| Clone Name | FLbaf35i20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT829922.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI026G07, full insert sequence Length = 597 Score = 220 bits (111), Expect = 4e-54 Identities = 156/171 (91%) Strand = Plus / Plus Query: 149 cctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccatttt 208 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 150 cctgtacagcggcgagaagaagcacgtcgtcgccggcatcgccatcttcgccgccatctt 209 Query: 209 cggggttccctggtacctcatgacccgaggggcaaagcatgactctcatcaagattatgt 268 ||| || ||||||||||||||||||||||||||||||||| | || || |||||||| | Sbjct: 210 cggcgtcccctggtacctcatgacccgaggggcaaagcatcagtcgcaccaagattacat 269 Query: 269 ggagcgagctaacaaggcgaggtcggataggctttcttctggacagccatc 319 ||| |||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 270 ggaaagagctaacaaggcgaggtcggagaggctttcttctggacaggcatc 320
>ref|NM_001073535.1| Oryza sativa (japonica cultivar-group) Os12g0556400 (Os12g0556400) mRNA, partial cds Length = 1299 Score = 220 bits (111), Expect = 4e-54 Identities = 156/171 (91%) Strand = Plus / Plus Query: 149 cctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccatttt 208 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 211 cctgtacagcggcgagaagaagcacgtcgtcgccggcatcgccatcttcgccgccatctt 270 Query: 209 cggggttccctggtacctcatgacccgaggggcaaagcatgactctcatcaagattatgt 268 ||| || ||||||||||||||||||||||||||||||||| | || || |||||||| | Sbjct: 271 cggcgtcccctggtacctcatgacccgaggggcaaagcatcagtcgcaccaagattacat 330 Query: 269 ggagcgagctaacaaggcgaggtcggataggctttcttctggacagccatc 319 ||| |||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 331 ggaaagagctaacaaggcgaggtcggagaggctttcttctggacaggcatc 381
>dbj|AK108690.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D03, full insert sequence Length = 1299 Score = 220 bits (111), Expect = 4e-54 Identities = 156/171 (91%) Strand = Plus / Plus Query: 149 cctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccatttt 208 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 211 cctgtacagcggcgagaagaagcacgtcgtcgccggcatcgccatcttcgccgccatctt 270 Query: 209 cggggttccctggtacctcatgacccgaggggcaaagcatgactctcatcaagattatgt 268 ||| || ||||||||||||||||||||||||||||||||| | || || |||||||| | Sbjct: 271 cggcgtcccctggtacctcatgacccgaggggcaaagcatcagtcgcaccaagattacat 330 Query: 269 ggagcgagctaacaaggcgaggtcggataggctttcttctggacagccatc 319 ||| |||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 331 ggaaagagctaacaaggcgaggtcggagaggctttcttctggacaggcatc 381
>dbj|AK062903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F07, full insert sequence Length = 640 Score = 220 bits (111), Expect = 4e-54 Identities = 156/171 (91%) Strand = Plus / Plus Query: 149 cctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccatttt 208 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 176 cctgtacagcggcgagaagaagcacgtcgtcgccggcatcgccatcttcgccgccatctt 235 Query: 209 cggggttccctggtacctcatgacccgaggggcaaagcatgactctcatcaagattatgt 268 ||| || ||||||||||||||||||||||||||||||||| | || || |||||||| | Sbjct: 236 cggcgtcccctggtacctcatgacccgaggggcaaagcatcagtcgcaccaagattacat 295 Query: 269 ggagcgagctaacaaggcgaggtcggataggctttcttctggacagccatc 319 ||| |||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 296 ggaaagagctaacaaggcgaggtcggagaggctttcttctggacaggcatc 346
>ref|NM_001067960.1| Oryza sativa (japonica cultivar-group) Os08g0272000 (Os08g0272000) mRNA, partial cds Length = 521 Score = 198 bits (100), Expect = 2e-47 Identities = 154/172 (89%) Strand = Plus / Plus Query: 149 cctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccatttt 208 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 57 cctgtacagcggcgagaagaagcacgtcgtcgccggcatcgccatcttcgccgccatctt 116 Query: 209 cggggttccctggtacctcatgacccgaggggcaaagcatgactctcatcaagattatgt 268 ||| |||||||||||| |||||| ||||||| |||||||| | ||||| |||||||| | Sbjct: 117 cggcgttccctggtacttcatgagccgagggacaaagcatcaatctcaccaagattacat 176 Query: 269 ggagcgagctaacaaggcgaggtcggataggctttcttctggacagccatca 320 ||| ||||||||||||||||||||| || ||||||||||||||| ||||| Sbjct: 177 ggaaaaagctaacaaggcgaggtcggagagactttcttctggacagtcatca 228
