| Clone Name | FLbaf35j01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001048715.1| Oryza sativa (japonica cultivar-group) Os01g0176300 (Os01g0176300) mRNA, complete cds Length = 1998 Score = 846 bits (427), Expect = 0.0 Identities = 1231/1499 (82%) Strand = Plus / Plus Query: 780 tggccactccggtcacctacatcacggtgctgtcagcatgtggcaaaggcaacgacgtcc 839 ||||||| ||||||||||| || ||||||| || || || || ||||| || ||| | | Sbjct: 473 tggccaccgcggtcacctacgtctcggtgctctcggcttgcgggaaagggaaggacctgc 532 Query: 840 tgctcggaatgcagctgcacaagcgcatcattgagagtggggtgctgcctgacctcaagg 899 |||| || |||||| ||||||||||| || | ||||| |||||| ||||||| | | || Sbjct: 533 tgctggggatgcaggtgcacaagcgcgtcctcgagagcggggtgttgcctgatcagaggg 592 Query: 900 tggagaatgcgctcgttgatatgtacgcagagtgtggccagatggaagcagcttgggatt 959 ||||||| || || |||||||||||||| ||||| ||| | ||||| || || |||| | Sbjct: 593 tggagaacgctctggttgatatgtacgccgagtgcggcgacatggacgcggcctgggtgt 652 Query: 960 tgtttgagggcatgcaagtgaggaatatcgtgtcctggacgtcggtaatctctgggtttg 1019 |||| ||||||||||| |||||| || | |||||||||||||||||| ||||| ||| Sbjct: 653 tgttcgagggcatgcagatgaggagcatggcgtcctggacgtcggtaatttctggccttg 712 Query: 1020 taagactacgccaggttaatcgggccagagcagtgtttgatggtatgcctgagagggaca 1079 | || | |||||||| |||| ||||| | |||||||| ||||||||| || |||| Sbjct: 713 tgaggtcaggccaggttgatcgtgccagggacctgtttgatcatatgcctgaaagagaca 772 Query: 1080 cggtctcatggaccgcaatgattgatggttatgtacaaactggtcagttccgagaggcac 1139 | || |||||||||| ||||| ||||| |||||||| ||| |||| | || ||| Sbjct: 773 ccatcgcatggaccgcgatgatcgatggctatgtacaggttggcaggttcagggacgcat 832 Query: 1140 tggagatgtttcgtgagatgcagtttagcaaggtgaaggcagacgagttcaccatggtca 1199 |||||| || ||| | |||||| || ||||||||| ||||| |||||||||||||||| Sbjct: 833 tggagacattccgttacatgcagatttgcaaggtgagagcagatgagttcaccatggtca 892 Query: 1200 gcatagtcacggcgtgcgcgcagcttggtgctttagagacaggggaatgggctagaatct 1259 | | ||||| || || || ||||| |||||| | ||||||||||||||||| || || | Sbjct: 893 gtgtggtcactgcctgtgcccagctaggtgctctggagacaggggaatgggcaaggattt 952 Query: 1260 acatgaatagacatgggatcaagatggatacttttgtcgggaatgcgctcatagacatgt 1319 ||||| |||| |||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 953 acatgggaagacttgggatcaagatggatgtttttgtcgggaatgcactcatagacatgt 1012 Query: 1320 attcaaagtgtgggagtatcaagagggcattggacgtgttcaatgagatgcacagtagag 1379 | |||||||||||||| || || | |||||||| || ||||| || ||||||| |||| Sbjct: 1013 actcaaagtgtgggagcattgagcgcgcattggatgtattcaaagatatgcacaacagag 1072 Query: 1380 ataaatttacttggaccgctgttatacttggtcttgcagtgaatggccatggtgaggagg 1439 |||| ||||| ||||| || ||||||||||||| ||||||||||||| ||| ||||||| Sbjct: 1073 ataagtttacctggactgccattatacttggtctcgcagtgaatggccgtggggaggagg 1132 Query: 1440 ctatccatatgtttgacaggatgcttaggacgtttgaagctccagacgaggtgaccttca 1499 |||| | ||||| | || ||||| ||| | || || ||||||| |||||||||||| Sbjct: 1133 ctattgacatgttctatagaatgctcagggctttacaaactccagatgaggtgaccttcg 1192 Query: 1500 ttggcgtcctcactgcctgtactcatgctggcttggttgacgaaggacgagacttctttc 1559 |||| || ||||||||||| ||||||||||||||||||||| |||| ||||| ||||| | Sbjct: 1193 ttggtgttctcactgcctgcactcatgctggcttggttgacaaaggccgagagttcttcc 1252 Query: 1560 tcagcatgactgggacctacagcattgctccgaatgtgctgcattatggatgcataatcg 1619 |||||||||| | | | || | ||| | || | |||| ||||||| |||||| |||||| Sbjct: 