| Clone Name | FLbaf32i13 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os05g40300:12005.t03569:unspliced-genomic expressed protein| Length = 2577 Score = 85.8 bits (181), Expect(5) = 2e-32 Identities = 32/35 (91%), Positives = 33/35 (94%) Frame = +2 / +1 Query: 116 RLHWLEAMLPLGIIGGFLCIMGNGQYYIHKAAHGR 220 RLHWLEAMLPLGIIGG LCIMGN QYYIH+AAHGR Sbjct: 151 RLHWLEAMLPLGIIGGMLCIMGNAQYYIHRAAHGR 255 Score = 45.1 bits (92), Expect(5) = 2e-32 Identities = 16/27 (59%), Positives = 22/27 (81%) Frame = +2 / +2 Query: 218 RPKHIGNDMWDVAMERRDKKLVDKPAA 298 +PKHIGND WD+AM RRDK L+ + ++ Sbjct: 374 QPKHIGNDNWDMAMARRDKVLLHQASS 454 Score = 36.8 bits (74), Expect(5) = 2e-32 Identities = 12/21 (57%), Positives = 17/21 (80%) Frame = +1 / +2 Query: 403 GLLFLFSVSSHWMNNVYLKLI 465 GL+FLF+ +WMNNVYL+ + Sbjct: 2237 GLMFLFTTFEYWMNNVYLESV 2299 Score = 29.0 bits (57), Expect(5) = 2e-32 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = +3 / +1 Query: 324 SFLDVDEALSEAQKYCC 374 S LDVDE +S AQ Y C Sbjct: 2161 SSLDVDEVISNAQNYSC 2211 Score = 23.5 bits (45), Expect(5) = 2e-32 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +3 / +2 Query: 78 SAVSPSGSRWLG 113 +A SP GSRW G Sbjct: 119 AATSPPGSRWRG 154 Score = 42.3 bits (86), Expect(5) = 3e-16 Identities = 18/29 (62%), Positives = 23/29 (79%) Frame = -3 / -3 Query: 307 ILVGGRLVDELLVTALHGDVPHVVPDVLR 221 +++GG L++E LV A HG VP VVPDVLR Sbjct: 463 VVLGGGLMEEHLVPAGHGHVPIVVPDVLR 377 Score = 37.3 bits (75), Expect(5) = 3e-16 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = -1 / -2 Query: 219 LPCAALWM*YWPLPMMQ 169 LPCAALWM*Y PMMQ Sbjct: 254 LPCAALWM*YCAFPMMQ 204 Score = 35.9 bits (72), Expect(5) = 3e-16 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = -1 / -3 Query: 453 VHIIHPMTGN*KQKQKPQFPIDT 385 +HIIHP+ + KQK KP FP+ T Sbjct: 2287 IHIIHPIFKSCKQKHKPSFPLYT 2219 Score = 25.4 bits (49), Expect(5) = 3e-16 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = -3 / -1 Query: 148 QRQHGLQPVQP 116 QRQH LQPV+P Sbjct: 183 QRQHRLQPVKP 151 Score = 22.6 bits (43), Expect(5) = 3e-16 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = -3 / -1 Query: 115 EPSHREPDGETA 80 +P HR+P GE A Sbjct: 156 KPRHRDPGGEVA 121 Score = 38.6 bits (78), Expect(2) = 0.001 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -1 / -1 Query: 279 SFLSRRSMATSHMSFPMCFG 220 S LSRR+MA S +SFPMCFG Sbjct: 435 STLSRRAMAMSQLSFPMCFG 376 Score = 26.7 bits (52), Expect(2) = 0.001 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -2 / -1 Query: 455 RYTLFIQ*LETENRNRSPS 399 RYTLFIQ + N+N SP+ Sbjct: 2289 RYTLFIQYSKVVNKNISPA 2233 Score = 32.7 bits (65), Expect(2) = 0.004 Identities = 15/28 (53%), Positives = 15/28 (53%) Frame = +2 / +3 Query: 368 LLCSFHVSMGNWGFCFCFQFPVIG*IMC 451 LL V G G CFC Q IG*IMC Sbjct: 2202 LLLLVSVYNGKLGLCFCLQLLNIG*IMC 2285 Score = 26.7 bits (52), Expect(2) = 0.004 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +1 / +2 Query: 325 LSWMLTKLFQKLRNTAV*F 381 L+WML KLFQ R T V F Sbjct: 2162 LAWMLMKLFQMPRITPVSF 2218
>LOC_Os11g38620:12011.t03405:unspliced-genomic expressed protein| Length = 4634 Score = 33.1 bits (66), Expect = 1.7 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -3 / +3 Query: 142 QHGLQPVQPEPSHREPDGETADGSG 68 Q G+ P +P P HRE +GE G G Sbjct: 411 QRGVLPPRPGPHHREREGEGCQGEG 485
