ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf32h01 |
|---|---|
| Clone Library Name | barley_pub |
>O35986:ZRAB2_RAT Zinc finger Ran-binding domain-containing protein 2 - Rattus| norvegicus (Rat) Length = 330 Score = 33.5 bits (75), Expect = 0.62 Identities = 22/62 (35%), Positives = 30/62 (48%) Frame = -1 Query: 434 RPATESSASSHERYNPRQGSESNSDRQQPLHLHGKEEHSSLQGGVSILSKVNSDGNPWPR 255 R ++ SS+ S R R S S+S Q H G EHS +G S S + G+ PR Sbjct: 212 RSSSRSSSPSSSRSRSRSRSRSSSSSQSRSH-SGSREHSRSRGSKSRSSSRSHRGSSSPR 270 Query: 254 RR 249 +R Sbjct: 271 KR 272
>Q9R020:ZRAB2_MOUSE Zinc finger Ran-binding domain-containing protein 2 - Mus musculus| (Mouse) Length = 330 Score = 33.5 bits (75), Expect = 0.62 Identities = 22/62 (35%), Positives = 30/62 (48%) Frame = -1 Query: 434 RPATESSASSHERYNPRQGSESNSDRQQPLHLHGKEEHSSLQGGVSILSKVNSDGNPWPR 255 R ++ SS+ S R R S S+S Q H G EHS +G S S + G+ PR Sbjct: 212 RSSSRSSSPSSSRSRSRSRSRSSSSSQSRSH-SGSREHSRSRGSKSRSSSRSHRGSSSPR 270 Query: 254 RR 249 +R Sbjct: 271 KR 272
>Q13164:MK07_HUMAN Mitogen-activated protein kinase 7 - Homo sapiens (Human)| Length = 815 Score = 32.3 bits (72), Expect = 1.4 Identities = 23/67 (34%), Positives = 30/67 (44%) Frame = -3 Query: 357 ATTPPSSWQRRTFIPPGRRINTVQGKL*RQPMAQKTPPRPSSSMDGDTSGCILRPGCSKR 178 A TP + + T PPG P+AQ T P+P S+ G TSG + +P C Sbjct: 591 APTPTPTPVQPTSPPPG-------------PLAQPTGPQPQSA--GSTSGPVPQPACPPP 635 Query: 177 GGLPPNT 157 G P T Sbjct: 636 GPAPHPT 642
>Q7YZH1:RNO_DROME PHD finger protein rhinoceros - Drosophila melanogaster (Fruit fly)| Length = 3241 Score = 32.0 bits (71), Expect = 1.8 Identities = 26/93 (27%), Positives = 40/93 (43%) Frame = -1 Query: 524 RRKRREDNLTTTRR*GYLSHLVLILPTRDCRPATESSASSHERYNPRQGSESNSDRQQPL 345 RRK +ED L T + L +++P + +S +SS + S SD Sbjct: 1354 RRKSKEDLLATPIKTTPLVKRRVVVPNLSSSSSGDSESSSSSSSSGSSSSSGGSDSDSES 1413 Query: 344 HLHGKEEHSSLQGGVSILSKVNSDGNPWPRRRP 246 E SS + V+ +KV SD + P+R P Sbjct: 1414 QASNSENPSSREPPVA-PAKVPSDSSLVPKRSP 1445
>Q4PB36:SET1_USTMA Histone-lysine N-methyltransferase, H3 lysine-4 specific - Ustilago| maydis (Smut fungus) Length = 1468 Score = 31.6 bits (70), Expect = 2.4 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 20/99 (20%) Frame = -1 Query: 521 RKRREDNLTTTRR*GYLSHLVLILPTRDCRPATESSASSHERYNPR-------------- 384 R RRED T R + + PTR R + S + S +RY R Sbjct: 199 RSRREDEYETKRSRDDSNGNSIYAPTRRSRSRSRSRSRSRDRYRSRDHSRERRRERSRDR 258 Query: 383 -QGSESNSDRQQP-----LHLHGKEEHSSLQGGVSILSK 285 G+ S+ D ++P H ++EHS+ G S SK Sbjct: 259 SNGTYSSRDDRRPKADRSAHTIKRDEHSTRLNGTSEDSK 297
>P78746:CHSD_ASPFU Chitin synthase D - Aspergillus fumigatus (Sartorya fumigata)| Length = 745 Score = 30.0 bits (66), Expect = 6.9 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = -1 Query: 416 SASSHERYNPRQGSESNSDRQ-QPLHLHGKEEHSSLQGGVSILSKVNSDGNPWPRRRPLG 240 S S+H +P Q +ES+S PLHL +H + ++ ++ + +GN +RP Sbjct: 667 SPSAHILPHPSQATESSSGEDIYPLHLPSPHQHEAHFAPLNASTRGSMEGNTPEVQRPRR 726 Query: 239 QVP 231 ++P Sbjct: 727 KLP 729
