ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf35l16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U73217.1|TAU73217 Triticum aestivum cold acclimation protein WCOR615 (Wcor615) mRNA, complete cds Length = 776 Score = 846 bits (427), Expect = 0.0 Identities = 516/545 (94%), Gaps = 3/545 (0%) Strand = Plus / Plus Query: 68 cttcaaaaatgtcgggttggttcgggggcaagacgacggacgccaaggccgacgaggccg 127 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct: 33 cttcaaaaatgtcgggttggttcgggggtaagacg---gacgccaaggccgacgaggccg 89 Query: 128 ccaagacggggccgtccgtccaggaccgcgccatcgaggcgaaagaccagaccatcagct 187 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 90 ccaagacggggccgtccgtccaggaccgcgccatcgaggcgaaggaccagaccatcagct 149 Query: 188 tcatcggcgagaaaagcgaggccgtcacgaaggcggcctccgacaccgccgatgcggcca 247 |||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||| Sbjct: 150 tcatcggcgagaaaagcgaggccgtcaccaaggcggcgtcagacaccgccgacgcggcca 209 Query: 248 tgaagatggggggagacgccatggggaaggtctccgagacggggcaggccatcacggacc 307 ||||||||||| | |||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 210 tgaagatggggagcgacgccatggggaaggcgtcagagacggggcaggccatcacggacc 269 Query: 308 gcgccatcgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggctgcca 367 |||||||||||||||| |||||||||||||||||| |||| |||||| ||||||| |||| Sbjct: 270 gcgccatcgagagcaaggaccagacgttcggcttcttcggtgagaagaccgaggccgcca 329 Query: 368 agaagatggccgtcgacaccggcgacgccgccaagcagaagtccgccgaggccgcgaagt 427 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 330 agaagatggccgccgacaccggcgacgccgccaagcagaagtccgccgaggccgcaaagt 389 Query: 428 gtgtcgaggagaccgcggcgcagttcaccggggaacccgccgcccccaaggagcccgccg 487 | |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct: 390 gcgtcgaggagaacgcggcgaagttcaccggggaacccgccgcccccaaggagcccaccg 449 Query: 488 gcaacatgttccagcaggctggcgggcaggtgatgggcgccgctacgggcgccagggacg 547 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 450 gcaacatgttccagcaggccggcgggcaggtgatgggtgccgctacgggcgccagggacg 509 Query: 548 ccgtcatgaacacgctcgggatgggaggagacaaagccgacgccggcagcgccaaatgaa 607 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 510 ccgttatgaacacgctcgggatgggaggagacaaagccgacgtcggcagcgccaaatgaa 569 Query: 608 gaccg 612 ||||| Sbjct: 570 gaccg 574 Score = 145 bits (73), Expect = 3e-31 Identities = 113/124 (91%), Gaps = 3/124 (2%) Strand = Plus / Plus Query: 652 tccgttccaagaaactgatttctacgcatgcgtcggtgttacttcctccgttgtatgcaa 711 ||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||| Sbjct: 636 tccgttccaagaaactgatctctacgcatgcgtcggtgtaacttcgtccggtgtatgcaa 695 Query: 712 agatgctttgaatatacggatttgc-aattctcatctgatgaatatatattcttcacatt 770 ||||||||||||| ||| || |||| |||||||||||||||| ||||||||||||||| Sbjct: 696 agatgctttgaatctacagacttgctaattctcatctgatga--atatattcttcacata 753 Query: 771 tcag 774 |||| Sbjct: 754 tcag 757
>emb|X79466.1|HVES2A H.vulgare (Dbg 567) ES2A mRNA Length = 793 Score = 186 bits (94), Expect = 8e-44 Identities = 246/294 (83%), Gaps = 2/294 (0%) Strand = Plus / Plus Query: 131 agacggggccgtccgtccaggaccgcgccatcgaggcgaaagaccagaccatcagcttca 190 ||||||||| |||| |||||||||| ||| ||||||| |||||||||||| ||||||| Sbjct: 136 agacggggcagtccatccaggaccgtgccgtcgaggcaaaagaccagaccggcagcttcc 195 Query: 191 tcggcgagaaaagcgaggccgtcacgaaggcggcctccgacaccgccgatgcggccatga 250 | ||||||||||||||||| ||||||||| | |||||||| || |||| ||||||| | Sbjct: 196 ttggcgagaaaagcgaggctgtcacgaagtctgcctccgagactaccgaggcggccaaaa 255 Query: 251 agatggggggagacgccatggggaaggtctccgagacggggcaggcc-atcacggaccgc 309 ||||||| || || |||||||||||||| |||||||||| ||| ||| ||| ||| ||| Sbjct: 256 agatgggcggcgaggccatggggaaggtgtccgagacggtgcaagccggtca-ggatcgc 314 Query: 310 gccatcgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggctgccaag 369 ||| ||||| |||||||||||||| | |||| ||||||||||| | ||||| | ||| Sbjct: 315 gccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggaggccgtgaag 374 Query: 370 aagatggccgtcgacaccggcgacgccgccaagcagaagtccgccgaggccgcg 423 |||| |||| ||| || | ||||||||||||| |||||||| ||||||||||| Sbjct: 375 aagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggccgcg 428 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Plus Query: 521 tgggcgccgctacgggcgccagggacgccgtcatgaacacgctcgggatgggaggagaca 580 |||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 520 tgggtgccgctacggacgccaaggacgctgtcatgaacacgctcgggatgggaggagaca 579 Query: 581 a 581 | Sbjct: 580 a 580 Score = 42.1 bits (21), Expect = 3.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 280 tccgagacggggcaggccatcacggaccgcgccatcgagagcaaagaccagac 332 ||||||||||||||| ||||| |||||| ||| ||||| ||||||||||| Sbjct: 132 tccgagacggggcagtccatccaggaccgtgccgtcgaggcaaaagaccagac 184
>gb|AF255053.1|AF255053 Triticum aestivum cold-responsive LEA/RAB-related COR protein (Wrab17) mRNA, complete cds Length = 735 Score = 91.7 bits (46), Expect = 4e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 496 ttccagcaggctggcgggcaggtgatgggcgccgctacgggcgccagggacgccgtcatg 555 ||||||||||| |||||| | || |||| |||||||| | ||||| |||||| |||||| Sbjct: 449 ttccagcaggccggcgggaatatggtgggtgccgctacagacgccaaggacgctgtcatg 508 Query: 556 aacacgctcgggatgggaggagacaa 581 |||||||||||||||||||||||||| Sbjct: 509 aacacgctcgggatgggaggagacaa 534 Score = 85.7 bits (43), Expect = 2e-13 Identities = 115/139 (82%) Strand = Plus / Plus Query: 151 gaccgcgccatcgaggcgaaagaccagaccatcagcttcatcggcgagaaaagcgaggcc 210 ||||||||| ||||||| |||||||||||| |||| | || |||||||||||||| Sbjct: 110 gaccgcgccgtcgaggcaaaagaccagaccggggccttccttggtgagaaaagcgaggct 169 Query: 211 gtcacgaaggcggcctccgacaccgccgatgcggccatgaagatggggggagacgccatg 270 ||||||||||| |||||||| || |||| ||||| | |||||||| || || |||||| Sbjct: 170 gtcacgaaggctgcctccgagactaccgaggcggctaaaaagatgggcggcgaggccatg 229 Query: 271 gggaaggtctccgagacgg 289 ||||||| |||||||||| Sbjct: 230 gggaaggcgtccgagacgg 248
>emb|AJ000100.1|HVAJ100 Hordeum vulgare mRNA for cold-regulated protein, partial Length = 594 Score = 89.7 bits (45), Expect = 1e-14 Identities = 173/213 (81%), Gaps = 2/213 (0%) Strand = Plus / Plus Query: 212 tcacgaaggcggcctccgacaccgccgatgcggccatgaagatggggggagacgccatgg 271 |||||||| | |||||||| || |||| ||| ||| |||||||| | || ||||||| Sbjct: 1 tcacgaagtctgcctccgagactaccgaggcgaccaaaaagatgggcagcgaggccatgg 60 Query: 272 ggaaggtctccgagacggggcaggcca-tcacggaccgcgccatcgagagcaaagaccag 330 ||||||| |||||||||| ||| ||| ||| ||| |||||| ||||| ||||||||||| Sbjct: 61 ggaaggtgtccgagacggtgcaagccggtca-ggatcgcgccgtcgagggcaaagaccag 119 Query: 331 acgttcggcttcatcggcgagaaggccgaggctgccaagaagatggccgtcgacaccggc 390 ||| | |||| ||||||||||| | ||||| | ||||||| |||| ||| || | | Sbjct: 120 acggccagctttctcggcgagaagacggaggccgtgaagaagacggccaccgagactgcc 179 Query: 391 gacgccgccaagcagaagtccgccgaggccgcg 423 |||||||||||| |||||||| ||||||||||| Sbjct: 180 gacgccgccaaggagaagtccaccgaggccgcg 212 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Plus Query: 521 tgggcgccgctacgggcgccagggacgccgtcatgaacacgctcgggatgggaggagaca 580 |||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 304 tgggtgccgctacggacgccaaggacgctgtcatgaacacgctcgggatgggaggagaca 363 Query: 581 a 581 | Sbjct: 364 a 364
>ref|NM_001062730.1| Oryza sativa (japonica cultivar-group) Os05g0542500 (Os05g0542500) mRNA, complete cds Length = 968 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Plus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggctgccaagaagat 374 ||||||||| |||||||| ||||||| ||||||||||| ||||| |||||| ||| Sbjct: 380 cgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaagcagaa 439 Query: 375 ggccgtcgacaccggcgacgccgccaagcagaagtccgccgag 417 ||||| ||| |||| | |||||||||||||||| |||||||| Sbjct: 440 ggccgccgagaccgctggcgccgccaagcagaagaccgccgag 482
