ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf35j01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001048715.1| Oryza sativa (japonica cultivar-group) Os01g... 846 0.0
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 846 0.0
3dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic D... 846 0.0
4gb|AC147877.10| Medicago truncatula clone mth2-9b13, complete se... 52 0.012
5gb|AC140849.8| Medicago truncatula clone mth2-17f20, complete se... 52 0.012
6emb|CR855219.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 46 0.72
7ref|NM_001059842.1| Oryza sativa (japonica cultivar-group) Os04g... 46 0.72
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.72
9emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4,... 46 0.72
10emb|AL929091.28| Human DNA sequence from clone XXyac-960E7 on ch... 46 0.72
11dbj|AK121876.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.72
12emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4,... 46 0.72
13gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 44 2.8
14gb|AC144807.23| Medicago truncatula clone mth2-9j13, complete se... 44 2.8
15gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome... 44 2.8
16gb|AC127292.4| Mus musculus BAC clone RP23-375J3 from chromosome... 44 2.8
17gb|AC123824.4| Mus musculus BAC clone RP24-84D16 from chromosome... 44 2.8
18gb|AC106880.4| Homo sapiens BAC clone RP11-709E23 from 4, comple... 44 2.8
19emb|AL353575.24| Human DNA sequence from clone RP3-433O4 on chro... 44 2.8
20gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome... 44 2.8
21dbj|AP006365.1| Lotus japonicus genomic DNA, chromosome 1, clone... 44 2.8
22gb|AC144813.3| Mus musculus BAC clone RP24-324I23 from 9, comple... 44 2.8
23gb|AY496155.1| Capsicum annuum DREB-like protein 1 mRNA, complet... 44 2.8

>ref|NM_001048715.1| Oryza sativa (japonica cultivar-group) Os01g0176300 (Os01g0176300)
            mRNA, complete cds
          Length = 1998
 Score =  846 bits (427), Expect = 0.0
 Identities = 1231/1499 (82%)
 Strand = Plus / Plus

                                                                        
Query: 780  tggccactccggtcacctacatcacggtgctgtcagcatgtggcaaaggcaacgacgtcc 839
            |||||||  ||||||||||| || ||||||| || || || || ||||| || ||| | |
Sbjct: 473  tggccaccgcggtcacctacgtctcggtgctctcggcttgcgggaaagggaaggacctgc 532

                                                                        
Query: 840  tgctcggaatgcagctgcacaagcgcatcattgagagtggggtgctgcctgacctcaagg 899
            |||| || |||||| ||||||||||| || | ||||| |||||| ||||||| |  | ||
Sbjct: 533  tgctggggatgcaggtgcacaagcgcgtcctcgagagcggggtgttgcctgatcagaggg 592

                                                                        
Query: 900  tggagaatgcgctcgttgatatgtacgcagagtgtggccagatggaagcagcttgggatt 959
            ||||||| || || |||||||||||||| ||||| ||| | ||||| || || ||||  |
Sbjct: 593  tggagaacgctctggttgatatgtacgccgagtgcggcgacatggacgcggcctgggtgt 652

                                                                        
Query: 960  tgtttgagggcatgcaagtgaggaatatcgtgtcctggacgtcggtaatctctgggtttg 1019
            |||| |||||||||||  ||||||  || | |||||||||||||||||| |||||  |||
Sbjct: 653  tgttcgagggcatgcagatgaggagcatggcgtcctggacgtcggtaatttctggccttg 712

                                                                        
Query: 1020 taagactacgccaggttaatcgggccagagcagtgtttgatggtatgcctgagagggaca 1079
            | ||   | |||||||| |||| ||||| |   ||||||||  ||||||||| || ||||
Sbjct: 713  tgaggtcaggccaggttgatcgtgccagggacctgtttgatcatatgcctgaaagagaca 772

                                                                        
Query: 1080 cggtctcatggaccgcaatgattgatggttatgtacaaactggtcagttccgagaggcac 1139
            |  || |||||||||| ||||| ||||| ||||||||   |||   |||| | || ||| 
Sbjct: 773  ccatcgcatggaccgcgatgatcgatggctatgtacaggttggcaggttcagggacgcat 832

                                                                        
Query: 1140 tggagatgtttcgtgagatgcagtttagcaaggtgaaggcagacgagttcaccatggtca 1199
            ||||||  || ||| | |||||| || |||||||||  ||||| ||||||||||||||||
Sbjct: 833  tggagacattccgttacatgcagatttgcaaggtgagagcagatgagttcaccatggtca 892

                                                                        
Query: 1200 gcatagtcacggcgtgcgcgcagcttggtgctttagagacaggggaatgggctagaatct 1259
            |  | ||||| || || || ||||| |||||| | ||||||||||||||||| || || |
Sbjct: 893  gtgtggtcactgcctgtgcccagctaggtgctctggagacaggggaatgggcaaggattt 952