>O08712:TR11B_MOUSE Tumor necrosis factor receptor superfamily member 11B precursor -| Mus musculus (Mouse) Length = 401 Score = 29.6 bits (65), Expect = 9.0 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = +2 Query: 338 EDGGVVACRSCFP--ILAGDCTVHGLTLRIPSPDDSHASAVLTPD 466 E G + C C P L CTV TL +P PD S+ + T D Sbjct: 34 ETGHQLLCDKCAPGTYLKQHCTVRRKTLCVPCPDHSYTDSWHTSD 78
>Q9N1A5:STP2_GORGO Nuclear transition protein 2 - Gorilla gorilla gorilla (Lowland| gorilla) Length = 133 Score = 29.6 bits (65), Expect = 9.0 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Frame = -1 Query: 446 TRDCRPATESSASSHERYNPRQGSESNSDRQQPLHLHGKEEHSSLQGGVSILSK-----V 282 TR C+ ++S SH R S+S + + P H H S S K + Sbjct: 27 TRHCQTFSQSCRQSHRGSRSRSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPPKRHKKTM 86 Query: 281 NSDGNPWPRRRP 246 NS +P RRP Sbjct: 87 NSHHSP---RRP 95
>Q5M0W1:QUEA_STRT1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -| Streptococcus thermophilus (strain CNRZ 1066) Length = 347 Score = 29.6 bits (65), Expect = 9.0 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Frame = -1 Query: 431 PATESSASSH-----ERYNPRQGSESNSDRQQPLHLHGKEEHSSLQGGVSILSKVNSDGN 267 P T +H ++ NPR N+ R P L+G E + G V L N+ G+ Sbjct: 33 PVTREMTDTHFDHIIDQLNPRDALVMNNTRVLPARLYG--EKTDTHGHVEFLLLKNTQGD 90 Query: 266 PW 261 W Sbjct: 91 QW 92
>O07800:MMPL8_MYCTU Putative membrane protein mmpL8 - Mycobacterium tuberculosis| Length = 1089 Score = 29.6 bits (65), Expect = 9.0 Identities = 19/52 (36%), Positives = 24/52 (46%) Frame = -3 Query: 345 PSSWQRRTFIPPGRRINTVQGKL*RQPMAQKTPPRPSSSMDGDTSGCILRPG 190 PSSW+ T+ P GRR Q + R+P+ K S D D G L G Sbjct: 1036 PSSWRPATWWPLGRRRGRAQ-RTKRKPLLPKEEEEQSPPDDDDLIGLWLHDG 1086
>O35158:CDON_RAT Cell adhesion molecule-related/down-regulated by oncogenes| precursor - Rattus norvegicus (Rat) Length = 1256 Score = 29.6 bits (65), Expect = 9.0 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%) Frame = -1 Query: 431 PATESSASSHERYNPRQGSESNSDRQQPLHLHG------KEEHSSLQGGVSILS 288 P T S AS ++ +PR GSES P+ +H E+++S+ +ILS Sbjct: 528 PVTPSEASQNDERDPRDGSESGLLNLFPVKVHSGGVELPAEKNASVPDAPNILS 581 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 106,512,378 Number of extensions: 2483822 Number of successful extensions: 7270 Number of sequences better than 10.0: 11 Number of HSP's gapped: 7263 Number of HSP's successfully gapped: 11 Length of query: 204 Length of database: 100,686,439 Length adjustment: 108 Effective length of query: 96 Effective length of database: 71,062,579 Effective search space: 6822007584 Effective search space used: 6822007584 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