>gb|DQ789359.1| Oryza sativa (indica cultivar-group) late embryogenesis abundant protein (LEA3) mRNA, LEA3-1 allele, complete cds Length = 976 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Plus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggctgccaagaagat 374 ||||||||| |||||||| ||||||| ||||||||||| ||||| |||||| ||| Sbjct: 373 cgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaagcagaa 432 Query: 375 ggccgtcgacaccggcgacgccgccaagcagaagtccgccgag 417 ||||| ||| |||| | |||||||||||||||| |||||||| Sbjct: 433 ggccgccgagaccgctggcgccgccaagcagaagaccgccgag 475
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11, complete sequence Length = 115808 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Plus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggctgccaagaagat 374 ||||||||| |||||||| ||||||| ||||||||||| ||||| |||||| ||| Sbjct: 102286 cgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaagcagaa 102345 Query: 375 ggccgtcgacaccggcgacgccgccaagcagaagtccgccgag 417 ||||| ||| |||| | |||||||||||||||| |||||||| Sbjct: 102346 ggccgccgagaccgctggcgccgccaagcagaagaccgccgag 102388
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07, complete sequence Length = 122120 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Plus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggctgccaagaagat 374 ||||||||| |||||||| ||||||| ||||||||||| ||||| |||||| ||| Sbjct: 3228 cgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaagcagaa 3287 Query: 375 ggccgtcgacaccggcgacgccgccaagcagaagtccgccgag 417 ||||| ||| |||| | |||||||||||||||| |||||||| Sbjct: 3288 ggccgccgagaccgctggcgccgccaagcagaagaccgccgag 3330
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Plus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggctgccaagaagat 374 ||||||||| |||||||| ||||||| ||||||||||| ||||| |||||| ||| Sbjct: 26721289 cgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaagcagaa 26721348 Query: 375 ggccgtcgacaccggcgacgccgccaagcagaagtccgccgag 417 ||||| ||| |||| | |||||||||||||||| |||||||| Sbjct: 26721349 ggccgccgagaccgctggcgccgccaagcagaagaccgccgag 26721391
>dbj|AK119713.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-F03, full insert sequence Length = 968 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Plus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggctgccaagaagat 374 ||||||||| |||||||| ||||||| ||||||||||| ||||| |||||| ||| Sbjct: 380 cgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaagcagaa 439 Query: 375 ggccgtcgacaccggcgacgccgccaagcagaagtccgccgag 417 ||||| ||| |||| | |||||||||||||||| |||||||| Sbjct: 440 ggccgccgagaccgctggcgccgccaagcagaagaccgccgag 482
>dbj|AK063984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D08, full insert sequence Length = 1277 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Plus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggctgccaagaagat 374 ||||||||| |||||||| ||||||| ||||||||||| ||||| |||||| ||| Sbjct: 474 cgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaagcagaa 533 Query: 375 ggccgtcgacaccggcgacgccgccaagcagaagtccgccgag 417 ||||| ||| |||| | |||||||||||||||| |||||||| Sbjct: 534 ggccgccgagaccgctggcgccgccaagcagaagaccgccgag 576
>emb|Z68090.1|OSLEA3X1 O.sativa mRNA for group 3 LEA (type I) protein Length = 966 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Plus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggctgccaagaagat 374 ||||||||| |||||||| ||||||| ||||||||||| ||||| |||||| ||| Sbjct: 361 cgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaagcagaa 420 Query: 375 ggccgtcgacaccggcgacgccgccaagcagaagtccgccgag 417 ||||| ||| |||| | |||||||||||||||| |||||||| Sbjct: 421 ggccgccgagaccgctggcgccgccaagcagaagaccgccgag 463
