>LOC_Os02g51790:12002.t04760:unspliced-genomic 50S ribosomal protein L29, chloroplast precursor, putative,|
           expressed
          Length = 2779
 Score =  123 bits (263), Expect(5) = 6e-51
 Identities = 55/64 (85%), Positives = 58/64 (90%)
 Frame = +1 / +3

                                                                       
Query: 1   AAVVRMAKREQELEEIRAMEMENLEQEVVDLKGELFLLRLKRSARQEFKSSEFGRMRKRV 180
           AAV RMAKREQELEEIRAM  E +E+EVVDLKGELF+LRLKRSARQEFKSSEFGRMRKRV
Sbjct: 216 AAVARMAKREQELEEIRAMPTEKIEEEVVDLKGELFMLRLKRSARQEFKSSEFGRMRKRV 395

               
Query: 181 ARLL 192
             LL
Sbjct: 396 CLLL 407



 Score = 84.9 bits (179), Expect(5) = 6e-51
 Identities = 35/43 (81%), Positives = 39/43 (90%)
 Frame = +1 / +2

                                                       
Query: 175  RVARLLTVRREREIEQGINKRNSRKLDRKWKLGIVVGPPPSLR 303
            ++AR+LTV+REREIEQGINKR SRKLDRKWK  IVV PPPSLR
Sbjct: 1331 QIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLR 1459



 Score = 27.2 bits (53), Expect(5) = 6e-51
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2 / +2

                             
Query: 494  CSYVIDI*NCMKGAYAI 544
            C+Y+ DI*NC    YAI
Sbjct: 1685 CTYITDI*NCA*RVYAI 1735



 Score = 24.9 bits (48), Expect(5) = 6e-51
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1 / +1

                             
Query: 400  FQVLDVKTRTSVAIFVC 450
            FQVL VKT++S+   +C
Sbjct: 1597 FQVLAVKTKSSITNSIC 1647



 Score = 23.5 bits (45), Expect(5) = 6e-51
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1 / +2

                      
Query: 358  FTPHNGLFCN 387
            F P+NGL CN
Sbjct: 1553 FIPYNGLICN 1582



 Score = 84.0 bits (177), Expect(2) = 6e-24
 Identities = 34/42 (80%), Positives = 35/42 (83%)
 Frame = -1 / -1

                                                      
Query: 303  P*RRWWSNHNAQLPFPVKLPRISFVDSLFNFPFSSHSQQTSN 178
            P*R WWSNH+A LPFPVKLPR S VDSLFNFPFS  SQ TSN
Sbjct: 1459 P*RWWWSNHDALLPFPVKLPRQSLVDSLFNFPFSFDSQHTSN 1334



 Score = 50.1 bits (103), Expect(2) = 6e-24
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = -2 / -1

                                 
Query: 191 SRRATLLRMRPNSLDLNSWRAE 126
           S+R TLLRMRPNSLDLNSWRAE
Sbjct: 406 SKRHTLLRMRPNSLDLNSWRAE 341



 Score = 83.1 bits (175), Expect(3) = 2e-20
 Identities = 36/51 (70%), Positives = 43/51 (84%)
 Frame = +3 / +1

                                                               
Query: 180  CSSADCEKRKGN*TRNQQKKF*EA*QEMEAGHCGWTTTVSKGEEGRLENNK 332
            CS ADC+KR GN*TRNQQ+  *EA*QEMEA H G TTT+SKGE+G +E++K
Sbjct: 1336 CSYADCQKRTGN*TRNQQEIV*EA*QEMEAKHRG*TTTISKGEQGGIESHK 1488



 Score = 34.5 bits (69), Expect(3) = 2e-20
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +3 / +2

                          
Query: 141 VQVQRVRPHAQEGCS 185
           VQ+QRVRPHAQEG S
Sbjct: 356 VQIQRVRPHAQEGMS 400



 Score = 24.9 bits (48), Expect(3) = 2e-20
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1 / +1

