcct 115
              ||||||||||||||||||||||
Sbjct: 127481 catttttctcttccctcttcct 127502
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>emb|AL441989.13| Human DNA sequence from clone RP11-360A18 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 105068

 Score = 44.1 bits (22), Expect = 0.72
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 89    cctgtcatttttctcttccctcttcctccc 118
             ||||||||| |||||||||||| |||||||
Sbjct: 58128 cctgtcattcttctcttccctcctcctccc 58157
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>gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, complete sequence
          Length = 201229

 Score = 44.1 bits (22), Expect = 0.72
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 96    tttttctcttccctcttcctcc 117
             ||||||||||||||||||||||
Sbjct: 14030 tttttctcttccctcttcctcc 14009
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>emb|AL807758.5| Mouse DNA sequence from clone RP23-469A1 on chromosome X, complete
              sequence
          Length = 169053

 Score = 44.1 bits (22), Expect = 0.72
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 104    ttccctcttcctccccctgctc 125
              ||||||||||||||||||||||
Sbjct: 114576 ttccctcttcctccccctgctc 114555
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>gb|CP000471.1| Magnetococcus sp. MC-1, complete genome
          Length = 4719581

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 579     accctgctcttctacatggtg 599
               |||||||||||||||||||||
Sbjct: 2584916 accctgctcttctacatggtg 2584936
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>gb|AC122364.4| Mus musculus chromosome 8 clone RP23-442K12, complete sequence
          Length = 193183

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   ctcttccctcttcctccccct 121
             |||||||||||||||||||||
Sbjct: 77519 ctcttccctcttcctccccct 77539
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>gb|BC061083.1| Mus musculus chymotrypsinogen B1, mRNA (cDNA clone MGC:74198
           IMAGE:30316047), complete cds
          Length = 909

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 ctcttccctcttcctccccct 121
           |||||||||||||||||||||
Sbjct: 826 ctcttccctcttcctccccct 846
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>gb|AC139377.4| Mus musculus chromosome 5 clone RP24-291G12, complete sequence
          Length = 191100

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   ctcttccctcttcctccccct 121
             |||||||||||||||||||||
Sbjct: 87579 ctcttccctcttcctccccct 87599
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>gb|AC137871.18| Mus musculus chromosome 15, clone RP23-41B9, complete sequence
          Length = 223529

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 97     ttttctcttccctcttcctccccct 121
              ||||||||||||||| |||||||||
Sbjct: 139044 ttttctcttccctctccctccccct 139020
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>dbj|AK098303.1| Homo sapiens cDNA FLJ40984 fis
          Length = 2309

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 100 tctcttccctcttcctccccc 120
           |||||||||||||||||||||
Sbjct: 252 tctcttccctcttcctccccc 232
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>dbj|AK098288.1| Homo sapiens cDNA FLJ40969 fis, clone UTERU2012688
          Length = 2309

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 100 tctcttccctcttcctccccc 120
           |||||||||||||||||||||
Sbjct: 252 tctcttccctcttcctccccc 232
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>dbj|AK003079.1| Mus musculus adult male spleen cDNA, RIKEN full-length enriched
           library, clone:0910001J16 product:CHYMOTRYPSINOGEN B
           PRECURSOR (EC 3.4.21.1) homolog [Rattus norvegicus],
           full insert sequence
          Length = 877

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 ctcttccctcttcctccccct 121
           |||||||||||||||||||||
Sbjct: 827 ctcttccctcttcctccccct 847
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>ref|NM_025583.1| Mus musculus chymotrypsinogen B1 (Ctrb1), mRNA
 dbj|AK003060.1| Mus musculus adult male spleen cDNA, RIKEN full-length enriched
           library, clone:0910001A15 product:CHYMOTRYPSINOGEN B
           PRECURSOR (EC 3.4.21.1) homolog [Rattus norvegicus],
           full insert sequence
          Length = 885

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 ctcttccctcttcctccccct 121
           |||||||||||||||||||||
Sbjct: 835 ctcttccctcttcctccccct 855
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>dbj|AK008927.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched
           library, clone:2210414J01 product:CHYMOTRYPSINOGEN B
           PRECURSOR (EC 3.4.21.1) homolog [Rattus norvegicus],
           full insert sequence
          Length = 877

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 ctcttccctcttcctccccct 121
           |||||||||||||||||||||
Sbjct: 827 ctcttccctcttcctccccct 847
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>dbj|AK008888.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched
           library, clone:2210410N24 product:CHYMOTRYPSINOGEN B
           PRECURSOR (EC 3.4.21.1) homolog [Rattus norvegicus],
           full insert sequence
          Length = 879

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 ctcttccctcttcctccccct 121
           |||||||||||||||||||||
Sbjct: 827 ctcttccctcttcctccccct 847
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>dbj|AK008729.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched
           library, clone:2210015C24 product:CHYMOTRYPSINOGEN B
           PRECURSOR (EC 3.4.21.1) homolog [Rattus norvegicus],
           full insert sequence
          Length = 877