>gb|U57641.1|OSU57641 Oryza sativa LEA-like protein mRNA, embryo-specific clone Ose730, complete cds Length = 953 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Plus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggctgccaagaagat 374 ||||||||| |||||||| ||||||| ||||||||||| ||||| |||||| ||| Sbjct: 346 cgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaagcagaa 405 Query: 375 ggccgtcgacaccggcgacgccgccaagcagaagtccgccgag 417 ||||| ||| |||| | |||||||||||||||| |||||||| Sbjct: 406 ggccgccgagaccgctggcgccgccaagcagaagaccgccgag 448
>gb|AF255052.1|AF255052 Triticum aestivum cold-responsive LEA/RAB-related COR protein (Wrab19) mRNA, complete cds Length = 698 Score = 60.0 bits (30), Expect = 1e-05 Identities = 87/106 (82%) Strand = Plus / Plus Query: 303 ggaccgcgccatcgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggc 362 |||||||||| ||||||||| |||||||| | ||||| ||||||||||| | ||||| Sbjct: 279 ggaccgcgccgccgagagcaaggaccagaccggcagcttcctcggcgagaagacggaggc 338 Query: 363 tgccaagaagatggccgtcgacaccggcgacgccgccaagcagaag 408 |||||| ||| ||||| ||| || | ||| || |||||||||||| Sbjct: 339 ggccaagcagaaggccgccgagacggccgaggcggccaagcagaag 384
>gb|AF139915.1|AF139915 Triticum aestivum ABA-inducible protein WRAB1 mRNA, complete cds Length = 698 Score = 60.0 bits (30), Expect = 1e-05 Identities = 87/106 (82%) Strand = Plus / Plus Query: 303 ggaccgcgccatcgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggc 362 |||||||||| ||||||||| |||||||| | ||||| ||||||||||| | ||||| Sbjct: 279 ggaccgcgccgccgagagcaaggaccagaccggcagcttcctcggcgagaagacggaggc 338 Query: 363 tgccaagaagatggccgtcgacaccggcgacgccgccaagcagaag 408 |||||| ||| ||||| ||| || | ||| || |||||||||||| Sbjct: 339 ggccaagcagaaggccgccgagacggccgaggcggccaagcagaag 384
>gb|AF046884.1|AF046884 Oryza sativa group 3 LEA protein (lea) gene, complete cds Length = 3734 Score = 58.0 bits (29), Expect = 5e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggctgccaagaagat 374 ||||||||| |||||||| ||||||| ||||||||||| ||||| |||||| ||| Sbjct: 2703 cgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaagcagaa 2762 Query: 375 ggccgtcgacaccggcgacgccgccaagcagaa 407 ||||| ||| |||| | ||||||||||||||| Sbjct: 2763 ggccgccgagaccgctggcgccgccaagcagaa 2795
>emb|X13498.1|HVABAIP Barley pHVA1 mRNA for an ABA-inducible protein Length = 997 Score = 56.0 bits (28), Expect = 2e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 345 cggcgagaaggccgaggctgccaagaagatggccgtcgacaccggcgacgccgccaagca 404 |||||||| ||||||||| ||||| ||| | ||| ||| || | ||| ||||||||||| Sbjct: 254 cggcgagacggccgaggccaccaagcagaagaccggcgagacggccgaggccgccaagca 313 Query: 405 gaagtccgccgaggcc 420 |||| ||||||||||| Sbjct: 314 gaaggccgccgaggcc 329
>emb|X78205.1|HVHVA1 H.vulgare (Himalaya) HVA1 gene Length = 1804 Score = 56.0 bits (28), Expect = 2e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 345 cggcgagaaggccgaggctgccaagaagatggccgtcgacaccggcgacgccgccaagca 404 |||||||| ||||||||| ||||| ||| | ||| ||| || | ||| ||||||||||| Sbjct: 733 cggcgagacggccgaggccaccaagcagaagaccggcgagacggccgaggccgccaagca 792 Query: 405 gaagtccgccgaggcc 420 |||| ||||||||||| Sbjct: 793 gaaggccgccgaggcc 808
>gb|AY148491.1| Triticum aestivum LEA2 protein (LEA2) mRNA, complete cds Length = 664 Score = 50.1 bits (25), Expect = 0.012 Identities = 64/77 (83%) Strand = Plus / Plus Query: 303 ggaccgcgccatcgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggc 362 |||||||||| ||||||||| |||||||| | ||||| ||||||||||| | ||||| Sbjct: 201 ggaccgcgccgccgagagcaaggaccagacaggcagcttcctcggcgagaagacggaggc 260 Query: 363 tgccaagaagatggccg 379 |||||| ||| ||||| Sbjct: 261 ggccaagcagaaggccg 277