1253 tcagcatgacagaggcatataatatttcccctactgtggtgcattacggatgcttaatcg 1312 Query: 1620 acctccttggccgagctgggaaactaagagaagctttggagacaataggtaaaatgccca 1679 | || | ||||||||||||||| ||| ||||| ||||| ||||||| |||||||||| Sbjct: 1313 atgtcttaggccgagctgggaaattaaaggaagcattggatacaatagacaaaatgccca 1372 Query: 1680 tgaaacccagctctgcaatttgggggaccctgctggcagcttgtagggtccatggtaact 1739 |||| |||| ||| | |||||||| |||||||||||| | |||||||| ||||||| | Sbjct: 1373 tgaagcccaactccactatttggggaaccctgctggcatcctgtagggtttatggtaatt 1432 Query: 1740 cagagataggtgaattggcagcagaacgtctccttgagttggatccagagaacagcatgg 1799 |||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||| | Sbjct: 1433 cagaaataggtgaattggcagcggagcgtctccttgagttggatccagataacagcacag 1492 Query: 1800 cttacgtccttttgtccaatctgtatgcaaaatctaatagatggggagatgtccggtggc 1859 | ||| || | ||||| || ||||||||||||||||||||||| ||||||||| || Sbjct: 1493 cgtacatcttgttgtcaaacatgtatgcaaaatctaatagatggaaagatgtccgacgga 1552 Query: 1860 ttaggcaggtaatgatggagaaaggaatcaagaaagagcctggctgcagtcttattgaaa 1919 |||||||| |||| ||||||||||||||||||||||| ||||| |||||| | ||||||| Sbjct: 1553 ttaggcagataataatggagaaaggaatcaagaaagaacctggttgcagtatgattgaaa 1612 Query: 1920 tgaatggcacaattcacgaatttgtagctggcgatagatctcatccgatgagcaaagaaa 1979 ||||||||| |||||||||||||||||| | ||||| |||||||| |||| ||||||| Sbjct: 1613 tgaatggcataattcacgaatttgtagccgctgataggtctcatcctatgaataaagaaa 1672 Query: 1980 tctattctaaattggacaaggtactcacggatttaaagaatgctgggtatgtacctgatg 2039 |||| || || ||||| || || || || ||||| | ||||||||| ||||| ||||||| Sbjct: 1673 tctactcaaagttggaaaatgtgctaactgatttgaggaatgctggatatgtgcctgatg 1732 Query: 2040 taactgaggtctttgttcaagtcacagaagaggaaaaacagaaagttctgtattggcaca 2099 ||||||||||| ||||| ||||||| ||||||||||| ||||| ||||| || ||||||| Sbjct: 1733 taactgaggtccttgttgaagtcacggaagaggaaaagcagaaggttctttactggcaca 1792 Query: 2100 gcgaaaagttggctgtcgcatttgcattactcgtatcagaatccagcatgacaataagga 2159 | || |||||||| ||| | ||||| |||||| |||||||| | | | ||||| | Sbjct: 1793 gtgagaagttggcagtcacttttgctttactcacttcagaatctaatgttatcataagaa 1852 Query: 2160 tagtgaaaaacttgaggatgtgtttggactgccacaatgcaattaaattgatcaccaatt 2219 | ||||||||||||||||||||||||||||||||||| ||||| |||||||| | || | Sbjct: 1853 ttgtgaaaaacttgaggatgtgtttggactgccacaacgcaataaaattgatatcgaaat 1912 Query: 2220 tgtatatgcgagaggttgttgtgagggacaggacacgcttccatcattttagacatgga 2278 ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 1913 tgtatggaagagaggtcattgtgagggataggacacgcttccatcattttagacatgga 1971 Score = 69.9 bits (35), Expect = 5e-08 Identities = 68/79 (86%) Strand = Plus / Plus Query: 438 gcatgctggcacgcggagccaggcctgatgcgtacacgttcccgccgttgctcaaggcga 497 |||||||||| |||| |||||||| || ||||||||||||||| | |||||||||||| Sbjct: 122 gcatgctggctggcggggccaggcccgacgcgtacacgttcccgtccttgctcaaggcgg 181 Query: 498 tggctgcggagcggggcgc 516 ||| |||| ||||||||| Sbjct: 182 cggcggcggcgcggggcgc 200 Score = 58.0 bits (29), Expect = 2e-04 Identities = 74/89 (83%) Strand = Plus / Plus Query: 543 tccacgcgcatgttgttaagtttgggctggagctcaacgcccacgtggctagctcgctgg 602 |||||||||| || |||||||| ||| ||||| ||||| |||| ||| ||||| ||| Sbjct: 233 tccacgcgcacgtggttaagttcgggatggagtcgaacgctcacgcggcgagctccctga 292 Query: 603 tactcatgtacgcggccaggggcgacggc 631 | ||||||||||||||||||| |||||| Sbjct: 293 tcgtcatgtacgcggccaggggagacggc 321