                                                                        
Query: 1260 acatgaatagacatgggatcaagatggatacttttgtcgggaatgcgctcatagacatgt 1319
            |||||   |||| ||||||||||||||||  ||||||||||||||| |||||||||||||
Sbjct: 953  acatgggaagacttgggatcaagatggatgtttttgtcgggaatgcactcatagacatgt 1012

                                                                        
Query: 1320 attcaaagtgtgggagtatcaagagggcattggacgtgttcaatgagatgcacagtagag 1379
            | |||||||||||||| ||  || | |||||||| || ||||| || |||||||  ||||
Sbjct: 1013 actcaaagtgtgggagcattgagcgcgcattggatgtattcaaagatatgcacaacagag 1072

                                                                        
Query: 1380 ataaatttacttggaccgctgttatacttggtcttgcagtgaatggccatggtgaggagg 1439
            |||| ||||| ||||| ||  ||||||||||||| ||||||||||||| ||| |||||||
Sbjct: 1073 ataagtttacctggactgccattatacttggtctcgcagtgaatggccgtggggaggagg 1132

                                                                        
Query: 1440 ctatccatatgtttgacaggatgcttaggacgtttgaagctccagacgaggtgaccttca 1499
            ||||  | |||||  | || ||||| ||| | ||  || ||||||| |||||||||||| 
Sbjct: 1133 ctattgacatgttctatagaatgctcagggctttacaaactccagatgaggtgaccttcg 1192

                                                                        
Query: 1500 ttggcgtcctcactgcctgtactcatgctggcttggttgacgaaggacgagacttctttc 1559
            |||| || ||||||||||| ||||||||||||||||||||| |||| ||||| ||||| |
Sbjct: 1193 ttggtgttctcactgcctgcactcatgctggcttggttgacaaaggccgagagttcttcc 1252

                                                                        
Query: 1560 tcagcatgactgggacctacagcattgctccgaatgtgctgcattatggatgcataatcg 1619
            |||||||||| | | | || |  ||| | || | |||| ||||||| |||||| ||||||
Sbjct: 1253 tcagcatgacagaggcatataatatttcccctactgtggtgcattacggatgcttaatcg 1312

                                                                        
Query: 1620 acctccttggccgagctgggaaactaagagaagctttggagacaataggtaaaatgccca 1679
            |  || | ||||||||||||||| |||  ||||| ||||| |||||||  ||||||||||
Sbjct: 1313 atgtcttaggccgagctgggaaattaaaggaagcattggatacaatagacaaaatgccca 1372

                                                                        
Query: 1680 tgaaacccagctctgcaatttgggggaccctgctggcagcttgtagggtccatggtaact 1739
            |||| |||| |||  | |||||||| |||||||||||| | ||||||||  ||||||| |
Sbjct: 1373 tgaagcccaactccactatttggggaaccctgctggcatcctgtagggtttatggtaatt 1432

                                                                        
Query: 1740 cagagataggtgaattggcagcagaacgtctccttgagttggatccagagaacagcatgg 1799
            |||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||  |
Sbjct: 1433 cagaaataggtgaattggcagcggagcgtctccttgagttggatccagataacagcacag 1492

                                                                        
Query: 1800 cttacgtccttttgtccaatctgtatgcaaaatctaatagatggggagatgtccggtggc 1859
            | ||| || | ||||| ||  |||||||||||||||||||||||  |||||||||  || 
Sbjct: 1493 cgtacatcttgttgtcaaacatgtatgcaaaatctaatagatggaaagatgtccgacgga 1552

                                                                        
Query: 1860 ttaggcaggtaatgatggagaaaggaatcaagaaagagcctggctgcagtcttattgaaa 1919
            |||||||| |||| ||||||||||||||||||||||| ||||| |||||| | |||||||
Sbjct: 1553 ttaggcagataataatggagaaaggaatcaagaaagaacctggttgcagtatgattgaaa 1612

                                                                        
Query: 1920 tgaatggcacaattcacgaatttgtagctggcgatagatctcatccgatgagcaaagaaa 1979
            ||||||||| |||||||||||||||||| |  ||||| |||||||| ||||  |||||||
Sbjct: 1613 tgaatggcataattcacgaatttgtagccgctgataggtctcatcctatgaataaagaaa 1672

                                                                        
Query: 1980 tctattctaaattggacaaggtactcacggatttaaagaatgctgggtatgtacctgatg 2039
            |||| || || ||||| || || || || ||||| | ||||||||| ||||| |||||||
Sbjct: 1673 tctactcaaagttggaaaatgtgctaactgatttgaggaatgctggatatgtgcctgatg 1732

                                                                        
Query: 2040 taactgaggtctttgttcaagtcacagaagaggaaaaacagaaagttctgtattggcaca 2099
            ||||||||||| ||||| ||||||| ||||||||||| ||||| ||||| || |||||||
Sbjct: 1733 taactgaggtccttgttgaagtcacggaagaggaaaagcagaaggttctttactggcaca 1792

