>Q6Z8K4:MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3 precursor - Oryza sativa|
           subsp. japonica (Rice)
          Length = 119
 Score =  219 bits (558), Expect = 1e-56
 Identities = 105/119 (88%), Positives = 115/119 (96%), Gaps = 1/119 (0%)
 Frame = +1

Query: 280 MAGGKEPIEVKFRLFDGTDIGPNKYDPATTVTALKEFVLARWPQDKDIVPKTLNDVKLIN 459
           MAGGKEPIEVKFRLFDGTDIGP+KYDP+TTV+ALKEF+LARWPQDK+I PKT+ND+KLIN
Sbjct: 1   MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLIN 60

Query: 460 AGRILENNKTLAESRVPVGEVPGGVITMHVVVRPPQSDK-SDKHLSNSPKQNRCGCTIL 633
           AGRILENN+TLAESRVPVGEVPGGVITMHVVVRPPQ DK S+K L+NSPKQNRCGCTIL
Sbjct: 61  AGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119

>Q8GWJ6:MUB6_ARATH Membrane-anchored ubiquitin-fold protein 6 precursor - Arabidopsis|
           thaliana (Mouse-ear cress)
          Length = 119

 Score =  152 bits (384), Expect = 2e-36
 Identities = 73/119 (61%), Positives = 98/119 (82%), Gaps = 1/119 (0%)
 Frame = +1

Query: 280 MAGGKEPIEVKFRLFDGTDIGPNKYDPATTVTALKEFVLARWPQDKDIVPKTLNDVKLIN 459
           MAG ++ IE+KFRL DGTDIGP+KY+ + TV++LKE ++++WP+DK+  PKT+ND+KLIN
Sbjct: 1   MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60

Query: 460 AGRILENNKTLAESRVPVGEVPGGVITMHVVVRPPQSDKSDKHLSNS-PKQNRCGCTIL 633
           AG+ILENN+TLAESR+PV E+PG +ITMH+V+R P  DK  + L N  P +NRC CTIL
Sbjct: 61  AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQNDPPMKNRCVCTIL 119

>Q67UI2:MUB2_ORYSJ Membrane-anchored ubiquitin-fold protein 2 precursor - Oryza sativa|
           subsp. japonica (Rice)
          Length = 126

 Score =  143 bits (361), Expect = 1e-33
 Identities = 73/123 (59%), Positives = 91/123 (73%), Gaps = 2/123 (1%)
 Frame = +1

Query: 271 GAEMAGGKEPIEVKFRLFDGTDIGPNKYDPATTVTALKEFVLARWPQDKDIVPKTLNDVK 450
           G    GG E +EV+FRL DG+DIGP+ +D ATTVTALKEFVLARWPQ K+I P+T+NDV 
Sbjct: 4   GGGGGGGMEAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVT 63

Query: 451 LINAGRILENNKTLAESRVPVGEVPGGVITMHVVVRPPQSDKSDKH--LSNSPKQNRCGC 624
           +INAG++LENN+TLAESR    E P G ITMHVVVR  + ++  K    +  P++  CGC
Sbjct: 64  IINAGQVLENNRTLAESRNLAAESPEGPITMHVVVRRSRPERRVKQPPKARPPERIGCGC 123

Query: 625 TIL 633
           TIL
Sbjct: 124 TIL 126

>Q75GT2:MUB1_ORYSJ Membrane-anchored ubiquitin-fold protein 1 precursor - Oryza sativa|
           subsp. japonica (Rice)
          Length = 119

 Score =  137 bits (345), Expect = 7e-32
 Identities = 69/120 (57%), Positives = 93/120 (77%), Gaps = 2/120 (1%)
 Frame = +1

Query: 280 MAGG-KEPIEVKFRLFDGTDIGPNKYDPATTVTALKEFVLARWPQDKDIVPKTLNDVKLI 456
           M+GG +E  E+KFRL DGTDIGP +Y  A+TV  LKE ++A+WP+DK+  P+T+ND+KLI
Sbjct: 1   MSGGVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLI 60