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 846 bits (427), Expect = 0.0 Identities = 1231/1499 (82%) Strand = Plus / Minus Query: 780 tggccactccggtcacctacatcacggtgctgtcagcatgtggcaaaggcaacgacgtcc 839 ||||||| ||||||||||| || ||||||| || || || || ||||| || ||| | | Sbjct: 3927975 tggccaccgcggtcacctacgtctcggtgctctcggcttgcgggaaagggaaggacctgc 3927916 Query: 840 tgctcggaatgcagctgcacaagcgcatcattgagagtggggtgctgcctgacctcaagg 899 |||| || |||||| ||||||||||| || | ||||| |||||| ||||||| | | || Sbjct: 3927915 tgctggggatgcaggtgcacaagcgcgtcctcgagagcggggtgttgcctgatcagaggg 3927856 Query: 900 tggagaatgcgctcgttgatatgtacgcagagtgtggccagatggaagcagcttgggatt 959 ||||||| || || |||||||||||||| ||||| ||| | ||||| || || |||| | Sbjct: 3927855 tggagaacgctctggttgatatgtacgccgagtgcggcgacatggacgcggcctgggtgt 3927796 Query: 960 tgtttgagggcatgcaagtgaggaatatcgtgtcctggacgtcggtaatctctgggtttg 1019 |||| ||||||||||| |||||| || | |||||||||||||||||| ||||| ||| Sbjct: 3927795 tgttcgagggcatgcagatgaggagcatggcgtcctggacgtcggtaatttctggccttg 3927736 Query: 1020 taagactacgccaggttaatcgggccagagcagtgtttgatggtatgcctgagagggaca 1079 | || | |||||||| |||| ||||| | |||||||| ||||||||| || |||| Sbjct: 3927735 tgaggtcaggccaggttgatcgtgccagggacctgtttgatcatatgcctgaaagagaca 3927676 Query: 1080 cggtctcatggaccgcaatgattgatggttatgtacaaactggtcagttccgagaggcac 1139 | || |||||||||| ||||| ||||| |||||||| ||| |||| | || ||| Sbjct: 3927675 ccatcgcatggaccgcgatgatcgatggctatgtacaggttggcaggttcagggacgcat 3927616 Query: 1140 tggagatgtttcgtgagatgcagtttagcaaggtgaaggcagacgagttcaccatggtca 1199 |||||| || ||| | |||||| || ||||||||| ||||| |||||||||||||||| Sbjct: 3927615 tggagacattccgttacatgcagatttgcaaggtgagagcagatgagttcaccatggtca 3927556 Query: 1200 gcatagtcacggcgtgcgcgcagcttggtgctttagagacaggggaatgggctagaatct 1259 | | ||||| || || || ||||| |||||| | ||||||||||||||||| || || | Sbjct: 3927555 gtgtggtcactgcctgtgcccagctaggtgctctggagacaggggaatgggcaaggattt 3927496 Query: 1260 acatgaatagacatgggatcaagatggatacttttgtcgggaatgcgctcatagacatgt 1319 ||||| |||| |||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 3927495 acatgggaagacttgggatcaagatggatgtttttgtcgggaatgcactcatagacatgt 3927436 Query: 1320 attcaaagtgtgggagtatcaagagggcattggacgtgttcaatgagatgcacagtagag 1379 | |||||||||||||| || || | |||||||| || ||||| || ||||||| |||| Sbjct: 3927435 actcaaagtgtgggagcattgagcgcgcattggatgtattcaaagatatgcacaacagag 3927376 Query: 1380 ataaatttacttggaccgctgttatacttggtcttgcagtgaatggccatggtgaggagg 1439 |||| ||||| ||||| || ||||||||||||| ||||||||||||| ||| ||||||| Sbjct: 3927375 ataagtttacctggactgccattatacttggtctcgcagtgaatggccgtggggaggagg 3927316 Query: 1440 ctatccatatgtttgacaggatgcttaggacgtttgaagctccagacgaggtgaccttca 1499 |||| | ||||| | || ||||| ||| | || || ||||||| |||||||||||| Sbjct: 3927315 ctattgacatgttctatagaatgctcagggctttacaaactccagatgaggtgaccttcg 3927256 Query: 1500 ttggcgtcctcactgcctgtactcatgctggcttggttgacgaaggacgagacttctttc 1559 |||| || ||||||||||| ||||||||||||||||||||| |||| ||||| ||||| | Sbjct: 3927255 ttggtgttctcactgcctgcactcatgctggcttggttgacaaaggccgagagttcttcc 3927196 Query: 1560 tcagcatgactgggacctacagcattgctccgaatgtgctgcattatggatgcataatcg 1619 |||||||||| | | | || | ||| | || | |||| ||||||| |||||| |||||| Sbjct: 