>dbj|AK111355.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G12, full insert sequence Length = 521 Score = 198 bits (100), Expect = 2e-47 Identities = 154/172 (89%) Strand = Plus / Plus Query: 149 cctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccatttt 208 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 57 cctgtacagcggcgagaagaagcacgtcgtcgccggcatcgccatcttcgccgccatctt 116 Query: 209 cggggttccctggtacctcatgacccgaggggcaaagcatgactctcatcaagattatgt 268 ||| |||||||||||| |||||| ||||||| |||||||| | ||||| |||||||| | Sbjct: 117 cggcgttccctggtacttcatgagccgagggacaaagcatcaatctcaccaagattacat 176 Query: 269 ggagcgagctaacaaggcgaggtcggataggctttcttctggacagccatca 320 ||| ||||||||||||||||||||| || ||||||||||||||| ||||| Sbjct: 177 ggaaaaagctaacaaggcgaggtcggagagactttcttctggacagtcatca 228
>gb|AY111250.1| Zea mays CL14815_1 mRNA sequence Length = 431 Score = 141 bits (71), Expect = 3e-30 Identities = 143/167 (85%) Strand = Plus / Minus Query: 153 tacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccattttcggg 212 ||||| || |||||||||||||||||||| ||||||||||||||||| ||| | ||||| Sbjct: 325 tacagtggcgagaagaagcacgtcgtcgccggcatcgccatcttcgctgccgtcttcggc 266 Query: 213 gttccctggtacctcatgacccgaggggcaaagcatgactctcatcaagattatgtggag 272 || || |||||| ||||||| ||||||||||||||| | ||||| |||||||| |||| Sbjct: 265 gtcccatggtacttcatgacgcgaggggcaaagcatcaatctcaccaagattacatggaa 206 Query: 273 cgagctaacaaggcgaggtcggataggctttcttctggacagccatc 319 |||||||||||||| || || |||||||||||||||||| |||| Sbjct: 205 aaggctaacaaggcgagatcagagaggctttcttctggacagtcatc 159
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 149 cctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccatttt 208 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 22675207 cctgtacagcggcgagaagaagcacgtcgtcgccggcatcgccatcttcgccgccatctt 22675266 Query: 209 cggggttccctggtacctcatgacccgagg 238 ||| || ||||||||||||||||||||||| Sbjct: 22675267 cggcgtcccctggtacctcatgacccgagg 22675296 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 236 aggggcaaagcatgactctcatcaagattatgtggagcgagctaacaaggcgaggtcgga 295 ||||||||||||| | || || |||||||| |||| |||||||||||||||||||||| Sbjct: 22676348 aggggcaaagcatcagtcgcaccaagattacatggaaagagctaacaaggcgaggtcgga 22676407 Query: 296 taggctttcttctggacagccatc 319 |||||||||||||||||| |||| Sbjct: 22676408 gaggctttcttctggacaggcatc 22676431
>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138368 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 149 cctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccatttt 208 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 120327 cctgtacagcggcgagaagaagcacgtcgtcgccggcatcgccatcttcgccgccatctt 120386 Query: 209 cggggttccctggtacctcatgacccgagg 238 ||| || ||||||||||||||||||||||| Sbjct: 120387 cggcgtcccctggtacctcatgacccgagg 120416 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 236 aggggcaaagcatgactctcatcaagattatgtggagcgagctaacaaggcgaggtcgga 295 ||||||||||||| | || || |||||||| |||| |||||||||||||||||||||| Sbjct: 121468 aggggcaaagcatcagtcgcaccaagattacatggaaagagctaacaaggcgaggtcgga 121527 Query: 296 taggctttcttctggacagccatc 319 |||||||||||||||||| |||| Sbjct: 121528 gaggctttcttctggacaggcatc 121551
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 131 bits (66), Expect = 3e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 149 cctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccatttt 208 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 10440417 cctgtacagcggcgagaagaagcacgtcgtcgccggcatcgccatcttcgccgccatctt 10440358 Query: 209 cggggttccctggtacctcatgacccgagg 238 ||| |||||||||||| |||||| |||||| Sbjct: 10440357 cggcgttccctggtacttcatgagccgagg 10440328 Score = 73.8 bits (37), Expect = 6e-10 Identities = 73/85 (85%) Strand = Plus / Minus Query: 236 aggggcaaagcatgactctcatcaagattatgtggagcgagctaacaaggcgaggtcgga 295 |||| |||||||| | ||||| |||||||| |||| ||||||||||||||||||||| Sbjct: 10438383 agggacaaagcatcaatctcaccaagattacatggaaaaagctaacaaggcgaggtcgga 10438324 Query: 296 taggctttcttctggacagccatca 320 || ||||||||||||||| ||||| Sbjct: 10438323 gagactttcttctggacagtcatca 10438299
