ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf29i03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK072771:Os07g0564200 156 9e-39
2AK111110:Os06g0660400 33 0.20
3AK111371:Os08g0230600 31 0.76
4AK069032:Os03g0853700 30 0.99
5AK109595:Os05g0435400 29 2.2
6AK066921:Os04g0606200 29 2.9
7AK066753:Os04g0606200 29 2.9

>AK072771:Os07g0564200 |
          Length = 76
 Score =  156 bits (395), Expect = 9e-39
 Identities = 72/74 (97%), Positives = 72/74 (97%)
 Frame = +2

Query: 140 MVFFCFLVDQRRKVRSSKPAAGICSRCGGCASVADMETATRLCYLLTVHRVTWRAIICTF 319
           MVFFCFLVDQRRKVRSSKPAAGICSRCGGCASVADMETATR CYLLTVHR TWRAIICTF
Sbjct: 1   MVFFCFLVDQRRKVRSSKPAAGICSRCGGCASVADMETATRFCYLLTVHRATWRAIICTF 60

Query: 320 CGAMLKSYRHYRLY 361
           CGAMLKSYRHYRLY
Sbjct: 61  CGAMLKSYRHYRLY 74



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>AK111110:Os06g0660400 |
          Length = 68

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 167 QRRKVRSSKPAAGICSRCGGCASVADMETATRLCYL-LTVHRVTWRAIICTFCGAMLKSY 343
           +  K+   + A G C  CGG  +  D+E    LC+L L ++    R   CT C   L SY
Sbjct: 5   KEEKLLGVQKAPGSCPYCGGGVAATDVEAKWVLCFLPLCLNNK--RRFSCTACNRRLVSY 62



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>AK111371:Os08g0230600 |
          Length = 81

 Score = 30.8 bits (68), Expect = 0.76
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 167 QRRKVRSSKPAAGICSRCGGCASVADMETATRLCYL 274
           +  +  +S+ A G C RCGG     D+E++ R+  L
Sbjct: 17  EEERETASRKAPGACPRCGGAVVATDVESSRRILCL 52



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>AK069032:Os03g0853700 |
          Length = 955

 Score = 30.4 bits (67), Expect = 0.99
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
 Frame = -2

Query: 484 QMEQTKLAGTYMHAPPPSANGT------RVETAVARADQSASTTAGLVEPVV 347
           Q     L G+ M APPP    T      R+  A A    + +TTA  VEPVV
Sbjct: 135 QKNARPLPGSLMRAPPPPPPPTAEAPRQRLPGAAASPAPATNTTAAAVEPVV 186



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>AK109595:Os05g0435400 |
          Length = 112

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 182 RSSKPAAGICSRCGGCASVADMETATRLCYLLTVHRVTWR--AIICTFCGAM 331
           R  K AA  C RCGG A + + E   +L + + V R   +  A +C  CG +
Sbjct: 15  RVLKEAARRCLRCGGAADLVETEKVLKL-FFVPVKRWPGKDPAYLCRECGLL 65



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>AK066921:Os04g0606200 |
          Length = 71

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 176 KVRSSKPAAGICSRCGGCASVADMETATR-LCYLLTVHRVTWRAIICTFC 322
           +V  +  A G C RCGG     D+E+  R LC  L V   + R   C+ C
Sbjct: 15  RVVGTHKAPGACPRCGGAVVATDVESERRILCLPLCVK--SKRKYSCSRC 62



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>AK066753:Os04g0606200 |
          Length = 71

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 176 KVRSSKPAAGICSRCGGCASVADMETATR-LCYLLTVHRVTWRAIICTFC 322
           +V  +  A G C RCGG     D+E+  R LC  L V   + R   C+ C
Sbjct: 15  RVVGTHKAPGACPRCGGAVVATDVESERRILCLPLCVK--SKRKYSCSRC 62


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 15,592,720
Number of extensions: 340075
Number of successful extensions: 1138
Number of sequences better than 10.0: 7
Number of HSP's gapped: 1136
Number of HSP's successfully gapped: 7
Length of query: 207
Length of database: 15,399,855
Length adjustment: 96
Effective length of query: 111
Effective length of database: 11,555,919
Effective search space: 1282707009
Effective search space used: 1282707009
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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