3927195 tcagcatgacagaggcatataatatttcccctactgtggtgcattacggatgcttaatcg 3927136 Query: 1620 acctccttggccgagctgggaaactaagagaagctttggagacaataggtaaaatgccca 1679 | || | ||||||||||||||| ||| ||||| ||||| ||||||| |||||||||| Sbjct: 3927135 atgtcttaggccgagctgggaaattaaaggaagcattggatacaatagacaaaatgccca 3927076 Query: 1680 tgaaacccagctctgcaatttgggggaccctgctggcagcttgtagggtccatggtaact 1739 |||| |||| ||| | |||||||| |||||||||||| | |||||||| ||||||| | Sbjct: 3927075 tgaagcccaactccactatttggggaaccctgctggcatcctgtagggtttatggtaatt 3927016 Query: 1740 cagagataggtgaattggcagcagaacgtctccttgagttggatccagagaacagcatgg 1799 |||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||| | Sbjct: 3927015 cagaaataggtgaattggcagcggagcgtctccttgagttggatccagataacagcacag 3926956 Query: 1800 cttacgtccttttgtccaatctgtatgcaaaatctaatagatggggagatgtccggtggc 1859 | ||| || | ||||| || ||||||||||||||||||||||| ||||||||| || Sbjct: 3926955 cgtacatcttgttgtcaaacatgtatgcaaaatctaatagatggaaagatgtccgacgga 3926896 Query: 1860 ttaggcaggtaatgatggagaaaggaatcaagaaagagcctggctgcagtcttattgaaa 1919 |||||||| |||| ||||||||||||||||||||||| ||||| |||||| | ||||||| Sbjct: 3926895 ttaggcagataataatggagaaaggaatcaagaaagaacctggttgcagtatgattgaaa 3926836 Query: 1920 tgaatggcacaattcacgaatttgtagctggcgatagatctcatccgatgagcaaagaaa 1979 ||||||||| |||||||||||||||||| | ||||| |||||||| |||| ||||||| Sbjct: 3926835 tgaatggcataattcacgaatttgtagccgctgataggtctcatcctatgaataaagaaa 3926776 Query: 1980 tctattctaaattggacaaggtactcacggatttaaagaatgctgggtatgtacctgatg 2039 |||| || || ||||| || || || || ||||| | ||||||||| ||||| ||||||| Sbjct: 3926775 tctactcaaagttggaaaatgtgctaactgatttgaggaatgctggatatgtgcctgatg 3926716 Query: 2040 taactgaggtctttgttcaagtcacagaagaggaaaaacagaaagttctgtattggcaca 2099 ||||||||||| ||||| ||||||| ||||||||||| ||||| ||||| || ||||||| Sbjct: 3926715 taactgaggtccttgttgaagtcacggaagaggaaaagcagaaggttctttactggcaca 3926656 Query: 2100 gcgaaaagttggctgtcgcatttgcattactcgtatcagaatccagcatgacaataagga 2159 | || |||||||| ||| | ||||| |||||| |||||||| | | | ||||| | Sbjct: 3926655 gtgagaagttggcagtcacttttgctttactcacttcagaatctaatgttatcataagaa 3926596 Query: 2160 tagtgaaaaacttgaggatgtgtttggactgccacaatgcaattaaattgatcaccaatt 2219 | ||||||||||||||||||||||||||||||||||| ||||| |||||||| | || | Sbjct: 3926595 ttgtgaaaaacttgaggatgtgtttggactgccacaacgcaataaaattgatatcgaaat 3926536 Query: 2220 tgtatatgcgagaggttgttgtgagggacaggacacgcttccatcattttagacatgga 2278 ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 3926535 tgtatggaagagaggtcattgtgagggataggacacgcttccatcattttagacatgga 3926477 Score = 69.9 bits (35), Expect = 5e-08 Identities = 68/79 (86%) Strand = Plus / Minus Query: 438 gcatgctggcacgcggagccaggcctgatgcgtacacgttcccgccgttgctcaaggcga 497 |||||||||| |||| |||||||| || ||||||||||||||| | |||||||||||| Sbjct: 3928326 gcatgctggctggcggggccaggcccgacgcgtacacgttcccgtccttgctcaaggcgg 3928267 Query: 498 tggctgcggagcggggcgc 516 ||| |||| ||||||||| Sbjct: 3928266 cggcggcggcgcggggcgc 3928248 Score = 58.0 bits (29), Expect = 2e-04 Identities = 74/89 (83%) Strand = Plus / Minus Query: 543 tccacgcgcatgttgttaagtttgggctggagctcaacgcccacgtggctagctcgctgg 602 |||||||||| || |||||||| ||| ||||| ||||| |||| ||| ||||| ||| Sbjct: 3928215 tccacgcgcacgtggttaagttcgggatggagtcgaacgctcacgcggcgagctccctga 3928156 Query: 603 tactcatgtacgcggccaggggcgacggc 631 | ||||||||||||||||||| |||||| Sbjct: 3928155 tcgtcatgtacgcggccaggggagacggc 3928127
