ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf35i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK105123:Os04g0165500 130 7e-31
2Os10g0141800:Os10g0141800 29 1.7
3Os12g0147000:Os12g0147000 28 2.9
4AY332472:Os01g0206800 28 5.0
5AK109583:Os04g0534200 28 5.0
6AK100525:Os01g0206800 28 5.0
7Os09g0555800:Os09g0555800 27 6.6
8AK107178:Os05g0518200 27 8.5

>AK105123:Os04g0165500 |
          Length = 70
 Score =  130 bits (326), Expect = 7e-31
 Identities = 60/70 (85%), Positives = 66/70 (94%)
 Frame = +3

Query: 66  MSKARNAVVVTGLVIFAGSGLAFPFYFVKSKNRPIIDSTKPLPPQATFRGPYVNTGSRDI 245
           MSKARN +V TGL+ FAG+GLAFPFYFVKSKN+PIIDS+KPLPPQATFRGPYVNTGSRDI
Sbjct: 1   MSKARNVLVATGLLAFAGAGLAFPFYFVKSKNKPIIDSSKPLPPQATFRGPYVNTGSRDI 60

Query: 246 GPDPTEYPKK 275
           GPD T+YPKK
Sbjct: 61  GPDYTDYPKK 70



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>Os10g0141800:Os10g0141800 |
          Length = 388

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +2

Query: 5   LEGGAACILHLPSTKFLTQPHVQGTQRRSCHWLG-----DLCWFWPSISLLLCEIKEQAY 169
           +E GA   L +PS   LT  H+   +R     LG     DL + W ++ +   ++K   +
Sbjct: 288 IELGAVLPLEVPSVP-LTDSHL--VRRPPVRILGLVEEDDLFFIWTAVGVFAVQLKSLQF 344

Query: 170 YRFDEASATAGYFPRT 217
            +  EA  +A ++P T
Sbjct: 345 KKVFEADVSATFYPYT 360



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>Os12g0147000:Os12g0147000 |
          Length = 387

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 7   RRRRGLHPPPSLNQVFNSTTCPRHATP 87
           +RR GLHP PS    F +   P H  P
Sbjct: 271 QRRMGLHPQPSAAPAFPAPMAPLHPPP 297



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>AY332472:Os01g0206800 |
          Length = 677

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 349 PLTASLVFCMPIENKEKTRWQNIYHFLGYSVGSGPMSRDPVFTYGP 212
           P ++   F   I+   +   +N  + LGY + + P  R  VF Y P
Sbjct: 423 PKSSETCFRKQIDTLSRVNHKNFINLLGYCLENQPFMRMMVFEYAP 468



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>AK109583:Os04g0534200 |
          Length = 183

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -3

Query: 388 IIIIPLVNQHHRVPLTASLVFCMPIENKEKTRWQNIYHFLGYSVGSGPMSRDPVFTYGP 212
           I ++ L    H       L F   +    +   +N+   +GYS  S P SR  VF Y P
Sbjct: 51  IAVVSLSASVHYWTSYVELYFQKEVVEMARLSHENVAKMVGYSKESDPFSRMLVFQYPP 109



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>AK100525:Os01g0206800 |
          Length = 683

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 349 PLTASLVFCMPIENKEKTRWQNIYHFLGYSVGSGPMSRDPVFTYGP 212
           P ++   F   I+   +   +N  + LGY + + P  R  VF Y P
Sbjct: 429 PKSSETCFRKQIDTLSRVNHKNFINLLGYCLENQPFMRMMVFEYAP 474



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>Os09g0555800:Os09g0555800 |
          Length = 577

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 292 ILFSLCFQWACRKPVRQ*VEPYDAGLP 372
           +LF++    ACR+P+R+ VE    G P
Sbjct: 287 VLFNILLDGACREPLRRPVEVLTGGAP 313



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>AK107178:Os05g0518200 |
          Length = 1055

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
 Frame = +3

Query: 3    NSKEARPASSTF---PQPSF*LNHMSKARNAVVVTGLVIFAGSGLAFPFYFVKSKNRPII 173
            N  E RPA S F   P+     N   +   +  ++G  + +  GL  P  F         
Sbjct: 798  NLVEIRPARSQFAYFPRQ----NVTQRTPISSFLSGYAVQSSPGLTTPTKFT-------- 845

Query: 174  DSTKPLPPQATFRGPYVNTGSRDIGPDPTEYP 269
             S +PLPP  T    Y +  ++  G  P  YP
Sbjct: 846  -SLRPLPPSVTSSHVYSSEDAQPHGSVPPFYP 876


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 17,626,329
Number of extensions: 430523
Number of successful extensions: 1014
Number of sequences better than 10.0: 8
Number of HSP's gapped: 1014
Number of HSP's successfully gapped: 8
Length of query: 180
Length of database: 15,399,855
Length adjustment: 94
Effective length of query: 86
Effective length of database: 11,636,001
Effective search space: 1000696086
Effective search space used: 1000696086
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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