>Q7T3C6:CPSF5_DANRE Cleavage and polyadenylation specificity factor 5 - Danio rerio|
           (Zebrafish) (Brachydanio rerio)
          Length = 228
 Score =  235 bits (599), Expect = 2e-61
 Identities = 109/189 (57%), Positives = 136/189 (71%)
 Frame = +1

Query: 190 VNVYPLANYTFGTKEAKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 369
           +N+YPL NYTFGTKE   EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 38  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLL 97

Query: 370 LQIGNTFCKLPGGRLKPGESEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAEWWRPNFET 549
           LQ+G TF KLPGG L PGE E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 98  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVKQDWVIDDCIGNWWRPNFEP 156

Query: 550 VMYPYCPPHISKPKECKKLFIVHLTEREYFAVPRNLRLLAVPLFELYDNVQRYGPVISTI 729
             YPY P HI+KPKE KKLF+V L E+  FAVP+N +L+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 730 PQQLSRFQF 756
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 225

>Q6DJE4:CPSF5_XENLA Cleavage and polyadenylation specificity factor 5 - Xenopus laevis|
           (African clawed frog)
          Length = 227

 Score =  234 bits (598), Expect = 3e-61
 Identities = 109/189 (57%), Positives = 136/189 (71%)
 Frame = +1

Query: 190 VNVYPLANYTFGTKEAKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 369
           +N+YPL NYTFGTKE   EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 370 LQIGNTFCKLPGGRLKPGESEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAEWWRPNFET 549
           LQ+G TF KLPGG L PGE E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVQQDWVIDDCIGNWWRPNFEP 155

Query: 550 VMYPYCPPHISKPKECKKLFIVHLTEREYFAVPRNLRLLAVPLFELYDNVQRYGPVISTI 729
             YPY P HI+KPKE KKLF+V L E+  FAVP+N +L+A PLFELYDN   YGP+IS++
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215

Query: 730 PQQLSRFQF 756
           PQ LSRF F
Sbjct: 216 PQLLSRFNF 224

>Q4KM65:CPSF5_RAT Cleavage and polyadenylation specificity factor 5 - Rattus|
           norvegicus (Rat)
          Length = 227

 Score =  234 bits (596), Expect = 5e-61
 Identities = 109/189 (57%), Positives = 136/189 (71%)
 Frame = +1

Query: 190 VNVYPLANYTFGTKEAKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 369
           +N+YPL NYTFGTKE   EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 370 LQIGNTFCKLPGGRLKPGESEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAEWWRPNFET 549
           LQ+G TF KLPGG L PGE E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 155

Query: 550 VMYPYCPPHISKPKECKKLFIVHLTEREYFAVPRNLRLLAVPLFELYDNVQRYGPVISTI 729
             YPY P HI+KPKE KKLF+V L E+  FAVP+N +L+A PLFELYDN   YGP+IS++
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215

Query: 730 PQQLSRFQF 756
           PQ LSRF F
Sbjct: 216 PQLLSRFNF 224

>Q5RAI8:CPSF5_PONPY Cleavage and polyadenylation specificity factor 5 - Pongo pygmaeus|
           (Orangutan)
          Length = 227

 Score =  234 bits (596), Expect = 5e-61
 Identities = 109/189 (57%), Positives = 136/189 (71%)
 Frame = +1

Query: 190 VNVYPLANYTFGTKEAKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 369
           +N+YPL NYTFGTKE   EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 370 LQIGNTFCKLPGGRLKPGESEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAEWWRPNFET 549
           LQ+G TF KLPGG L PGE E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 155

Query: 550 VMYPYCPPHISKPKECKKLFIVHLTEREYFAVPRNLRLLAVPLFELYDNVQRYGPVISTI 729
             YPY P HI+KPKE KKLF+V L E+  FAVP+N +L+A PLFELYDN   YGP+IS++
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215

Query: 730 PQQLSRFQF 756
           PQ LSRF F
Sbjct: 216 PQLLSRFNF 224

>Q9CQF3:CPSF5_MOUSE Cleavage and polyadenylation specificity factor 5 - Mus musculus|
           (Mouse)
          Length = 227

 Score =  234 bits (596), Expect = 5e-61
 Identities = 109/189 (57%), Positives = 136/189 (71%)
 Frame = +1

Query: 190 VNVYPLANYTFGTKEAKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 369
           +N+YPL NYTFGTKE   EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 370 LQIGNTFCKLPGGRLKPGESEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAEWWRPNFET 549
           LQ+G TF KLPGG L PGE E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 155

Query: 550 VMYPYCPPHISKPKECKKLFIVHLTEREYFAVPRNLRLLAVPLFELYDNVQRYGPVISTI 729
             YPY P HI+KPKE KKLF+V L E+  FAVP+N +L+A PLFELYDN   YGP+IS++
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215

Query: 730 PQQLSRFQF 756
           PQ LSRF F
Sbjct: 216 PQLLSRFNF 224

>O43809:CPSF5_HUMAN Cleavage and polyadenylation specificity factor 5 - Homo sapiens|
           (Human)
          Length = 227