Query: 457 NAGRILENNKTLAESRVPVGEVPGGVITMHVVVRPPQSDK-SDKHLSNSPKQNRCGCTIL 633
           NAG+ILENNKTL+E + P+ +   G+ TMHVVVR P SDK S+K ++  PK  RCGC+I+
Sbjct: 61  NAGKILENNKTLSECKSPICDF-SGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119

>Q7XRU4:MUB4_ORYSJ Membrane-anchored ubiquitin-fold protein 4 precursor - Oryza sativa|
           subsp. japonica (Rice)
          Length = 135

 Score =  136 bits (342), Expect = 2e-31
 Identities = 73/127 (57%), Positives = 90/127 (70%), Gaps = 2/127 (1%)
 Frame = +1

Query: 259 AIRPGAEMAGGKEPIEVKFRLFDGTDIGPNKYDP-ATTVTALKEFVLARWPQDKDIVPKT 435
           A   GAE A   E +EVKFRLFDG+DIGP + +  ATTV ALK+ V+A WP+DK IVPKT
Sbjct: 10  AAEGGAE-AEADEEVEVKFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKT 68

Query: 436 LNDVKLINAGRILENNKTLAESRVPVGEVPGGVITMHVVVRPPQS-DKSDKHLSNSPKQN 612
            NDVKLI+ G+ILEN+K +A+ R P G++P   ITMHVVV+P  +  K DK  +  PK  
Sbjct: 69  ANDVKLISGGKILENDKNIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPDKKTNKLPKTT 128

Query: 613 RCGCTIL 633
           RC CTIL
Sbjct: 129 RCSCTIL 135

>Q9SH14:MUB5_ARATH Membrane-anchored ubiquitin-fold protein 5 precursor - Arabidopsis|
           thaliana (Mouse-ear cress)
          Length = 120

 Score =  135 bits (340), Expect = 3e-31
 Identities = 66/119 (55%), Positives = 90/119 (75%), Gaps = 3/119 (2%)
 Frame = +1

Query: 286 GGKEPIEVKFRLFDGTDIGPNKYDPATTVTALKEFVLARWPQDKDIVPKTLNDVKLINAG 465
           G ++ IE+KFRL DGTDIGP+KY    TV +LKE ++A+WP+DK+  PK +N+VKLIN G
Sbjct: 2   GDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGG 61

Query: 466 RILENNKTLAESR--VPVGEVPGGVITMHVVVRPPQSDKSDKHLSNS-PKQNRCGCTIL 633
           +ILENNKTL+E+R  + +GE+PG V TMHVV+RPP  +K  + L N  P+++ C C IL
Sbjct: 62  KILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCIL 120

>Q9SW27:MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3 precursor - Arabidopsis|
           thaliana (Mouse-ear cress)
          Length = 118

 Score =  127 bits (319), Expect = 7e-29
 Identities = 59/115 (51%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
 Frame = +1

Query: 292 KEPIEVKFRLFDGTDIGPNKYDPATTVTALKEFVLARWPQDKDIVPKTLNDVKLINAGRI 471
           +E I++KFRL+DG+DIGP +Y  A+TV  LK+ V++ WP+ K +VPK +N+VKLI++G+I
Sbjct: 4   EESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKI 63

Query: 472 LENNKTLAESRVPVGEVPGGVITMHVVVRPP-QSDKSDKHLSNSPKQNRCGCTIL 633
           LENNKT+ + + P G++ GGVI MHVVV+P     K++K +  +PK   C CTIL
Sbjct: 64  LENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTEKKVDKAPKAVICTCTIL 118

>Q8LCS8:MUB2_ARATH Membrane-anchored ubiquitin-fold protein 2 - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 124

 Score =  124 bits (311), Expect = 6e-28
 Identities = 62/117 (52%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
 Frame = +1

Query: 280 MAGGKEPIEVKFRLFDGTDIGPNKYDPATTVTALKEFVLARWPQDKDIVPKTLNDVKLIN 459
           MA  K+ +E+KFRL DG+DIGP  +  ATTV  LKE V+A+WP+DK+  PKT+ DVKLI+
Sbjct: 1   MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLIS 60