                                                                        
Query: 2100 gcgaaaagttggctgtcgcatttgcattactcgtatcagaatccagcatgacaataagga 2159
            | || |||||||| ||| | ||||| ||||||   |||||||| |   | |  ||||| |
Sbjct: 1793 gtgagaagttggcagtcacttttgctttactcacttcagaatctaatgttatcataagaa 1852

                                                                        
Query: 2160 tagtgaaaaacttgaggatgtgtttggactgccacaatgcaattaaattgatcaccaatt 2219
            | ||||||||||||||||||||||||||||||||||| ||||| ||||||||  | || |
Sbjct: 1853 ttgtgaaaaacttgaggatgtgtttggactgccacaacgcaataaaattgatatcgaaat 1912

                                                                       
Query: 2220 tgtatatgcgagaggttgttgtgagggacaggacacgcttccatcattttagacatgga 2278
            |||||    |||||||  |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1913 tgtatggaagagaggtcattgtgagggataggacacgcttccatcattttagacatgga 1971



 Score = 69.9 bits (35), Expect = 5e-08
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                       
Query: 438 gcatgctggcacgcggagccaggcctgatgcgtacacgttcccgccgttgctcaaggcga 497
           ||||||||||  |||| |||||||| || ||||||||||||||| | |||||||||||| 
Sbjct: 122 gcatgctggctggcggggccaggcccgacgcgtacacgttcccgtccttgctcaaggcgg 181

                              
Query: 498 tggctgcggagcggggcgc 516
            ||| |||| |||||||||
Sbjct: 182 cggcggcggcgcggggcgc 200



 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 74/89 (83%)
 Strand = Plus / Plus

                                                                       
Query: 543 tccacgcgcatgttgttaagtttgggctggagctcaacgcccacgtggctagctcgctgg 602
           |||||||||| || |||||||| ||| |||||   ||||| |||| ||| ||||| ||| 
Sbjct: 233 tccacgcgcacgtggttaagttcgggatggagtcgaacgctcacgcggcgagctccctga 292

                                        
Query: 603 tactcatgtacgcggccaggggcgacggc 631
           |  ||||||||||||||||||| ||||||
Sbjct: 293 tcgtcatgtacgcggccaggggagacggc 321



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score =  846 bits (427), Expect = 0.0
 Identities = 1231/1499 (82%)
 Strand = Plus / Minus

                                                                           
Query: 780     tggccactccggtcacctacatcacggtgctgtcagcatgtggcaaaggcaacgacgtcc 839
               |||||||  ||||||||||| || ||||||| || || || || ||||| || ||| | |
Sbjct: 3927975 tggccaccgcggtcacctacgtctcggtgctctcggcttgcgggaaagggaaggacctgc 3927916

                                                                           
Query: 840     tgctcggaatgcagctgcacaagcgcatcattgagagtggggtgctgcctgacctcaagg 899
               |||| || |||||| ||||||||||| || | ||||| |||||| ||||||| |  | ||
Sbjct: 3927915 tgctggggatgcaggtgcacaagcgcgtcctcgagagcggggtgttgcctgatcagaggg 3927856

                                                                           
Query: 900     tggagaatgcgctcgttgatatgtacgcagagtgtggccagatggaagcagcttgggatt 959
               ||||||| || || |||||||||||||| ||||| ||| | ||||| || || ||||  |
Sbjct: 3927855 tggagaacgctctggttgatatgtacgccgagtgcggcgacatggacgcggcctgggtgt 3927796

                                                                           
Query: 960     tgtttgagggcatgcaagtgaggaatatcgtgtcctggacgtcggtaatctctgggtttg 1019
               |||| |||||||||||  ||||||  || | |||||||||||||||||| |||||  |||
Sbjct: 3927795 tgttcgagggcatgcagatgaggagcatggcgtcctggacgtcggtaatttctggccttg 3927736

                                                                           
Query: 1020    taagactacgccaggttaatcgggccagagcagtgtttgatggtatgcctgagagggaca 1079
               | ||   | |||||||| |||| ||||| |   ||||||||  ||||||||| || ||||
Sbjct: 3927735 tgaggtcaggccaggttgatcgtgccagggacctgtttgatcatatgcctgaaagagaca 3927676

                                                                           
Query: 1080    cggtctcatggaccgcaatgattgatggttatgtacaaactggtcagttccgagaggcac 1139
               |  || |||||||||| ||||| ||||| ||||||||   |||   |||| | || ||| 
Sbjct: 3927675 ccatcgcatggaccgcgatgatcgatggctatgtacaggttggcaggttcagggacgcat 3927616

                                                                           
Query: 1140    tggagatgtttcgtgagatgcagtttagcaaggtgaaggcagacgagttcaccatggtca 1199
               ||||||  || ||| | |||||| || |||||||||  ||||| ||||||||||||||||
Sbjct: 3927615 tggagacattccgttacatgcagatttgcaaggtgagagcagatgagttcaccatggtca 3927556

