ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf35k12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P28192:PTP2_CAEEL Tyrosine-protein phosphatase 2 precursor - Cae... 28 1.6
2P00606:PA20_BUNMU Phospholipase A2 precursor - Bungarus multicin... 33 3.2
3Q0S1H1:DXS_RHOSR 1-deoxy-D-xylulose-5-phosphate synthase - Rhodo... 33 3.2
4Q2GH55:RL4_EHRCR 50S ribosomal protein L4 - Ehrlichia chaffeensi... 33 4.2
5Q6WVG3:KCD12_MOUSE BTB/POZ domain-containing protein KCTD12 - Mu... 33 4.2

>P28192:PTP2_CAEEL Tyrosine-protein phosphatase 2 precursor - Caenorhabditis elegans|
          Length = 1159
 Score = 28.1 bits (61), Expect(2) = 1.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 865 LSISSNAFPNSLFSASTIETLPHTTFSLRISRFTNKG 755
           L++S N   + LF    ++  P+T + +R+S  T KG
Sbjct: 387 LNVSPNGVKSKLFKYRLVDLNPNTQYRIRVSASTIKG 423



 Score = 25.0 bits (53), Expect(2) = 1.6
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -3

Query: 717 RWNIVPHGPAKISPTISRRAMNQVS----RT*MQSLD 619
           RWN  P   +K SPT + +  NQ +     T M SLD
Sbjct: 459 RWNYEPSVNSKKSPTFTVKVTNQTTSLQFNTTMLSLD 495



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>P00606:PA20_BUNMU Phospholipase A2 precursor - Bungarus multicinctus (Many-banded|
           krait)
          Length = 145

 Score = 33.5 bits (75), Expect = 3.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 405 IVLLSIVCVSLIGAYVYPPRRYSTCYFFASSVCTPFKDWL 524
           +++LS VCVSL+GA   PP+  +   F    VC   + W+
Sbjct: 6   LLILSAVCVSLLGAANVPPQHLNLYQFKNMIVCAGTRPWI 45



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>Q0S1H1:DXS_RHOSR 1-deoxy-D-xylulose-5-phosphate synthase - Rhodococcus sp. (strain|
           RHA1)
          Length = 649

 Score = 33.5 bits (75), Expect = 3.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 135 PGPGHDAPSSRSALRKGGSIGGIILFTPCLVRGM*FWPSEAHV 263
           P  GHD  +  SALR+  + GG ++      +GM + P+E HV
Sbjct: 251 PVDGHDEAALESALRRAKAFGGPVIVHAVTRKGMGYAPAENHV 293



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>Q2GH55:RL4_EHRCR 50S ribosomal protein L4 - Ehrlichia chaffeensis (strain Arkansas)|
          Length = 205

 Score = 33.1 bits (74), Expect = 4.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 269 YNPDILLLILQWQGDESTAGVAAGQQGHDSHATSAPPHCQE 391
           Y PDIL +++ WQ  +  AG    +   D   T+A PH Q+
Sbjct: 27  YRPDILKMVVDWQLSKRRAGTHKAKTIGDISGTTAKPHRQK 67



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>Q6WVG3:KCD12_MOUSE BTB/POZ domain-containing protein KCTD12 - Mus musculus (Mouse)|
          Length = 327

 Score = 33.1 bits (74), Expect = 4.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 114 RRDAPRSPGPGHDAPSSRSALRKGGSIGGIIL 209
           R  AP+ PGPG   P SR  + K GS+G  +L
Sbjct: 128 RLGAPQQPGPGPPPPHSRRGVHKEGSLGDELL 159


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 345,029,282
Number of extensions: 8018580
Number of successful extensions: 19372
Number of sequences better than 10.0: 5
Number of HSP's gapped: 19367
Number of HSP's successfully gapped: 6
Length of query: 633
Length of database: 100,686,439
Length adjustment: 119
Effective length of query: 514
Effective length of database: 68,045,334
Effective search space: 34975301676
Effective search space used: 34975301676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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