                              
Query: 505  Y*HMKLHERSLCYSVINT 558
            Y*+MKL   S+CY+++ T
Sbjct: 1696 Y*YMKLCLTSVCYTLVET 1749



 Score = 62.0 bits (129), Expect(2) = 6e-13
 Identities = 30/40 (75%), Positives = 31/40 (77%)
 Frame = -3 / -3

                                                    
Query: 298  ETVVVQPQCPASISCQAS*NFFC*FLVQFPFLFSQSADEQ 179
            E VVV P+C ASISCQAS*   C*FLVQFP LF QSA EQ
Sbjct: 1454 EMVVV*PRCFASISCQAS*TISC*FLVQFPVLF*QSAYEQ 1335



 Score = 35.0 bits (70), Expect(2) = 6e-13
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -3 / -2

                        
Query: 178 PSCACGRTRWT*T 140
           PSCACGRTRW *T
Sbjct: 393 PSCACGRTRWI*T 355



 Score = 53.3 bits (110), Expect = 1e-06
 Identities = 24/42 (57%), Positives = 26/42 (61%)
 Frame = +2 / +3

                                                      
Query: 179  LLVCXXXXXXXXXXXXSTKEILGSLTGNGSWALWLDHHRL*G 304
            LLVC            ST++ LGSLTGNGS A WLDHH L*G
Sbjct: 1335 LLVC*LSKENGKLNKESTRDCLGSLTGNGSKASWLDHHHL*G 1460

>LOC_Os04g32020:12004.t02882:unspliced-genomic 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor,|
           putative, expressed
          Length = 6847

 Score = 31.8 bits (63), Expect = 4.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1 / -3

                                                  
Query: 157 FGRMRKRVARLLTVRREREIEQGINKRNSRKLDRKWKLG 273
           FGR RK   R L   RERE E+   K+   + D+  +LG
Sbjct: 134 FGRRRKGGGRRLVGERERERERERRKKKGSRNDKGERLG 18

>LOC_Os01g67530:12001.t06110:unspliced-genomic 4-coumarate--CoA ligase 2, putative, expressed|
          Length = 3771

 Score = 25.4 bits (49), Expect(3) = 6.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1 / +2

                          
Query: 511  HMKLHERSLCYSVI 552
            H+KL+ERS  YS+I
Sbjct: 3269 HIKLYERSFQYSII 3310



 Score = 23.1 bits (44), Expect(3) = 6.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2 / +1

                                
Query: 449  VNLSFI*NSCHFFLCCSYVI 508
            +NL   * +CH  LC  +++
Sbjct: 2965 INLHIF*GACHNHLCFFFIL 3024



 Score = 22.1 bits (42), Expect(3) = 6.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2 / +2

                            
Query: 245 GSLTGNGSWALWLDHHR 295
           G   G+G  AL + HHR
Sbjct: 596 GEAIGHGGGALLVGHHR 646

>LOC_Os03g57580:12003.t05708:unspliced-genomic expressed protein|
          Length = 3376

 Score = 24.4 bits (47), Expect(2) = 9.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1 / -3

                                     
Query: 196 VRREREIEQGINKRNSRKLDRKWKLG 273
           +RRE  IE G         DR W++G
Sbjct: 143 LRRETRIEHGTTISVREDGDRPWRMG 66



 Score = 23.1 bits (44), Expect(2) = 9.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3 / -1

                                 
Query: 150 QRVRPHAQEGCSSADCEKRKGN 215
           +R R   + GC+S  C++R+G+
Sbjct: 187 ERSRGGGRCGCASDFCDERRGS 122


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 152,181,780
Number of extensions: 1743101
Number of successful extensions: 6643
Number of sequences better than 10.0: 4
Length of query: 193
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 145
Effective length of database: 52,912,542
Effective search space: 7672318590
Effective search space used: 7672318590
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)