Query: 460 AGRILENNKTLAESRVPVGEVPGGVITMHVVV--RPPQSDKSDKHLSNSPKQNRCGC 624
           AGRILENNKT+ + R PVG   G V TMHV++  +  + +K  K      KQN+C C
Sbjct: 61  AGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGDLKQNKCVC 117

>Q9LSD8:MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4 precursor - Arabidopsis|
           thaliana (Mouse-ear cress)
          Length = 120

 Score =  122 bits (307), Expect = 2e-27
 Identities = 56/114 (49%), Positives = 85/114 (74%), Gaps = 3/114 (2%)
 Frame = +1

Query: 301 IEVKFRLFDGTDIGPNKYDPATTVTALKEFVLARWPQDKDIVPKTLNDVKLINAGRILEN 480
           +E+KFRL+DG+D+GP +Y P  TV+ LKE +++ WP+DK IVPK+ +D+KLINAG+ILEN
Sbjct: 7   VELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINAGKILEN 66

Query: 481 NKTLAESRVPVGEVPGGVITMHVVVR-PPQSDKSDKHL--SNSPKQNRCGCTIL 633
            KT+A+ + P  ++P  VITMHVVV+  P   + +K +    +P+++ C CTI+
Sbjct: 67  GKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPEKKIEKEEAPQRSFCSCTIM 120

>Q9MAB9:MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1 precursor - Arabidopsis|
           thaliana (Mouse-ear cress)
          Length = 117

 Score =  122 bits (305), Expect = 3e-27
 Identities = 56/118 (47%), Positives = 85/118 (72%)
 Frame = +1

Query: 280 MAGGKEPIEVKFRLFDGTDIGPNKYDPATTVTALKEFVLARWPQDKDIVPKTLNDVKLIN 459
           MA     +E+KFRL DG+DIGP  +  ATTV+ALKE V++ WP++K+  PKT+ +VKLI+
Sbjct: 1   MAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS 60

Query: 460 AGRILENNKTLAESRVPVGEVPGGVITMHVVVRPPQSDKSDKHLSNSPKQNRCGCTIL 633
           AG++LEN+KT+ + R PV  + G V TMHV+++ P ++K +K     PK N+C C+++
Sbjct: 61  AGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEK-EKKPKGDPKMNKCVCSVM 117

>Q8N816:TMM99_HUMAN Protein TMEM99 precursor - Homo sapiens (Human)|
          Length = 189

 Score = 33.1 bits (74), Expect = 1.9
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = -1

Query: 479 FSSILPALMSFTSLRVFGTMSLSCGHRARTNSLSAVTVVAGSYLL 345
           FSS L +L  F+ LR  GT+  +CGHR R   L    +  GS+LL
Sbjct: 65  FSSWL-SLELFSFLRYLGTLLCACGHRLREGLLLPCLLGVGSWLL 108

>Q46JZ5:HIS5_PROMT Imidazole glycerol phosphate synthase subunit hisH -|
           Prochlorococcus marinus (strain NATL2A)
          Length = 209

 Score = 32.7 bits (73), Expect = 2.4
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +1

Query: 529 GVITMHVVVRPPQSDKSDKHLSNSPKQNRCGCTIL*RFGSARVVYFCILVPSIHAHNDCK 708
           GVI  H+   P + D+   H+  SP      C IL  +  +  +YF      +H+++ C 
Sbjct: 100 GVIKGHIRRLPQEKDERIPHIGWSPIYKTNECPILENYPGSNWMYF------VHSYSACP 153

Query: 709 FSP*QLILASQFLKS 753
             P   +  ++F K+
Sbjct: 154 LEPKHTVAVTKFGKT 168

>P54728:RD23B_MOUSE UV excision repair protein RAD23 homolog B - Mus musculus (Mouse)|
          Length = 416

 Score = 32.0 bits (71), Expect = 4.1
 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
 Frame = +1

Query: 355 DPATTVTALKEFVLARWPQDKDIVPKTLNDVKLINAGRILENNKTLAESR-------VPV 513
           DP  TV ALKE + +   + KD  P  +   KLI AG+IL ++  L E +       V +
Sbjct: 18  DPEETVKALKEKIESE--KGKDAFP--VAGQKLIYAGKILSDDTALKEYKIDEKNFVVVM 73