>LOC_Os03g06520:12003.t00519:unspliced-genomic sulfate transporter 3.1, putative, expressed| Length = 5761 Score = 33.1 bits (66), Expect = 1.7 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = -2 / +2 Query: 395 PLIHGNYTAVFLSF*KSFVNIQERSIVDQYPSWRPACRRASCHGA 261 PL +G + L * SF + E++++ + WR + RRASC+ A Sbjct: 3203 PLYYGTEGVLVLHP*FSFASENEKTVLLEMQ*WRASFRRASCNFA 3337
>LOC_Os01g59050:12001.t05297:unspliced-genomic cytochrome P450 94A1, putative| Length = 1553 Score = 32.7 bits (65), Expect = 2.3 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -2 / +2 Query: 302 SWRPACRRASCHGAP 258 SWR +CRR+S HGAP Sbjct: 689 SWRGSCRRSSGHGAP 733
>LOC_Os06g02580:12006.t00151:unspliced-genomic nickel ion transporter, putative, expressed| Length = 1838 Score = 32.2 bits (64), Expect = 3.1 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = -2 / -2 Query: 299 WRPACRRASCHGAP 258 WRP CRR +C G P Sbjct: 1171 WRPRCRRGTCQGTP 1130
>LOC_Os02g08544:12002.t00751:unspliced-genomic homeobox protein knotted-1-like 3, putative, expressed| Length = 3444 Score = 24.0 bits (46), Expect(3) = 4.6 Identities = 7/23 (30%), Positives = 14/23 (60%) Frame = -1 / -3 Query: 384 WKLHSSISELLKELRQHPRKINC 316 +K+H+ +L + +P K+NC Sbjct: 637 YKVHTIAKQLKNLIADNPNKLNC 569 Score = 24.0 bits (46), Expect(3) = 4.6 Identities = 6/7 (85%), Positives = 6/7 (85%) Frame = -2 / -2 Query: 35 GGWGNWG 15 GGWG WG Sbjct: 62 GGWGGWG 42 Score = 23.1 bits (44), Expect(3) = 4.6 Identities = 9/27 (33%), Positives = 12/27 (44%) Frame = -3 / -3 Query: 142 QHGLQPVQPEPSHREPDGETADGSGTA 62 +HG P PS G+ A G +A Sbjct: 151 RHGAAGASPPPSPVRDSGDAATGGSSA 71
>LOC_Os09g26770:12009.t02356:unspliced-genomic expressed protein| Length = 6237 Score = 31.3 bits (62), Expect = 5.9 Identities = 8/15 (53%), Positives = 9/15 (60%) Frame = -2 / -1 Query: 299 WRPACRRASCHGAPW 255 W+P CR CHG W Sbjct: 2571 WQPGCRAERCHGETW 2527
>LOC_Os07g46590:12007.t04295:unspliced-genomic chromodomain-helicase-DNA-binding protein, putative, expressed| Length = 7776 Score = 31.3 bits (62), Expect = 5.9 Identities = 14/54 (25%), Positives = 28/54 (51%) Frame = +3 / +3 Query: 342 EALSEAQKYCCVVSMYQWETGASVSVFSFQSLDE*CVPKVNKTKYDPLANCLPF 503 EA + + CV++ ++W + +S + ++ + E C P + K P+ N L F Sbjct: 3873 EAF*QNNGHSCVITTHRWFSTSSTRMVIWKFVKERCYPICSSGKSAPVLNILFF 4034
>LOC_Os07g11890:12007.t01061:unspliced-genomic cytochrome P450 71D7, putative| Length = 3682 Score = 31.3 bits (62), Expect = 5.9 Identities = 9/17 (52%), Positives = 9/17 (52%) Frame = -2 / +3 Query: 305 PSWRPACRRASCHGAPW 255 P W P SC GAPW Sbjct: 351 PGWEPGSSTTSCSGAPW 401
>LOC_Os02g54640:12002.t05043:unspliced-genomic glutamate receptor 2.9 precursor, putative, expressed| Length = 6890 Score = 31.3 bits (62), Expect = 5.9 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +3 / +1 Query: 504 PSSNIHEQCVMFVVSIMDFYMDIL 575 PSS+IHE CV++ V ++ Y +L Sbjct: 2167 PSSSIHENCVVYTVPLLLLYS*VL 2238
>LOC_Os01g51370:12001.t06755:unspliced-genomic expressed protein| Length = 1909 Score = 31.3 bits (62), Expect = 6.0 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 / +3 Query: 364 NTAV*FPCINGKLGLLFLFSVSSHWMNNVYL 456 N +V F C +G L L S WMN +Y+ Sbjct: 621 NVSVIFRCFSGTSNLCMLLLCSMKWMNRLYI 713
>LOC_Os04g22800:12004.t02007:unspliced-genomic hypothetical protein| Length = 2495 Score = 29.0 bits (57), Expect(2) = 7.3 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = -1 / +1 Query: 294 AGLSTSFLSRRSMATSHMSFPMCFGLP 214 A S RRS A S SFP+CF P Sbjct: 2098 ASPSVDLCFRRSAACSCTSFPVCFAAP 2178 Score = 22.6 bits (43), Expect(2) = 7.3 Identities = 8/21 (38%), Positives = 13/21 (61%) Frame = -2 / +2 Query: 575 KYIHIKIHNRYNKHHTLFMNI 513 KY H + H+R+ + LF N+ Sbjct: 1955 KYCHHRHHSRW*QPQLLFANV 2017