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 846 bits (427), Expect = 0.0 Identities = 1231/1499 (82%) Strand = Plus / Minus Query: 780 tggccactccggtcacctacatcacggtgctgtcagcatgtggcaaaggcaacgacgtcc 839 ||||||| ||||||||||| || ||||||| || || || || ||||| || ||| | | Sbjct: 49879 tggccaccgcggtcacctacgtctcggtgctctcggcttgcgggaaagggaaggacctgc 49820 Query: 840 tgctcggaatgcagctgcacaagcgcatcattgagagtggggtgctgcctgacctcaagg 899 |||| || |||||| ||||||||||| || | ||||| |||||| ||||||| | | || Sbjct: 49819 tgctggggatgcaggtgcacaagcgcgtcctcgagagcggggtgttgcctgatcagaggg 49760 Query: 900 tggagaatgcgctcgttgatatgtacgcagagtgtggccagatggaagcagcttgggatt 959 ||||||| || || |||||||||||||| ||||| ||| | ||||| || || |||| | Sbjct: 49759 tggagaacgctctggttgatatgtacgccgagtgcggcgacatggacgcggcctgggtgt 49700 Query: 960 tgtttgagggcatgcaagtgaggaatatcgtgtcctggacgtcggtaatctctgggtttg 1019 |||| ||||||||||| |||||| || | |||||||||||||||||| ||||| ||| Sbjct: 49699 tgttcgagggcatgcagatgaggagcatggcgtcctggacgtcggtaatttctggccttg 49640 Query: 1020 taagactacgccaggttaatcgggccagagcagtgtttgatggtatgcctgagagggaca 1079 | || | |||||||| |||| ||||| | |||||||| ||||||||| || |||| Sbjct: 49639 tgaggtcaggccaggttgatcgtgccagggacctgtttgatcatatgcctgaaagagaca 49580 Query: 1080 cggtctcatggaccgcaatgattgatggttatgtacaaactggtcagttccgagaggcac 1139 | || |||||||||| ||||| ||||| |||||||| ||| |||| | || ||| Sbjct: 49579 ccatcgcatggaccgcgatgatcgatggctatgtacaggttggcaggttcagggacgcat 49520 Query: 1140 tggagatgtttcgtgagatgcagtttagcaaggtgaaggcagacgagttcaccatggtca 1199 |||||| || ||| | |||||| || ||||||||| ||||| |||||||||||||||| Sbjct: 49519 tggagacattccgttacatgcagatttgcaaggtgagagcagatgagttcaccatggtca 49460 Query: 1200 gcatagtcacggcgtgcgcgcagcttggtgctttagagacaggggaatgggctagaatct 1259 | | ||||| || || || ||||| |||||| | ||||||||||||||||| || || | Sbjct: 49459 gtgtggtcactgcctgtgcccagctaggtgctctggagacaggggaatgggcaaggattt 49400 Query: 1260 acatgaatagacatgggatcaagatggatacttttgtcgggaatgcgctcatagacatgt 1319 ||||| |||| |||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 49399 acatgggaagacttgggatcaagatggatgtttttgtcgggaatgcactcatagacatgt 49340 Query: 1320 attcaaagtgtgggagtatcaagagggcattggacgtgttcaatgagatgcacagtagag 1379 | |||||||||||||| || || | |||||||| || ||||| || ||||||| |||| Sbjct: 49339 actcaaagtgtgggagcattgagcgcgcattggatgtattcaaagatatgcacaacagag 49280 Query: 1380 ataaatttacttggaccgctgttatacttggtcttgcagtgaatggccatggtgaggagg 1439 |||| ||||| ||||| || ||||||||||||| ||||||||||||| ||| ||||||| Sbjct: 49279 ataagtttacctggactgccattatacttggtctcgcagtgaatggccgtggggaggagg 49220 Query: 1440 ctatccatatgtttgacaggatgcttaggacgtttgaagctccagacgaggtgaccttca 1499 |||| | ||||| | || ||||| ||| | || || ||||||| |||||||||||| Sbjct: 49219 ctattgacatgttctatagaatgctcagggctttacaaactccagatgaggtgaccttcg 49160 Query: 1500 ttggcgtcctcactgcctgtactcatgctggcttggttgacgaaggacgagacttctttc 1559 |||| || ||||||||||| ||||||||||||||||||||| |||| ||||| ||||| | Sbjct: 49159 ttggtgttctcactgcctgcactcatgctggcttggttgacaaaggccgagagttcttcc 49100 Query: 1560 tcagcatgactgggacctacagcattgctccgaatgtgctgcattatggatgcataatcg 1619 |||||||||| | | | || | ||| | || | |||| ||||||| |||||| |||||| Sbjct: 49099 tcagcatgacagaggcatataatatttcccctactgtggtgcattacggatgcttaatcg 49040 Query: 1620 acctccttggccgagctgggaaactaagagaagctttggagacaataggtaaaatgccca 1679 | || | ||||||||||||||| ||| ||||| ||||| ||||||| |||||||||| Sbjct: 49039 atgtcttaggccgagctgggaaattaaaggaagcattggatacaatagacaaaatgccca 48980 Query: 1680 tgaaacccagctctgcaatttgggggaccctgctggcagcttgtagggtccatggtaact 1739 |||| |||| ||| | |||||||| |||||||||||| | |||||||| ||||||| | Sbjct: 48979 tgaagcccaactccactatttggggaaccctgctggcatcctgtagggtttatggtaatt 48920 Query: 1740 cagagataggtgaattggcagcagaacgtctccttgagttggatccagagaacagcatgg 1799 |||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||| | Sbjct: 48919 cagaaataggtgaattggcagcggagcgtctccttgagttggatccagataacagcacag 48860 Query: 1800 cttacgtccttttgtccaatctgtatgcaaaatctaatagatggggagatgtccggtggc 1859 | ||| || | ||||| || ||||||||||||||||||||||| ||||||||| || Sbjct: 48859 cgtacatcttgttgtcaaacatgtatgcaaaatctaatagatggaaagatgtccgacgga 48800 Query: 1860 ttaggcaggtaatgatggagaaaggaatcaagaaagagcctggctgcagtcttattgaaa 1919 |||||||| |||| ||||||||||||||||||||||| ||||| |||||| | ||||||| Sbjct: 48799 ttaggcagataataatggagaaaggaatcaagaaagaacctggttgcagtatgattgaaa 48740 Query: 1920 tgaatggcacaattcacgaatttgtagctggcgatagatctcatccgatgagcaaagaaa 1979 ||||||||| |||||||||||||||||| | ||||| |||||||| |||| ||||||| Sbjct: 48739 tgaatggcataattcacgaatttgtagccgctgataggtctcatcctatgaataaagaaa 48680 Query: 1980 tctattctaaattggacaaggtactcacggatttaaagaatgctgggtatgtacctgatg 2039 |||| || || ||||| || || || || ||||| | ||||||||| ||||| ||||||| Sbjct: 48679 tctactcaaagttggaaaatgtgctaactgatttgaggaatgctggatatgtgcctgatg 48620 Query: 2040 taactgaggtctttgttcaagtcacagaagaggaaaaacagaaagttctgtattggcaca 2099 ||||||||||| ||||| ||||||| ||||||||||| ||||| ||||| || ||||||| Sbjct: 48619 taactgaggtccttgttgaagtcacggaagaggaaaagcagaaggttctttactggcaca 48560 Query: 2100 gcgaaaagttggctgtcgcatttgcattactcgtatcagaatccagcatgacaataagga 2159 | || |||||||| ||| | ||||| |||||| |||||||| | | | ||||| | Sbjct: 48559 gtgagaagttggcagtcacttttgctttactcacttcagaatctaatgttatcataagaa 48500 Query: 2160 tagtgaaaaacttgaggatgtgtttggactgccacaatgcaattaaattgatcaccaatt 2219 | ||||||||||||||||||||||||||||||||||| ||||| |||||||| | || | Sbjct: 48499 ttgtgaaaaacttgaggatgtgtttggactgccacaacgcaataaaattgatatcgaaat 48440 Query: 2220 tgtatatgcgagaggttgttgtgagggacaggacacgcttccatcattttagacatgga 2278 ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 48439 tgtatggaagagaggtcattgtgagggataggacacgcttccatcattttagacatgga 48381 Score = 69.9 bits (35), Expect = 5e-08 Identities = 68/79 (86%) Strand = Plus / Minus Query: 438 gcatgctggcacgcggagccaggcctgatgcgtacacgttcccgccgttgctcaaggcga 497 |||||||||| |||| |||||||| || ||||||||||||||| | |||||||||||| Sbjct: 50230 gcatgctggctggcggggccaggcccgacgcgtacacgttcccgtccttgctcaaggcgg 50171 Query: 498 tggctgcggagcggggcgc 516 ||| |||| ||||||||| Sbjct: 50170 cggcggcggcgcggggcgc 50152 Score = 58.0 bits (29), Expect = 2e-04 Identities = 74/89 (83%) Strand = Plus / Minus Query: 543 tccacgcgcatgttgttaagtttgggctggagctcaacgcccacgtggctagctcgctgg 602 |||||||||| || |||||||| ||| ||||| ||||| |||| ||| ||||| ||| Sbjct: 50119 tccacgcgcacgtggttaagttcgggatggagtcgaacgctcacgcggcgagctccctga 50060 Query: 603 tactcatgtacgcggccaggggcgacggc 631 | ||||||||||||||||||| |||||| Sbjct: 50059 tcgtcatgtacgcggccaggggagacggc 50031