                                                                           
Query: 1200    gcatagtcacggcgtgcgcgcagcttggtgctttagagacaggggaatgggctagaatct 1259
               |  | ||||| || || || ||||| |||||| | ||||||||||||||||| || || |
Sbjct: 3927555 gtgtggtcactgcctgtgcccagctaggtgctctggagacaggggaatgggcaaggattt 3927496

                                                                           
Query: 1260    acatgaatagacatgggatcaagatggatacttttgtcgggaatgcgctcatagacatgt 1319
               |||||   |||| ||||||||||||||||  ||||||||||||||| |||||||||||||
Sbjct: 3927495 acatgggaagacttgggatcaagatggatgtttttgtcgggaatgcactcatagacatgt 3927436

                                                                           
Query: 1320    attcaaagtgtgggagtatcaagagggcattggacgtgttcaatgagatgcacagtagag 1379
               | |||||||||||||| ||  || | |||||||| || ||||| || |||||||  ||||
Sbjct: 3927435 actcaaagtgtgggagcattgagcgcgcattggatgtattcaaagatatgcacaacagag 3927376

                                                                           
Query: 1380    ataaatttacttggaccgctgttatacttggtcttgcagtgaatggccatggtgaggagg 1439
               |||| ||||| ||||| ||  ||||||||||||| ||||||||||||| ||| |||||||
Sbjct: 3927375 ataagtttacctggactgccattatacttggtctcgcagtgaatggccgtggggaggagg 3927316

                                                                           
Query: 1440    ctatccatatgtttgacaggatgcttaggacgtttgaagctccagacgaggtgaccttca 1499
               ||||  | |||||  | || ||||| ||| | ||  || ||||||| |||||||||||| 
Sbjct: 3927315 ctattgacatgttctatagaatgctcagggctttacaaactccagatgaggtgaccttcg 3927256

                                                                           
Query: 1500    ttggcgtcctcactgcctgtactcatgctggcttggttgacgaaggacgagacttctttc 1559
               |||| || ||||||||||| ||||||||||||||||||||| |||| ||||| ||||| |
Sbjct: 3927255 ttggtgttctcactgcctgcactcatgctggcttggttgacaaaggccgagagttcttcc 3927196

                                                                           
Query: 1560    tcagcatgactgggacctacagcattgctccgaatgtgctgcattatggatgcataatcg 1619
               |||||||||| | | | || |  ||| | || | |||| ||||||| |||||| ||||||
Sbjct: 3927195 tcagcatgacagaggcatataatatttcccctactgtggtgcattacggatgcttaatcg 3927136

                                                                           
Query: 1620    acctccttggccgagctgggaaactaagagaagctttggagacaataggtaaaatgccca 1679
               |  || | ||||||||||||||| |||  ||||| ||||| |||||||  ||||||||||
Sbjct: 3927135 atgtcttaggccgagctgggaaattaaaggaagcattggatacaatagacaaaatgccca 3927076

                                                                           
Query: 1680    tgaaacccagctctgcaatttgggggaccctgctggcagcttgtagggtccatggtaact 1739
               |||| |||| |||  | |||||||| |||||||||||| | ||||||||  ||||||| |
Sbjct: 3927075 tgaagcccaactccactatttggggaaccctgctggcatcctgtagggtttatggtaatt 3927016

                                                                           
Query: 1740    cagagataggtgaattggcagcagaacgtctccttgagttggatccagagaacagcatgg 1799
               |||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||  |
Sbjct: 3927015 cagaaataggtgaattggcagcggagcgtctccttgagttggatccagataacagcacag 3926956

                                                                           
Query: 1800    cttacgtccttttgtccaatctgtatgcaaaatctaatagatggggagatgtccggtggc 1859
               | ||| || | ||||| ||  |||||||||||||||||||||||  |||||||||  || 
Sbjct: 3926955 cgtacatcttgttgtcaaacatgtatgcaaaatctaatagatggaaagatgtccgacgga 3926896

                                                                           
Query: 1860    ttaggcaggtaatgatggagaaaggaatcaagaaagagcctggctgcagtcttattgaaa 1919
               |||||||| |||| ||||||||||||||||||||||| ||||| |||||| | |||||||
Sbjct: 3926895 ttaggcagataataatggagaaaggaatcaagaaagaacctggttgcagtatgattgaaa 3926836

                                                                           
Query: 1920    tgaatggcacaattcacgaatttgtagctggcgatagatctcatccgatgagcaaagaaa 1979
               ||||||||| |||||||||||||||||| |  ||||| |||||||| ||||  |||||||
Sbjct: 3926835 tgaatggcataattcacgaatttgtagccgctgataggtctcatcctatgaataaagaaa 3926776