Query: 514 GEVPGGVITMHVVVRPPQSDKSDKHLSNSP 603
              P  V T       P S  S   +S+SP
Sbjct: 74  VTKPKAVTTAVPATTQPSSTPSPTTVSSSP 103

>Q9CAF5:NAP7_ARATH Non-intrinsic ABC protein 7, chloroplast precursor - Arabidopsis|
           thaliana (Mouse-ear cress)
          Length = 338

 Score = 32.0 bits (71), Expect = 4.1
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -2

Query: 763 PPLGFSRIGLQESIVRVKTCNRCEHGWMAPIYRNTQRGLNRSVTISCTHICSA 605
           PPL   R+ L  S  RV  CN   +   API R T+    RSV +S + + SA
Sbjct: 25  PPLPTQRVRLGTSPSRVLLCNLRANSAAAPILRTTR----RSVIVSASSVSSA 73

>P16709:UBIL_NPVAC Ubiquitin-like protein precursor - Autographa californica nuclear|
           polyhedrosis virus (AcMNPV)
          Length = 77

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 23/68 (33%), Positives = 39/68 (57%)
 Frame = +1

Query: 355 DPATTVTALKEFVLARWPQDKDIVPKTLNDVKLINAGRILENNKTLAESRVPVGEVPGGV 534
           +PA TV  LK+ +      DK+ VP  ++  +LI AG+ LE++KT+A+  +         
Sbjct: 18  EPAETVADLKQKIA-----DKEGVP--VDQQRLIFAGKQLEDSKTMADYNIQKES----- 65

Query: 535 ITMHVVVR 558
            T+H+V+R
Sbjct: 66  -TLHMVLR 72

>P80885:KPYK_BACSU Pyruvate kinase - Bacillus subtilis|
          Length = 585

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = +1

Query: 292 KEPIEVKFRLFDGTD-IGPNKYDPATTVTALKEFVLARWPQDKDIVPKTLNDVKLINAGR 468
           K+  ++ F +  G D I P+    +T V  ++E +     QD  I+PK  N   + N   
Sbjct: 173 KDARDIVFGIEQGVDFIAPSFIRRSTDVLEIRELLEEHNAQDIQIIPKIENQEGVDNIDA 232

Query: 469 ILENNKTLAESR------VPVGEVP 525
           ILE +  L  +R      +P  EVP
Sbjct: 233 ILEVSDGLMVARGDLGVEIPAEEVP 257

>P87315:HIR3_SCHPO Histone transcription regulator 3 homolog - Schizosaccharomyces|
           pombe (Fission yeast)
          Length = 1630

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 920 HYTMSTS*KQQRVPQLLTFLHTRYSLHGY 834
           HY    +  Q+ +PQ+LT +H++YS  GY
Sbjct: 877 HYDFIKADAQKLLPQILTAIHSQYSFRGY 905

>Q8R2H7:TRAK2_RAT Trafficking kinesin-binding protein 2 - Rattus norvegicus (Rat)|
          Length = 913

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
 Frame = -1

Query: 539 VITPPGTSPTG-----TRDSARVLLFSSILPALMSFTSLRVF------------GTMSLS 411
           +  PP TS  G     T +  + L F++   +  +FT+ R+             G  SLS
Sbjct: 639 IFLPPMTSAGGPVSVATSNPGKCLSFTN---STFTFTTCRILHPSDITQVTPSSGFPSLS 695

Query: 410 CGHRARTNSLSAVTVVAGSYLLGPMSVPSNRRNFT 306
           CG  A + S +AV   A SY L      +NRR+ T
Sbjct: 696 CGSSAGSASNTAVNSPAASYRLSIGESITNRRDST 730


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 163,839,898
Number of extensions: 3545673
Number of successful extensions: 9835
Number of sequences better than 10.0: 18
Number of HSP's gapped: 9824
Number of HSP's successfully gapped: 18
Length of query: 338
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 224
Effective length of database: 69,416,809
Effective search space: 15549365216
Effective search space used: 15549365216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)