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 48.1 bits (24), Expect = 0.049 Identities = 24/24 (100%) Strand = Plus / Minus Query: 109 gccaaggccgacgaggccgccaag 132 |||||||||||||||||||||||| Sbjct: 3425426 gccaaggccgacgaggccgccaag 3425403
>emb|Z29512.1|ZMLEAMGL3 Z.mays mRNA for group 3 Lea protein MGL3 Length = 1094 Score = 48.1 bits (24), Expect = 0.049 Identities = 27/28 (96%) Strand = Plus / Plus Query: 394 gccgccaagcagaagtccgccgaggccg 421 ||||||||||||||| |||||||||||| Sbjct: 579 gccgccaagcagaaggccgccgaggccg 606
>dbj|D26552.1|MZEG3LP Zea mays mRNA for group 3 Lea protein MGL3, complete cds Length = 1094 Score = 48.1 bits (24), Expect = 0.049 Identities = 27/28 (96%) Strand = Plus / Plus Query: 394 gccgccaagcagaagtccgccgaggccg 421 ||||||||||||||| |||||||||||| Sbjct: 579 gccgccaagcagaaggccgccgaggccg 606
>gb|U05226.1|ZMU05226 Zea mays group 3 Lea protein MGL3 mRNA, complete cds Length = 1094 Score = 48.1 bits (24), Expect = 0.049 Identities = 27/28 (96%) Strand = Plus / Plus Query: 394 gccgccaagcagaagtccgccgaggccg 421 ||||||||||||||| |||||||||||| Sbjct: 579 gccgccaagcagaaggccgccgaggccg 606
>gb|DQ246069.1| Zea mays clone 13925 mRNA sequence Length = 982 Score = 46.1 bits (23), Expect = 0.19 Identities = 53/63 (84%) Strand = Plus / Plus Query: 358 gaggctgccaagaagatggccgtcgacaccggcgacgccgccaagcagaagtccgccgag 417 |||||| ||||| ||| ||||| ||| || | ||| ||| ||||||||||| |||||||| Sbjct: 271 gaggctaccaagcagaaggccggcgagacggccgatgccaccaagcagaaggccgccgag 330 Query: 418 gcc 420 ||| Sbjct: 331 gcc 333
>gb|DQ244556.1| Zea mays clone 9124 mRNA sequence Length = 786 Score = 46.1 bits (23), Expect = 0.19 Identities = 56/67 (83%) Strand = Plus / Plus Query: 303 ggaccgcgccatcgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggc 362 |||||||||| ||||||||| |||||||| | ||||| ||||||||||| | ||||| Sbjct: 315 ggaccgcgccgccgagagcaaggaccagaccggcagcttcctcggcgagaagactgaggc 374 Query: 363 tgccaag 369 |||||| Sbjct: 375 ggccaag 381
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 46.1 bits (23), Expect = 0.19 Identities = 26/27 (96%) Strand = Plus / Plus Query: 502 caggctggcgggcaggtgatgggcgcc 528 |||||||||||||||| |||||||||| Sbjct: 3573652 caggctggcgggcaggggatgggcgcc 3573678 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 529 gctacgggcgccagggacgcc 549 ||||||||||||||||||||| Sbjct: 6451974 gctacgggcgccagggacgcc 6451954
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 46.1 bits (23), Expect = 0.19 Identities = 26/27 (96%) Strand = Plus / Minus Query: 156 cgccatcgaggcgaaagaccagaccat 182 |||||||||||||||||||| |||||| Sbjct: 1823688 cgccatcgaggcgaaagacctgaccat 1823662
>emb|AL132960.2|ATF5K20 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20 Length = 119407 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 762 cttcacatttcagtttttttttt 784 ||||||||||||||||||||||| Sbjct: 95729 cttcacatttcagtttttttttt 95751
>dbj|AB115914.1| Triticum aestivum Wrab18 mRNA for ABA inducible protein, complete cds Length = 852 Score = 46.1 bits (23), Expect = 0.19 Identities = 56/67 (83%) Strand = Plus / Plus Query: 303 ggaccgcgccatcgagagcaaagaccagacgttcggcttcatcggcgagaaggccgaggc 362 |||||||||| ||||||||| |||||||| | ||||| ||||||||||| | ||||| Sbjct: 280 ggaccgcgccgccgagagcaaggaccagaccggcagcttcctcggcgagaagacggaggc 339 Query: 363 tgccaag 369 |||||| Sbjct: 340 ggccaag 346
>ref|NM_001048327.1| Oryza sativa (japonica cultivar-group) Os01g0109000 (Os01g0109000) mRNA, partial cds Length = 1458 Score = 44.1 bits (22), Expect = 0.76 Identities = 40/46 (86%) Strand = Plus / Plus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgag 360 ||||||||| |||||||| ||||||| ||||||||||| ||||| Sbjct: 287 cgagagcaaggaccagactagcggcttcctcggcgagaagaccgag 332