                                                                           
Query: 1980    tctattctaaattggacaaggtactcacggatttaaagaatgctgggtatgtacctgatg 2039
               |||| || || ||||| || || || || ||||| | ||||||||| ||||| |||||||
Sbjct: 3926775 tctactcaaagttggaaaatgtgctaactgatttgaggaatgctggatatgtgcctgatg 3926716

                                                                           
Query: 2040    taactgaggtctttgttcaagtcacagaagaggaaaaacagaaagttctgtattggcaca 2099
               ||||||||||| ||||| ||||||| ||||||||||| ||||| ||||| || |||||||
Sbjct: 3926715 taactgaggtccttgttgaagtcacggaagaggaaaagcagaaggttctttactggcaca 3926656

                                                                           
Query: 2100    gcgaaaagttggctgtcgcatttgcattactcgtatcagaatccagcatgacaataagga 2159
               | || |||||||| ||| | ||||| ||||||   |||||||| |   | |  ||||| |
Sbjct: 3926655 gtgagaagttggcagtcacttttgctttactcacttcagaatctaatgttatcataagaa 3926596

                                                                           
Query: 2160    tagtgaaaaacttgaggatgtgtttggactgccacaatgcaattaaattgatcaccaatt 2219
               | ||||||||||||||||||||||||||||||||||| ||||| ||||||||  | || |
Sbjct: 3926595 ttgtgaaaaacttgaggatgtgtttggactgccacaacgcaataaaattgatatcgaaat 3926536

                                                                          
Query: 2220    tgtatatgcgagaggttgttgtgagggacaggacacgcttccatcattttagacatgga 2278
               |||||    |||||||  |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3926535 tgtatggaagagaggtcattgtgagggataggacacgcttccatcattttagacatgga 3926477



 Score = 69.9 bits (35), Expect = 5e-08
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                           
Query: 438     gcatgctggcacgcggagccaggcctgatgcgtacacgttcccgccgttgctcaaggcga 497
               ||||||||||  |||| |||||||| || ||||||||||||||| | |||||||||||| 
Sbjct: 3928326 gcatgctggctggcggggccaggcccgacgcgtacacgttcccgtccttgctcaaggcgg 3928267

                                  
Query: 498     tggctgcggagcggggcgc 516
                ||| |||| |||||||||
Sbjct: 3928266 cggcggcggcgcggggcgc 3928248



 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                           
Query: 543     tccacgcgcatgttgttaagtttgggctggagctcaacgcccacgtggctagctcgctgg 602
               |||||||||| || |||||||| ||| |||||   ||||| |||| ||| ||||| ||| 
Sbjct: 3928215 tccacgcgcacgtggttaagttcgggatggagtcgaacgctcacgcggcgagctccctga 3928156

                                            
Query: 603     tactcatgtacgcggccaggggcgacggc 631
               |  ||||||||||||||||||| ||||||
Sbjct: 3928155 tcgtcatgtacgcggccaggggagacggc 3928127



to top

>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0013F10
          Length = 163095

 Score =  846 bits (427), Expect = 0.0
 Identities = 1231/1499 (82%)
 Strand = Plus / Minus

                                                                         
Query: 780   tggccactccggtcacctacatcacggtgctgtcagcatgtggcaaaggcaacgacgtcc 839
             |||||||  ||||||||||| || ||||||| || || || || ||||| || ||| | |
Sbjct: 49879 tggccaccgcggtcacctacgtctcggtgctctcggcttgcgggaaagggaaggacctgc 49820

                                                                         
Query: 840   tgctcggaatgcagctgcacaagcgcatcattgagagtggggtgctgcctgacctcaagg 899
             |||| || |||||| ||||||||||| || | ||||| |||||| ||||||| |  | ||
Sbjct: 49819 tgctggggatgcaggtgcacaagcgcgtcctcgagagcggggtgttgcctgatcagaggg 49760

                                                                         
Query: 900   tggagaatgcgctcgttgatatgtacgcagagtgtggccagatggaagcagcttgggatt 959
             ||||||| || || |||||||||||||| ||||| ||| | ||||| || || ||||  |
Sbjct: 49759 tggagaacgctctggttgatatgtacgccgagtgcggcgacatggacgcggcctgggtgt 49700

                                                                         
Query: 960   tgtttgagggcatgcaagtgaggaatatcgtgtcctggacgtcggtaatctctgggtttg 1019
             |||| |||||||||||  ||||||  || | |||||||||||||||||| |||||  |||
Sbjct: 49699 tgttcgagggcatgcagatgaggagcatggcgtcctggacgtcggtaatttctggccttg 49640

                                                                         
Query: 1020  taagactacgccaggttaatcgggccagagcagtgtttgatggtatgcctgagagggaca 1079
             | ||   | |||||||| |||| ||||| |   ||||||||  ||||||||| || ||||
Sbjct: 49639 tgaggtcaggccaggttgatcgtgccagggacctgtttgatcatatgcctgaaagagaca 49580