>dbj|AP005731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091D16 Length = 174222 Score = 131 bits (66), Expect = 3e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 149 cctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccatttt 208 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 141375 cctgtacagcggcgagaagaagcacgtcgtcgccggcatcgccatcttcgccgccatctt 141316 Query: 209 cggggttccctggtacctcatgacccgagg 238 ||| |||||||||||| |||||| |||||| Sbjct: 141315 cggcgttccctggtacttcatgagccgagg 141286 Score = 73.8 bits (37), Expect = 6e-10 Identities = 73/85 (85%) Strand = Plus / Minus Query: 236 aggggcaaagcatgactctcatcaagattatgtggagcgagctaacaaggcgaggtcgga 295 |||| |||||||| | ||||| |||||||| |||| ||||||||||||||||||||| Sbjct: 139341 agggacaaagcatcaatctcaccaagattacatggaaaaagctaacaaggcgaggtcgga 139282 Query: 296 taggctttcttctggacagccatca 320 || ||||||||||||||| ||||| Sbjct: 139281 gagactttcttctggacagtcatca 139257
>dbj|AP005163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0053M06 Length = 175416 Score = 131 bits (66), Expect = 3e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 149 cctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccatttt 208 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 63008 cctgtacagcggcgagaagaagcacgtcgtcgccggcatcgccatcttcgccgccatctt 62949 Query: 209 cggggttccctggtacctcatgacccgagg 238 ||| |||||||||||| |||||| |||||| Sbjct: 62948 cggcgttccctggtacttcatgagccgagg 62919 Score = 73.8 bits (37), Expect = 6e-10 Identities = 73/85 (85%) Strand = Plus / Minus Query: 236 aggggcaaagcatgactctcatcaagattatgtggagcgagctaacaaggcgaggtcgga 295 |||| |||||||| | ||||| |||||||| |||| ||||||||||||||||||||| Sbjct: 60974 agggacaaagcatcaatctcaccaagattacatggaaaaagctaacaaggcgaggtcgga 60915 Query: 296 taggctttcttctggacagccatca 320 || ||||||||||||||| ||||| Sbjct: 60914 gagactttcttctggacagtcatca 60890
>emb|CT987417.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 543 Score = 73.8 bits (37), Expect = 6e-10 Identities = 103/125 (82%) Strand = Plus / Plus Query: 141 gatcacgtcctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgcc 200 ||||||| |||||||||||| || |||||||||||| | || ||||||||| || || || Sbjct: 86 gatcacgccctgtacagcggcgacaagaagcacgtcctggccggcatcgccgtcatctcc 145 Query: 201 gccattttcggggttccctggtacctcatgacccgaggggcaaagcatgactctcatcaa 260 | | ||||| |||||||||| |||||||| |||||| ||||||| | || |||||| Sbjct: 146 ctcgtcttcggtgttccctggttcctcatgaatcgagggtcaaagcaccagtcccatcaa 205 Query: 261 gatta 265 ||||| Sbjct: 206 gatta 210
>emb|CT983352.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 522 Score = 73.8 bits (37), Expect = 6e-10 Identities = 103/125 (82%) Strand = Plus / Plus Query: 141 gatcacgtcctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgcc 200 ||||||| |||||||||||| || |||||||||||| | || ||||||||| || || || Sbjct: 86 gatcacgccctgtacagcggcgacaagaagcacgtcctggccggcatcgccgtcatctcc 145 Query: 201 gccattttcggggttccctggtacctcatgacccgaggggcaaagcatgactctcatcaa 260 | | ||||| |||||||||| |||||||| |||||| ||||||| | || |||||| Sbjct: 146 ctcgtcttcggtgttccctggttcctcatgaatcgagggtcaaagcaccagtcccatcaa 205 Query: 261 gatta 265 ||||| Sbjct: 206 gatta 210
>emb|CT986659.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 479 Score = 67.9 bits (34), Expect = 4e-08 Identities = 97/118 (82%) Strand = Plus / Plus Query: 148 tcctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccattt 207 ||||||||||||| || |||||||||||| | || ||||||||| || || || | | | Sbjct: 110 tcctgtacagcggcgacaagaagcacgtcctggccggcatcgccgtcatctccctcgtct 169 Query: 208 tcggggttccctggtacctcatgacccgaggggcaaagcatgactctcatcaagatta 265 |||| |||||||||| |||||||| |||||| ||||||| | || ||||||||||| Sbjct: 170 tcggtgttccctggttcctcatgaatcgagggtcaaagcaccagtcccatcaagatta 227