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Plus Query: 111 caaggccgacgaggccgccaag 132 |||||||||||||||||||||| Sbjct: 2537685 caaggccgacgaggccgccaag 2537706
>gb|AC073437.50| Mus musculus strain 129/Sv chromosome 2 clone ct7-531j6, complete sequence Length = 176056 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 agaaagaagatagaacacagac 33 |||||||||||||||||||||| Sbjct: 93805 agaaagaagatagaacacagac 93784
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 0.76 Identities = 40/46 (86%) Strand = Plus / Minus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgag 360 ||||||||| |||||||| ||||||| ||||||||||| ||||| Sbjct: 495967 cgagagcaaggaccagactagcggcttcctcggcgagaagaccgag 495922
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482C06 Length = 182779 Score = 44.1 bits (22), Expect = 0.76 Identities = 40/46 (86%) Strand = Plus / Minus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgag 360 ||||||||| |||||||| ||||||| ||||||||||| ||||| Sbjct: 136168 cgagagcaaggaccagactagcggcttcctcggcgagaagaccgag 136123
>dbj|AK120074.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013007J15, full insert sequence Length = 1459 Score = 44.1 bits (22), Expect = 0.76 Identities = 40/46 (86%) Strand = Plus / Plus Query: 315 cgagagcaaagaccagacgttcggcttcatcggcgagaaggccgag 360 ||||||||| |||||||| ||||||| ||||||||||| ||||| Sbjct: 288 cgagagcaaggaccagactagcggcttcctcggcgagaagaccgag 333
>gb|AC153994.8| Mus musculus 6 BAC RP24-178H18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179333 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Plus Query: 763 ttcacatttcagtttttttttt 784 |||||||||||||||||||||| Sbjct: 72171 ttcacatttcagtttttttttt 72192
>emb|AL672100.7| Mouse DNA sequence from clone RP23-125A1 on chromosome 2, complete sequence Length = 196421 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 agaaagaagatagaacacagac 33 |||||||||||||||||||||| Sbjct: 166485 agaaagaagatagaacacagac 166464
>emb|CT833137.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009B23, full insert sequence Length = 981 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 cgccgccaagcagaagtccgccgag 417 |||||||||||||||| |||||||| Sbjct: 468 cgccgccaagcagaagaccgccgag 492
>ref|XM_001213249.1| Aspergillus terreus NIH2624 siderophore iron transporter mirA (ATEG_04071) mRNA, complete cds Length = 1860 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 ggccgtcacgaaggcggcctc 227 ||||||||||||||||||||| Sbjct: 1401 ggccgtcacgaaggcggcctc 1381
>ref|XM_001209476.1| Aspergillus terreus NIH2624 glutamate synthase precursor (ATEG_10174) mRNA, complete cds Length = 6285 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 aaggccgaggctgccaagaag 372 ||||||||||||||||||||| Sbjct: 4669 aaggccgaggctgccaagaag 4689
>gb|CP000221.2| Drosophila melanogaster genomic scaffold 211000022280740 Length = 773416 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 760 ttcttcacatttcagtttttttttt 784 ||||| ||||||||||||||||||| Sbjct: 224191 ttcttaacatttcagtttttttttt 224215
>gb|AC188953.2| Gallus gallus BAC clone CH261-138H10 from chromosome z, complete sequence Length = 218631 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 763 ttcacatttcagttttttttt 783 ||||||||||||||||||||| Sbjct: 124355 ttcacatttcagttttttttt 124335
>ref|XM_624292.2| PREDICTED: Apis mellifera similar to Another transcription unit CG1433-PA (LOC551906), mRNA Length = 1812 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 742 tcatctgatgaatatatattc 762 ||||||||||||||||||||| Sbjct: 1670 tcatctgatgaatatatattc 1650