                                                                         
Query: 1080  cggtctcatggaccgcaatgattgatggttatgtacaaactggtcagttccgagaggcac 1139
             |  || |||||||||| ||||| ||||| ||||||||   |||   |||| | || ||| 
Sbjct: 49579 ccatcgcatggaccgcgatgatcgatggctatgtacaggttggcaggttcagggacgcat 49520

                                                                         
Query: 1140  tggagatgtttcgtgagatgcagtttagcaaggtgaaggcagacgagttcaccatggtca 1199
             ||||||  || ||| | |||||| || |||||||||  ||||| ||||||||||||||||
Sbjct: 49519 tggagacattccgttacatgcagatttgcaaggtgagagcagatgagttcaccatggtca 49460

                                                                         
Query: 1200  gcatagtcacggcgtgcgcgcagcttggtgctttagagacaggggaatgggctagaatct 1259
             |  | ||||| || || || ||||| |||||| | ||||||||||||||||| || || |
Sbjct: 49459 gtgtggtcactgcctgtgcccagctaggtgctctggagacaggggaatgggcaaggattt 49400

                                                                         
Query: 1260  acatgaatagacatgggatcaagatggatacttttgtcgggaatgcgctcatagacatgt 1319
             |||||   |||| ||||||||||||||||  ||||||||||||||| |||||||||||||
Sbjct: 49399 acatgggaagacttgggatcaagatggatgtttttgtcgggaatgcactcatagacatgt 49340

                                                                         
Query: 1320  attcaaagtgtgggagtatcaagagggcattggacgtgttcaatgagatgcacagtagag 1379
             | |||||||||||||| ||  || | |||||||| || ||||| || |||||||  ||||
Sbjct: 49339 actcaaagtgtgggagcattgagcgcgcattggatgtattcaaagatatgcacaacagag 49280

                                                                         
Query: 1380  ataaatttacttggaccgctgttatacttggtcttgcagtgaatggccatggtgaggagg 1439
             |||| ||||| ||||| ||  ||||||||||||| ||||||||||||| ||| |||||||
Sbjct: 49279 ataagtttacctggactgccattatacttggtctcgcagtgaatggccgtggggaggagg 49220

                                                                         
Query: 1440  ctatccatatgtttgacaggatgcttaggacgtttgaagctccagacgaggtgaccttca 1499
             ||||  | |||||  | || ||||| ||| | ||  || ||||||| |||||||||||| 
Sbjct: 49219 ctattgacatgttctatagaatgctcagggctttacaaactccagatgaggtgaccttcg 49160

                                                                         
Query: 1500  ttggcgtcctcactgcctgtactcatgctggcttggttgacgaaggacgagacttctttc 1559
             |||| || ||||||||||| ||||||||||||||||||||| |||| ||||| ||||| |
Sbjct: 49159 ttggtgttctcactgcctgcactcatgctggcttggttgacaaaggccgagagttcttcc 49100

                                                                         
Query: 1560  tcagcatgactgggacctacagcattgctccgaatgtgctgcattatggatgcataatcg 1619
             |||||||||| | | | || |  ||| | || | |||| ||||||| |||||| ||||||
Sbjct: 49099 tcagcatgacagaggcatataatatttcccctactgtggtgcattacggatgcttaatcg 49040

                                                                         
Query: 1620  acctccttggccgagctgggaaactaagagaagctttggagacaataggtaaaatgccca 1679
             |  || | ||||||||||||||| |||  ||||| ||||| |||||||  ||||||||||
Sbjct: 49039 atgtcttaggccgagctgggaaattaaaggaagcattggatacaatagacaaaatgccca 48980

                                                                         
Query: 1680  tgaaacccagctctgcaatttgggggaccctgctggcagcttgtagggtccatggtaact 1739
             |||| |||| |||  | |||||||| |||||||||||| | ||||||||  ||||||| |
Sbjct: 48979 tgaagcccaactccactatttggggaaccctgctggcatcctgtagggtttatggtaatt 48920

                                                                         
Query: 1740  cagagataggtgaattggcagcagaacgtctccttgagttggatccagagaacagcatgg 1799
             |||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||  |
Sbjct: 48919 cagaaataggtgaattggcagcggagcgtctccttgagttggatccagataacagcacag 48860

                                                                         
Query: 1800  cttacgtccttttgtccaatctgtatgcaaaatctaatagatggggagatgtccggtggc 1859
             | ||| || | ||||| ||  |||||||||||||||||||||||  |||||||||  || 
Sbjct: 48859 cgtacatcttgttgtcaaacatgtatgcaaaatctaatagatggaaagatgtccgacgga 48800

                                                                         
Query: 1860  ttaggcaggtaatgatggagaaaggaatcaagaaagagcctggctgcagtcttattgaaa 1919
             |||||||| |||| ||||||||||||||||||||||| ||||| |||||| | |||||||
Sbjct: 48799 ttaggcagataataatggagaaaggaatcaagaaagaacctggttgcagtatgattgaaa 48740

