ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf29i03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P17627:PHL_LEPIN Sphingomyelinase C precursor - Leptospira inter... 30 5.5
2Q9BZZ2:SN_HUMAN Sialoadhesin precursor - Homo sapiens (Human) 30 9.3
3Q9LHS9:RBE_ARATH Probable transcriptional regulator RABBIT EARS ... 30 9.3

>P17627:PHL_LEPIN Sphingomyelinase C precursor - Leptospira interrogans|
          Length = 556
 Score = 30.4 bits (67), Expect = 5.5
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +2

Query: 101 YFWRAWRGRRSGGMVFFCFLVDQRRKVRSSKPAAGICSRCGGCASVADMETATRLCYLLT 280
           YFW  W G   G   ++    D   +++      G C + G   +  D +T +R  Y LT
Sbjct: 455 YFWNWWLGGGKGNYAYYPKFNDGSNRIQIINLDGG-CLQDGSRVAFKDYDTISRRQYFLT 513

Query: 281 V 283
           V
Sbjct: 514 V 514



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>Q9BZZ2:SN_HUMAN Sialoadhesin precursor - Homo sapiens (Human)|
          Length = 1709

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 158 LVDQRRKVRSSKPAAGICSRCGGCA 232
           L+ + R V +S P+ G CS CGGC+
Sbjct: 636 LLHKDRVVATSLPSGGGCSTCGGCS 660



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>Q9LHS9:RBE_ARATH Probable transcriptional regulator RABBIT EARS - Arabidopsis|
           thaliana (Mouse-ear cress)
          Length = 226

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 435 GGGACMYVPASFVCSIC 485
           GGG CM+ P S+ CS C
Sbjct: 44  GGGGCMWPPRSYSCSFC 60


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 85,801,869
Number of extensions: 1679952
Number of successful extensions: 4220
Number of sequences better than 10.0: 3
Number of HSP's gapped: 4218
Number of HSP's successfully gapped: 3
Length of query: 207
Length of database: 100,686,439
Length adjustment: 108
Effective length of query: 99
Effective length of database: 71,062,579
Effective search space: 7035195321
Effective search space used: 7035195321
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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