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 ctcttccctcttcctccccct 121
           |||||||||||||||||||||
Sbjct: 827 ctcttccctcttcctccccct 847
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>dbj|AK008644.2| Mus musculus adult male stomach cDNA, RIKEN full-length enriched
           library, clone:2200008D09 product:CHYMOTRYPSINOGEN B
           PRECURSOR (EC 3.4.21.1) homolog [Rattus norvegicus],
           full insert sequence
          Length = 891

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 ctcttccctcttcctccccct 121
           |||||||||||||||||||||
Sbjct: 827 ctcttccctcttcctccccct 847
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>dbj|AK018554.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030613K09 product:CHYMOTRYPSINOGEN B
           PRECURSOR (EC 3.4.21.1) homolog [Rattus norvegicus],
           full insert sequence
          Length = 876

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 ctcttccctcttcctccccct 121
           |||||||||||||||||||||
Sbjct: 826 ctcttccctcttcctccccct 846
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>dbj|AK007815.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length
           enriched library, clone:1810047N05
           product:CHYMOTRYPSINOGEN B PRECURSOR (EC 3.4.21.1)
           homolog [Rattus norvegicus], full insert sequence
          Length = 877

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 ctcttccctcttcctccccct 121
           |||||||||||||||||||||
Sbjct: 827 ctcttccctcttcctccccct 847
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>dbj|AK007765.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length
           enriched library, clone:1810044A17
           product:CHYMOTRYPSINOGEN B PRECURSOR (EC 3.4.21.1)
           homolog [Rattus norvegicus], full insert sequence
          Length = 876

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 ctcttccctcttcctccccct 121
           |||||||||||||||||||||
Sbjct: 826 ctcttccctcttcctccccct 846
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>dbj|AK007566.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length
           enriched library, clone:1810020L03
           product:CHYMOTRYPSINOGEN B PRECURSOR (EC 3.4.21.1)
           homolog [Rattus norvegicus], full insert sequence
          Length = 876

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 ctcttccctcttcctccccct 121
           |||||||||||||||||||||
Sbjct: 826 ctcttccctcttcctccccct 846
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>emb|AL138914.9| Human DNA sequence from clone RP11-15L1 on chromosome 13 Contains part
             of a novel gene, complete sequence
          Length = 153439

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 680   tacatgtagttgtaacaatat 700
             |||||||||||||||||||||
Sbjct: 61720 tacatgtagttgtaacaatat 61700
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>emb|AL031661.28|HS404H4 Human DNA sequence from clone RP3-404H4 on chromosome 20q12-13.13
              Contains STSs and GSSs, complete sequence
          Length = 155867

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     atttttctcttccctcttcct 115
              |||||||||||||||||||||
Sbjct: 125144 atttttctcttccctcttcct 125124
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>emb|AL034419.22|HS1108D11 Human DNA sequence from clone RP5-1108D11 on chromosome 20q12-13.11
              Contains the 3' end of the JPH2 gene for junctophilin 2
              (JP2, JP-2), the 3' end of the C20orf100 gene for a novel
              HMG (high mobility group) box protein similar to KIAA0737,
              KIAA0808 and TNRC9 (CAGF9) and two CpG islands, complete
              sequence
          Length = 152209

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 100    tctcttccctcttcctccccc 120
              |||||||||||||||||||||
Sbjct: 102419 tctcttccctcttcctccccc 102439
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>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
          Length = 1308759

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 375    tgattttttcttcttaataga 395
              |||||||||||||||||||||
Sbjct: 972398 tgattttttcttcttaataga 972378
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>gb|AC116609.6| Homo sapiens BAC clone RP13-539J13 from 2, complete sequence
          Length = 131423

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 377   attttttcttcttaatagagt 397
             |||||||||||||||||||||
Sbjct: 39367 attttttcttcttaatagagt 39387
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>emb|AJ331782.1|HSA331782 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-ZF5RS
          Length = 846

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 96  tttttctcttccctcttcctccccc 120
           ||||| |||||||||||||||||||
Sbjct: 585 tttttgtcttccctcttcctccccc 609
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>emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in linkage group 7,
             complete sequence
          Length = 168607

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 96    tttttctcttccctcttcctc 116
             |||||||||||||||||||||
Sbjct: 33966 tttttctcttccctcttcctc 33946
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>emb|AL837522.8| Mouse DNA sequence from clone RP23-264L10 on chromosome 4, complete
             sequence
          Length = 128976

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 96    tttttctcttccctcttcctc 116
             |||||||||||||||||||||
Sbjct: 83069 tttttctcttccctcttcctc 83089
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>gb|AC170761.3| Rhesus Macaque CHR5 BAC CH250-342J4 (Children's Hospital Oakland
             Research Institute Rhesus macaque Adult Male BAC Library)
             complete sequence
          Length = 160607

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 93    tcatttttctcttccctcttcctcc 117
             ||||||||||| |||||||||||||
Sbjct: 22934 tcatttttctcctccctcttcctcc 22958


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 132,457,696
Number of extensions: 7333334
Number of successful extensions: 148129
Number of sequences better than 10.0: 74
Number of HSP's gapped: 148109
Number of HSP's successfully gapped: 110
Length of query: 754
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 732
Effective length of database: 18,508,616,841
Effective search space: 13548307527612
Effective search space used: 13548307527612
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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