                                                                         
Query: 1920  tgaatggcacaattcacgaatttgtagctggcgatagatctcatccgatgagcaaagaaa 1979
             ||||||||| |||||||||||||||||| |  ||||| |||||||| ||||  |||||||
Sbjct: 48739 tgaatggcataattcacgaatttgtagccgctgataggtctcatcctatgaataaagaaa 48680

                                                                         
Query: 1980  tctattctaaattggacaaggtactcacggatttaaagaatgctgggtatgtacctgatg 2039
             |||| || || ||||| || || || || ||||| | ||||||||| ||||| |||||||
Sbjct: 48679 tctactcaaagttggaaaatgtgctaactgatttgaggaatgctggatatgtgcctgatg 48620

                                                                         
Query: 2040  taactgaggtctttgttcaagtcacagaagaggaaaaacagaaagttctgtattggcaca 2099
             ||||||||||| ||||| ||||||| ||||||||||| ||||| ||||| || |||||||
Sbjct: 48619 taactgaggtccttgttgaagtcacggaagaggaaaagcagaaggttctttactggcaca 48560

                                                                         
Query: 2100  gcgaaaagttggctgtcgcatttgcattactcgtatcagaatccagcatgacaataagga 2159
             | || |||||||| ||| | ||||| ||||||   |||||||| |   | |  ||||| |
Sbjct: 48559 gtgagaagttggcagtcacttttgctttactcacttcagaatctaatgttatcataagaa 48500

                                                                         
Query: 2160  tagtgaaaaacttgaggatgtgtttggactgccacaatgcaattaaattgatcaccaatt 2219
             | ||||||||||||||||||||||||||||||||||| ||||| ||||||||  | || |
Sbjct: 48499 ttgtgaaaaacttgaggatgtgtttggactgccacaacgcaataaaattgatatcgaaat 48440

                                                                        
Query: 2220  tgtatatgcgagaggttgttgtgagggacaggacacgcttccatcattttagacatgga 2278
             |||||    |||||||  |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 48439 tgtatggaagagaggtcattgtgagggataggacacgcttccatcattttagacatgga 48381



 Score = 69.9 bits (35), Expect = 5e-08
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                         
Query: 438   gcatgctggcacgcggagccaggcctgatgcgtacacgttcccgccgttgctcaaggcga 497
             ||||||||||  |||| |||||||| || ||||||||||||||| | |||||||||||| 
Sbjct: 50230 gcatgctggctggcggggccaggcccgacgcgtacacgttcccgtccttgctcaaggcgg 50171

                                
Query: 498   tggctgcggagcggggcgc 516
              ||| |||| |||||||||
Sbjct: 50170 cggcggcggcgcggggcgc 50152



 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                         
Query: 543   tccacgcgcatgttgttaagtttgggctggagctcaacgcccacgtggctagctcgctgg 602
             |||||||||| || |||||||| ||| |||||   ||||| |||| ||| ||||| ||| 
Sbjct: 50119 tccacgcgcacgtggttaagttcgggatggagtcgaacgctcacgcggcgagctccctga 50060

                                          
Query: 603   tactcatgtacgcggccaggggcgacggc 631
             |  ||||||||||||||||||| ||||||
Sbjct: 50059 tcgtcatgtacgcggccaggggagacggc 50031



to top

>gb|AC147877.10| Medicago truncatula clone mth2-9b13, complete sequence
          Length = 122251

 Score = 52.0 bits (26), Expect = 0.012
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 1307  ctcatagacatgtattcaaagtgtgg 1332
             ||||||||||||||||||||||||||
Sbjct: 54865 ctcatagacatgtattcaaagtgtgg 54840



to top

>gb|AC140849.8| Medicago truncatula clone mth2-17f20, complete sequence
          Length = 136131

 Score = 52.0 bits (26), Expect = 0.012
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 1307  ctcatagacatgtattcaaagtgtgg 1332
             ||||||||||||||||||||||||||
Sbjct: 15314 ctcatagacatgtattcaaagtgtgg 15339



to top

>emb|CR855219.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0140J09,
             complete sequence
          Length = 81683

 Score = 46.1 bits (23), Expect = 0.72
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 1307  ctcatagacatgtattcaaagtgtggg 1333
             ||||||||||||||||| |||||||||
Sbjct: 25220 ctcatagacatgtattccaagtgtggg 25194



to top

>ref|NM_001059842.1| Oryza sativa (japonica cultivar-group) Os04g0514500 (Os04g0514500)
            mRNA, complete cds
          Length = 4122

 Score = 46.1 bits (23), Expect = 0.72
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 1307 ctcatagacatgtattcaaagtgtggg 1333
            ||||||||||||||||| |||||||||
Sbjct: 2341 ctcatagacatgtattccaagtgtggg 2367