>emb|CT985849.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 479 Score = 67.9 bits (34), Expect = 4e-08 Identities = 97/118 (82%) Strand = Plus / Plus Query: 148 tcctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccattt 207 ||||||||||||| || |||||||||||| | || ||||||||| || || || | | | Sbjct: 110 tcctgtacagcggcgacaagaagcacgtcctggccggcatcgccgtcatctccctcgtct 169 Query: 208 tcggggttccctggtacctcatgacccgaggggcaaagcatgactctcatcaagatta 265 |||| |||||||||| |||||||| |||||| ||||||| | || ||||||||||| Sbjct: 170 tcggtgttccctggttcctcatgaatcgagggtcaaagcaccagtcccatcaagatta 227
>emb|CT984428.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 479 Score = 67.9 bits (34), Expect = 4e-08 Identities = 97/118 (82%) Strand = Plus / Plus Query: 148 tcctgtacagcggagagaagaagcacgtcgtcgcaggcatcgccatcttcgccgccattt 207 ||||||||||||| || |||||||||||| | || ||||||||| || || || | | | Sbjct: 110 tcctgtacagcggcgacaagaagcacgtcctggccggcatcgccgtcatctccctcgtct 169 Query: 208 tcggggttccctggtacctcatgacccgaggggcaaagcatgactctcatcaagatta 265 |||| |||||||||| |||||||| |||||| ||||||| | || ||||||||||| Sbjct: 170 tcggtgttccctggttcctcatgaatcgagggtcaaagcaccagtcccatcaagatta 227
>gb|AC098973.2| Homo sapiens chromosome 3 clone RP11-286D1, complete sequence Length = 216172 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 297 aggctttcttctggacagcca 317 ||||||||||||||||||||| Sbjct: 155930 aggctttcttctggacagcca 155910
>dbj|AP000722.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-675M1, complete sequence Length = 177882 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 gaatctgaaggcttaatcttg 411 ||||||||||||||||||||| Sbjct: 139046 gaatctgaaggcttaatcttg 139066
>gb|CP000462.1| Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome Length = 4744448 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 gcgccagttcaagcggcggg 122 |||||||||||||||||||| Sbjct: 119978 gcgccagttcaagcggcggg 119959
>gb|DQ922860.1| Argynnis aglaja voucher NW76-15 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 1450 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 tttttgctattctaggagga 545 |||||||||||||||||||| Sbjct: 1085 tttttgctattctaggagga 1104
>emb|CR925711.7| Zebrafish DNA sequence from clone CH211-215G15, complete sequence Length = 200688 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 catcactgaaagaatgaaggagct 339 |||||||| ||||||||||||||| Sbjct: 111011 catcactgcaagaatgaaggagct 110988
>dbj|AB231866.1| Branchiostoma floridae gene for zinc finger protein AmphiZic, complete cds Length = 155361 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 caaatcatgatatttttgtt 577 |||||||||||||||||||| Sbjct: 15617 caaatcatgatatttttgtt 15636
>gb|AC096629.11| Bos taurus clone rp42-152a4, complete sequence Length = 191756 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ccaggatagatcacgtcctg 152 |||||||||||||||||||| Sbjct: 179476 ccaggatagatcacgtcctg 179457
>gb|AC116788.14| Mus musculus chromosome 8, clone RP24-296N13, complete sequence Length = 164158 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 471 ttattgtaatacagtaacagtaga 494 ||||||||||||| |||||||||| Sbjct: 92804 ttattgtaatacactaacagtaga 92781
>gb|AC097176.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1576_F01, complete sequence Length = 119525 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 gacaacaaatcatgatattt 572 |||||||||||||||||||| Sbjct: 19796 gacaacaaatcatgatattt 19777
>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence Length = 183990 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 tgtaatacagtaacagtaga 494 |||||||||||||||||||| Sbjct: 32068 tgtaatacagtaacagtaga 32087
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01, complete sequence Length = 126532 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 gacaacaaatcatgatattt 572 |||||||||||||||||||| Sbjct: 90524 gacaacaaatcatgatattt 90505
>gb|AC131335.11| Mus musculus chromosome 8, clone RP23-32D9, complete sequence Length = 190133 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 taacagtagaaattttgttc 504 |||||||||||||||||||| Sbjct: 44574 taacagtagaaattttgttc 44555