 Score =  234 bits (596), Expect = 5e-61
 Identities = 109/189 (57%), Positives = 136/189 (71%)
 Frame = +1

Query: 190 VNVYPLANYTFGTKEAKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 369
           +N+YPL NYTFGTKE   EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 370 LQIGNTFCKLPGGRLKPGESEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAEWWRPNFET 549
           LQ+G TF KLPGG L PGE E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 155

Query: 550 VMYPYCPPHISKPKECKKLFIVHLTEREYFAVPRNLRLLAVPLFELYDNVQRYGPVISTI 729
             YPY P HI+KPKE KKLF+V L E+  FAVP+N +L+A PLFELYDN   YGP+IS++
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215

Query: 730 PQQLSRFQF 756
           PQ LSRF F
Sbjct: 216 PQLLSRFNF 224

>Q3ZCA2:CPSF5_BOVIN Cleavage and polyadenylation specificity factor 5 - Bos taurus|
           (Bovine)
          Length = 227

 Score =  234 bits (596), Expect = 5e-61
 Identities = 109/189 (57%), Positives = 136/189 (71%)
 Frame = +1

Query: 190 VNVYPLANYTFGTKEAKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 369
           +N+YPL NYTFGTKE   EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 370 LQIGNTFCKLPGGRLKPGESEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAEWWRPNFET 549
           LQ+G TF KLPGG L PGE E+EGLKR L +++         +W + +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 155

Query: 550 VMYPYCPPHISKPKECKKLFIVHLTEREYFAVPRNLRLLAVPLFELYDNVQRYGPVISTI 729
             YPY P HI+KPKE KKLF+V L E+  FAVP+N +L+A PLFELYDN   YGP+IS++
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215

Query: 730 PQQLSRFQF 756
           PQ LSRF F
Sbjct: 216 PQLLSRFNF 224

>Q9Y5R6:DMRT1_HUMAN Doublesex- and mab-3-related transcription factor 1 - Homo sapiens|
           (Human)
          Length = 373

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +3

Query: 174 SVLAGGERVPARQLHLRHQGGQDGEGHLRRRPPRPHEGQL---HERRNANKC*SNPIGAR 344
           +++A  +RV A Q+ LR Q  Q+ E  +    P P   +L    E   +N C        
Sbjct: 106 NLIAERQRVMAAQVALRRQQAQEEELGISHPIPLPSAAELLVKRENNGSNPCLMTECSGT 165

Query: 345 AQPPPHTV 368
           +QPPP +V
Sbjct: 166 SQPPPASV 173

>Q3AS25:PURQ_CHLCH Phosphoribosylformylglycinamidine synthase 1 - Chlorobium|
           chlorochromatii (strain CaD3)
          Length = 234

 Score = 32.3 bits (72), Expect = 3.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 627 KGVFRCSKELEAACCSTV*TL*QCSAVWTSDFHHPAAAVSVPVQHGE 767
           +G    +++ +  CC T  T   CS  +T D+H     + +P+ HGE
Sbjct: 102 EGALSRNRDKKFLCCQTTITPVNCSTRFTEDYHQ-GEVLRIPIAHGE 147

>Q6ZRI6:CO039_HUMAN Uncharacterized protein C15orf39 - Homo sapiens (Human)|
          Length = 1047

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 261  RRPPRPHEGQLHERRNANKC*SNPIGAR-AQPPPHTVVANWKYILQTSW 404
            R+PP P   +         C ++P  A  A PP  T+ A ++ +L+T+W
Sbjct: 966  RKPPTPGPEKAEAAAGEESCGASPTPATSASPPGPTLKARFRSLLETAW 1014

>Q8DZ99:RNZ_STRA5 Ribonuclease Z - Streptococcus agalactiae serotype V|
          Length = 309

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 583 KPKECKKLFIVHLTEREYFAVPRNLRLLAVPLFELYDNVQRYGPV 717
           KP++ KK+FI H+     F +P  L   A    E   ++  YGPV
Sbjct: 52  KPRKVKKIFITHMHGDHVFGLPGFLSSRAFQANEEQTDLDIYGPV 96

>Q8E4W1:RNZ_STRA3 Ribonuclease Z - Streptococcus agalactiae serotype III|
          Length = 309

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 583 KPKECKKLFIVHLTEREYFAVPRNLRLLAVPLFELYDNVQRYGPV 717
           KP++ KK+FI H+     F +P  L   A    E   ++  YGPV
Sbjct: 52  KPRKVKKIFITHMHGDHVFGLPGFLSSRAFQANEEQTDLDIYGPV 96


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 163,759,092
Number of extensions: 3622878
Number of successful extensions: 9805
Number of sequences better than 10.0: 12
Number of HSP's gapped: 9791
Number of HSP's successfully gapped: 12
Length of query: 328
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 215
Effective length of database: 69,691,104
Effective search space: 14983587360
Effective search space used: 14983587360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)