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.72
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 1307     ctcatagacatgtattcaaagtgtggg 1333
                ||||||||||||||||| |||||||||
Sbjct: 25678537 ctcatagacatgtattccaagtgtggg 25678511



to top

>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16,
             complete sequence
          Length = 130718

 Score = 46.1 bits (23), Expect = 0.72
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 1307  ctcatagacatgtattcaaagtgtggg 1333
             ||||||||||||||||| |||||||||
Sbjct: 58264 ctcatagacatgtattccaagtgtggg 58238



to top

>emb|AL929091.28| Human DNA sequence from clone XXyac-960E7 on chromosome 1, complete
             sequence
          Length = 70616

 Score = 46.1 bits (23), Expect = 0.72
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 2057  caagtcacagaagaggaaaaaca 2079
             |||||||||||||||||||||||
Sbjct: 20800 caagtcacagaagaggaaaaaca 20778



to top

>dbj|AK121876.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033104I01, full
            insert sequence
          Length = 4125

 Score = 46.1 bits (23), Expect = 0.72
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 1307 ctcatagacatgtattcaaagtgtggg 1333
            ||||||||||||||||| |||||||||
Sbjct: 2344 ctcatagacatgtattccaagtgtggg 2370



to top

>emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01,
            complete sequence
          Length = 127712

 Score = 46.1 bits (23), Expect = 0.72
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 1307 ctcatagacatgtattcaaagtgtggg 1333
            ||||||||||||||||| |||||||||
Sbjct: 1464 ctcatagacatgtattccaagtgtggg 1438



to top

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 119     ccaccgctcccgctgtcccgcagccg 144
               ||||||||||||||||| ||||||||
Sbjct: 3277377 ccaccgctcccgctgtcgcgcagccg 3277402



to top

>gb|AC144807.23| Medicago truncatula clone mth2-9j13, complete sequence
          Length = 115904

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 1087  atggaccgcaatgattgatggttatgtaca 1116
             |||||| ||||||||| |||||||||||||
Sbjct: 15756 atggactgcaatgattaatggttatgtaca 15727



to top

>gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome 5, complete sequence
          Length = 160517

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 2811  aatttgtaatgaactaaaaacattga 2836
             ||||||||||||| ||||||||||||
Sbjct: 96718 aatttgtaatgaattaaaaacattga 96693



to top

>gb|AC127292.4| Mus musculus BAC clone RP23-375J3 from chromosome 9, complete sequence
          Length = 157088

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1070   gagagggacacggtctcatgga 1091
              ||||||||||||||||||||||
Sbjct: 128308 gagagggacacggtctcatgga 128329



to top

>gb|AC123824.4| Mus musculus BAC clone RP24-84D16 from chromosome 12, complete sequence
          Length = 205607

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 737   ctgtcatgctgctctttcctgg 758
             ||||||||||||||||||||||
Sbjct: 56683 ctgtcatgctgctctttcctgg 56662



to top

>gb|AC106880.4| Homo sapiens BAC clone RP11-709E23 from 4, complete sequence
          Length = 67361

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1868 gtaatgatggagaaaggaatca 1889
            ||||||||||||||||||||||
Sbjct: 6943 gtaatgatggagaaaggaatca 6922



to top

>emb|AL353575.24| Human DNA sequence from clone RP3-433O4 on chromosome X, complete
             sequence
          Length = 70581

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 2718  tttactgttaggtgtgtagtga 2739
             ||||||||||||||||||||||
Sbjct: 48778 tttactgttaggtgtgtagtga 48799



to top

>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence
          Length = 245443

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 2811   aatttgtaatgaactaaaaacattga 2836
              ||||||||||||| ||||||||||||
Sbjct: 166298 aatttgtaatgaattaaaaacattga 166273



to top

>dbj|AP006365.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT31H17, TM0171,
              complete sequence
          Length = 126380

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 1307   ctcatagacatgtattcaaagtgtgg 1332
              |||||||| |||||||||||||||||
Sbjct: 120047 ctcatagatatgtattcaaagtgtgg 120022



to top

>gb|AC144813.3| Mus musculus BAC clone RP24-324I23 from 9, complete sequence
          Length = 146104

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1070   gagagggacacggtctcatgga 1091
              ||||||||||||||||||||||
Sbjct: 106950 gagagggacacggtctcatgga 106929



to top

>gb|AY496155.1| Capsicum annuum DREB-like protein 1 mRNA, complete cds
          Length = 1085

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 2799 agttggtagttgaatttgtaatgaactaaa 2828
            |||||||||||| |||||||||||| ||||
Sbjct: 1018 agttggtagttgtatttgtaatgaaataaa 1047


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 496,759,124
Number of extensions: 27271568
Number of successful extensions: 152687
Number of sequences better than 10.0: 23
Number of HSP's gapped: 152681
Number of HSP's successfully gapped: 41
Length of query: 2920
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 2897
Effective length of database: 18,503,978,556
Effective search space: 53606025876732
Effective search space used: 53606025876732
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
to top