>ref|XM_504385.1| Yarrowia lipolytica CLIB122, YALI0E25201g predicted mRNA Length = 4068 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 gtcgtcgcaggcatcgccatcttc 197 ||||||||||||||| |||||||| Sbjct: 736 gtcgtcgcaggcatcaccatcttc 759
>gb|AC092858.21| Bos taurus clone rp42-147e22, complete sequence Length = 165590 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ccaggatagatcacgtcctg 152 |||||||||||||||||||| Sbjct: 22583 ccaggatagatcacgtcctg 22564
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 agcacgtcgtcgcaggcatc 188 |||||||||||||||||||| Sbjct: 160285 agcacgtcgtcgcaggcatc 160304
>ref|NM_001077051.1| Bos taurus hypothetical protein MGC133945 (MGC133945), mRNA gb|BC109580.1| Bos taurus hypothetical protein MGC133945, mRNA (cDNA clone MGC:133945 IMAGE:8056717), complete cds Length = 1777 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 ctgaaagaatgaaggagctg 340 |||||||||||||||||||| Sbjct: 594 ctgaaagaatgaaggagctg 613
>gb|AC182231.2| Mus musculus BAC clone RP23-356C18 from chromosome 8, complete sequence Length = 206310 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 taacagtagaaattttgttc 504 |||||||||||||||||||| Sbjct: 174215 taacagtagaaattttgttc 174196
>gb|AC068759.11| Homo sapiens 3 BAC RP11-324C10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183357 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 tcactgaaagaatgaaggag 337 |||||||||||||||||||| Sbjct: 29113 tcactgaaagaatgaaggag 29094
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 gacaacaaatcatgatattt 572 |||||||||||||||||||| Sbjct: 21971310 gacaacaaatcatgatattt 21971291
>emb|AL513044.13| Human DNA sequence from clone RP11-187D4 on chromosome 1 Contains a CpG island, complete sequence Length = 111901 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 taggaggagacgatggacaa 557 |||||||||||||||||||| Sbjct: 29628 taggaggagacgatggacaa 29609
>emb|AL445486.10| Human DNA sequence from clone RP11-139K1 on chromosome 10 Contains part of the TCF7L2 gene for transcription factor 7-like 2 (T-cell specific, HMG-box) and a ribosomal protein S15 (RPS15) pseudogene, complete sequence Length = 101839 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 tctcatagtagtcttttttg 531 |||||||||||||||||||| Sbjct: 4999 tctcatagtagtcttttttg 5018
>gb|AC092874.2| Sus scrofa clone RP44-326F1, complete sequence Length = 164404 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 ttgtaatacagtaacagtag 493 |||||||||||||||||||| Sbjct: 50228 ttgtaatacagtaacagtag 50247
>gb|DQ338750.1| Thaumantis klugius cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 1450 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 tttttgctattctaggagga 545 |||||||||||||||||||| Sbjct: 1085 tttttgctattctaggagga 1104
>dbj|AK109079.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-G11, full insert sequence Length = 1040 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 cgccatcttcgccgccattttcgg 211 ||||||||||||||||||| |||| Sbjct: 100 cgccatcttcgccgccattatcgg 123
>gb|AY621506.1| Aptostichus sp. APT2 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 810 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 tttttgctattctaggagga 545 |||||||||||||||||||| Sbjct: 768 tttttgctattctaggagga 787
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome Length = 1267782 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 tcatagtagtcttttttgct 533 |||||||||||||||||||| Sbjct: 44360 tcatagtagtcttttttgct 44379
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 gtcgtcgcaggcatcgccatcttc 197 ||||||||||||||| |||||||| Sbjct: 3019964 gtcgtcgcaggcatcaccatcttc 3019941 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 95,867,636 Number of extensions: 4917874 Number of successful extensions: 87781 Number of sequences better than 10.0: 44 Number of HSP's gapped: 87775 Number of HSP's successfully gapped: 49 Length of query: 601 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 579 Effective length of database: 18,508,616,841 Effective search space: 10716489150939 Effective search space used: 10716489150939 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)