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 581 aagccgacgccggcagcgcca 601 ||||||||||||||||||||| Sbjct: 4705189 aagccgacgccggcagcgcca 4705209
>gb|AC136507.19| Medicago truncatula clone mth2-24o19, complete sequence Length = 131025 Score = 42.1 bits (21), Expect = 3.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 752 aatatatattcttcacatttcagtttttttttt 784 |||||||||||||| |||||||||||| |||| Sbjct: 77648 aatatatattcttctaatttcagtttttgtttt 77680
>gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete sequence Length = 134901 Score = 42.1 bits (21), Expect = 3.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 752 aatatatattcttcacatttcagtttttttttt 784 |||||||||||||| |||||||||||| |||| Sbjct: 80249 aatatatattcttctaatttcagtttttgtttt 80217
>gb|AC125375.3| Mus musculus BAC clone RP23-464K21 from chromosome 14, complete sequence Length = 198193 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 agcaagagaaagaagatagaa 26 ||||||||||||||||||||| Sbjct: 156945 agcaagagaaagaagatagaa 156965
>gb|AC122274.4| Mus musculus BAC clone RP23-228J3 from 14, complete sequence Length = 192135 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 agcaagagaaagaagatagaa 26 ||||||||||||||||||||| Sbjct: 82213 agcaagagaaagaagatagaa 82193
>gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence Length = 105543 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 763 ttcacatttcagttttttttt 783 ||||||||||||||||||||| Sbjct: 19392 ttcacatttcagttttttttt 19372
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 374 tggccgtcgacaccggcgacg 394 ||||||||||||||||||||| Sbjct: 2665894 tggccgtcgacaccggcgacg 2665874
>gb|AC108074.3| Homo sapiens BAC clone RP11-717H13 from 4, complete sequence Length = 128635 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 751 gaatatatattcttcacattt 771 ||||||||||||||||||||| Sbjct: 113125 gaatatatattcttcacattt 113145
>gb|AC027458.4|AC027458 Homo sapiens chromosome 18, clone RP11-723G8, complete sequence Length = 182495 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 656 ttccaagaaactgatttctac 676 ||||||||||||||||||||| Sbjct: 148676 ttccaagaaactgatttctac 148696
>emb|CR790365.7| Zebrafish DNA sequence from clone DKEY-179K24 in linkage group 3, complete sequence Length = 161472 Score = 42.1 bits (21), Expect = 3.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 756 tatattcttcacatttcagtttttttttt 784 |||||| |||||| ||||||||||||||| Sbjct: 134796 tatatttttcacaattcagtttttttttt 134768
>gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete genome Length = 335593 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 cgaggctgccaagaagatggc 377 ||||||||||||||||||||| Sbjct: 234244 cgaggctgccaagaagatggc 234264
>emb|CR388175.9| Zebrafish DNA sequence from clone DKEY-63B1 in linkage group 20, complete sequence Length = 207204 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 764 tcacatttcagtttttttttt 784 ||||||||||||||||||||| Sbjct: 50228 tcacatttcagtttttttttt 50208
>gb|L14750.1|ATHCARANHY Arabidopsis thaliana carbonic anhydrase gene, complete exons 1-9 Length = 3779 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 763 ttcacatttcagttttttttt 783 ||||||||||||||||||||| Sbjct: 877 ttcacatttcagttttttttt 897 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 152,248,721 Number of extensions: 8326367 Number of successful extensions: 167909 Number of sequences better than 10.0: 56 Number of HSP's gapped: 167900 Number of HSP's successfully gapped: 63 Length of query: 803 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 781 Effective length of database: 18,508,616,841 Effective search space: 14455229752821 Effective search space used: 14455229752821 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