>LOC_Os01g56850:12001.t05095:unspliced-genomic expressed protein| Length = 1848 Score = 25.4 bits (49), Expect(2) = 7.7 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = -2 / +1 Query: 308 YPSWRPACR 282 YP+WRP CR Sbjct: 763 YPAWRPWCR 789 Score = 22.6 bits (43), Expect(2) = 7.7 Identities = 7/18 (38%), Positives = 11/18 (61%) Frame = -3 / +2 Query: 148 QRQHGLQPVQPEPSHREP 95 Q++HG+ P +HR P Sbjct: 914 QQRHGVPREPPRAAHRRP 967
>LOC_Os10g04370:12010.t00322:unspliced-genomic F-box domain containing protein, expressed| Length = 1687 Score = 30.9 bits (61), Expect = 8.1 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -2 / +1 Query: 305 PSWRPACRRASCHGAPW 255 P R CRR SC G+PW Sbjct: 598 PRCRLTCRRTSCAGSPW 648
>LOC_Os07g33680:12007.t03046:unspliced-genomic succinate dehydrogenase subunit 3, putative, expressed| Length = 1796 Score = 30.9 bits (61), Expect = 8.1 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = -3 / -3 Query: 91 GETADGSGTATRSRFASYPAVGETGVA 11 G DG GT R R A +PAV E GVA Sbjct: 342 GGGGDGGGT*GRCRPAGWPAVVEAGVA 262
>LOC_Os06g42430:12006.t03934:unspliced-genomic expressed protein| Length = 3369 Score = 30.9 bits (61), Expect = 8.1 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +2 / +1 Query: 482 PCKLFTLSLLEYS*TMCDVCCIY 550 PC +F +LL T+C++CC++ Sbjct: 3301 PCPIFVGNLLTLDATLCNLCCMH 3369
>LOC_Os04g38340:12004.t03405:unspliced-genomic serologically defined breast cancer antigen NY-BR-84, putative,| expressed Length = 5449 Score = 30.9 bits (61), Expect = 8.1 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +2 / +2 Query: 491 LFTLSLLEYS*TMCDVCCIYYGFLYGYT 574 LF LS L YS*TMC +C + G+T Sbjct: 4532 LFVLSNLVYS*TMCKICNFFSVSSRGHT 4615
>LOC_Os02g46680:12002.t04255:unspliced-genomic multidrug resistance protein 2, putative, expressed| Length = 11127 Score = 30.9 bits (61), Expect = 8.1 Identities = 9/18 (50%), Positives = 10/18 (55%) Frame = -2 / -1 Query: 308 YPSWRPACRRASCHGAPW 255 +P WRP CRR G W Sbjct: 8142 HPCWRPPCRRVCSPGCSW 8089
>LOC_Os02g01440:12002.t00044:unspliced-genomic nitric-oxide synthase, putative, expressed| Length = 4144 Score = 30.9 bits (61), Expect = 8.1 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +3 / +3 Query: 483 LANCLPFPSSNIHEQCVMFVVSIMDFYMDIL 575 L+ C PFP+ +H V+F+VS + ++ L Sbjct: 1299 LSPCKPFPTLALHN*MVVFIVSYVHLFLHFL 1391
>LOC_Os05g44080:12005.t03897:unspliced-genomic expressed protein| Length = 6230 Score = 24.4 bits (47), Expect(2) = 9.3 Identities = 5/11 (45%), Positives = 8/11 (72%) Frame = +3 / +1 Query: 363 KYCCVVSMYQW 395 +YCC +S + W Sbjct: 4543 RYCCCISFFNW 4575 Score = 23.1 bits (44), Expect(2) = 9.3 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = +2 / +2 Query: 533 DVCCIYYGFLY 565 +VC I+YGF Y Sbjct: 4640 EVCIIHYGFSY 4672 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 192,465,453 Number of extensions: 2675466 Number of successful extensions: 13772 Number of sequences better than 10.0: 20 Length of query: 198 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 150 Effective length of database: 52,912,542 Effective search space: 7936881300 Effective search space used: 7936881300 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)