>gb|AC147877.10| Medicago truncatula clone mth2-9b13, complete sequence Length = 122251 Score = 52.0 bits (26), Expect = 0.012 Identities = 26/26 (100%) Strand = Plus / Minus Query: 1307 ctcatagacatgtattcaaagtgtgg 1332 |||||||||||||||||||||||||| Sbjct: 54865 ctcatagacatgtattcaaagtgtgg 54840
>gb|AC140849.8| Medicago truncatula clone mth2-17f20, complete sequence Length = 136131 Score = 52.0 bits (26), Expect = 0.012 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1307 ctcatagacatgtattcaaagtgtgg 1332 |||||||||||||||||||||||||| Sbjct: 15314 ctcatagacatgtattcaaagtgtgg 15339
>emb|CR855219.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0140J09, complete sequence Length = 81683 Score = 46.1 bits (23), Expect = 0.72 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1307 ctcatagacatgtattcaaagtgtggg 1333 ||||||||||||||||| ||||||||| Sbjct: 25220 ctcatagacatgtattccaagtgtggg 25194
>ref|NM_001059842.1| Oryza sativa (japonica cultivar-group) Os04g0514500 (Os04g0514500) mRNA, complete cds Length = 4122 Score = 46.1 bits (23), Expect = 0.72 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1307 ctcatagacatgtattcaaagtgtggg 1333 ||||||||||||||||| ||||||||| Sbjct: 2341 ctcatagacatgtattccaagtgtggg 2367
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 46.1 bits (23), Expect = 0.72 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1307 ctcatagacatgtattcaaagtgtggg 1333 ||||||||||||||||| ||||||||| Sbjct: 25678537 ctcatagacatgtattccaagtgtggg 25678511
>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16, complete sequence Length = 130718 Score = 46.1 bits (23), Expect = 0.72 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1307 ctcatagacatgtattcaaagtgtggg 1333 ||||||||||||||||| ||||||||| Sbjct: 58264 ctcatagacatgtattccaagtgtggg 58238
>emb|AL929091.28| Human DNA sequence from clone XXyac-960E7 on chromosome 1, complete sequence Length = 70616 Score = 46.1 bits (23), Expect = 0.72 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2057 caagtcacagaagaggaaaaaca 2079 ||||||||||||||||||||||| Sbjct: 20800 caagtcacagaagaggaaaaaca 20778
>dbj|AK121876.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033104I01, full insert sequence Length = 4125 Score = 46.1 bits (23), Expect = 0.72 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1307 ctcatagacatgtattcaaagtgtggg 1333 ||||||||||||||||| ||||||||| Sbjct: 2344 ctcatagacatgtattccaagtgtggg 2370
>emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01, complete sequence Length = 127712 Score = 46.1 bits (23), Expect = 0.72 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1307 ctcatagacatgtattcaaagtgtggg 1333 ||||||||||||||||| ||||||||| Sbjct: 1464 ctcatagacatgtattccaagtgtggg 1438
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 44.1 bits (22), Expect = 2.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 119 ccaccgctcccgctgtcccgcagccg 144 ||||||||||||||||| |||||||| Sbjct: 3277377 ccaccgctcccgctgtcgcgcagccg 3277402
>gb|AC144807.23| Medicago truncatula clone mth2-9j13, complete sequence Length = 115904 Score = 44.1 bits (22), Expect = 2.8 Identities = 28/30 (93%) Strand = Plus / Minus Query: 1087 atggaccgcaatgattgatggttatgtaca 1116 |||||| ||||||||| ||||||||||||| Sbjct: 15756 atggactgcaatgattaatggttatgtaca 15727
>gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome 5, complete sequence Length = 160517 Score = 44.1 bits (22), Expect = 2.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 2811 aatttgtaatgaactaaaaacattga 2836 ||||||||||||| |||||||||||| Sbjct: 96718 aatttgtaatgaattaaaaacattga 96693
>gb|AC127292.4| Mus musculus BAC clone RP23-375J3 from chromosome 9, complete sequence Length = 157088 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1070 gagagggacacggtctcatgga 1091 |||||||||||||||||||||| Sbjct: 128308 gagagggacacggtctcatgga 128329
>gb|AC123824.4| Mus musculus BAC clone RP24-84D16 from chromosome 12, complete sequence Length = 205607 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 737 ctgtcatgctgctctttcctgg 758 |||||||||||||||||||||| Sbjct: 56683 ctgtcatgctgctctttcctgg 56662
>gb|AC106880.4| Homo sapiens BAC clone RP11-709E23 from 4, complete sequence Length = 67361 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1868 gtaatgatggagaaaggaatca 1889 |||||||||||||||||||||| Sbjct: 6943 gtaatgatggagaaaggaatca 6922
>emb|AL353575.24| Human DNA sequence from clone RP3-433O4 on chromosome X, complete sequence Length = 70581 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2718 tttactgttaggtgtgtagtga 2739 |||||||||||||||||||||| Sbjct: 48778 tttactgttaggtgtgtagtga 48799
>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence Length = 245443 Score = 44.1 bits (22), Expect = 2.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 2811 aatttgtaatgaactaaaaacattga 2836 ||||||||||||| |||||||||||| Sbjct: 166298 aatttgtaatgaattaaaaacattga 166273
>dbj|AP006365.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT31H17, TM0171, complete sequence Length = 126380 Score = 44.1 bits (22), Expect = 2.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1307 ctcatagacatgtattcaaagtgtgg 1332 |||||||| ||||||||||||||||| Sbjct: 120047 ctcatagatatgtattcaaagtgtgg 120022
>gb|AC144813.3| Mus musculus BAC clone RP24-324I23 from 9, complete sequence Length = 146104 Score = 44.1 bits (22), Expect = 2.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1070 gagagggacacggtctcatgga 1091 |||||||||||||||||||||| Sbjct: 106950 gagagggacacggtctcatgga 106929
>gb|AY496155.1| Capsicum annuum DREB-like protein 1 mRNA, complete cds Length = 1085 Score = 44.1 bits (22), Expect = 2.8 Identities = 28/30 (93%) Strand = Plus / Plus Query: 2799 agttggtagttgaatttgtaatgaactaaa 2828 |||||||||||| |||||||||||| |||| Sbjct: 1018 agttggtagttgtatttgtaatgaaataaa 1047 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 496,759,124 Number of extensions: 27271568 Number of successful extensions: 152687 Number of sequences better than 10.0: 23 Number of HSP's gapped: 152681 Number of HSP's successfully gapped: 41 Length of query: 2920 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2897 Effective length of database: 18,503,978,556 Effective search space: 53606025876732 Effective search space used: 53606025876732 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)