| Clone Name | FLbaf26k21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001057896.1| Oryza sativa (japonica cultivar-group) Os03g0762500 (Os03g0762500) mRNA, complete cds Length = 832 Score = 151 bits (76), Expect = 5e-33 Identities = 165/192 (85%), Gaps = 2/192 (1%) Strand = Plus / Plus Query: 152 atgtgcatggaccgatcaccggtgccggccaagaagatctggcttgccatcgcctcccgc 211 ||||||||||||||| | | ||||||| |||| | | ||||| | | ||||| | ||| Sbjct: 125 atgtgcatggaccgagctgccgtgccggtgaagagggtgtggctcggcctcgccgcgcgc 184 Query: 212 ctcggcctccggccaac-agctgggctgaggaagctgaggaaggaggtgaggacgtgcga 270 ||||||||||||| ||| ||| |||||| ||||||||| ||||||||||||||||||||| Sbjct: 185 ctcggcctccggcgaaccagc-gggctggggaagctgaagaaggaggtgaggacgtgcga 243 Query: 271 gtaccgcgacgtgcacatcatgtgggagatgctgagggagatggactccccggtgcccct 330 ||||| ||||||||||||||||||||||||||||||| ||| |||| | ||||||||| | Sbjct: 244 gtaccacgacgtgcacatcatgtgggagatgctgaggaagacggacgcgccggtgcccat 303 Query: 331 cgaggagaagga 342 | ||||||||| Sbjct: 304 ggcggagaagga 315 Score = 63.9 bits (32), Expect = 8e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 391 gaaggcggcgtggagccgcttcgtctactactgctgcgcgttct 434 ||||||||||||||| || ||| ||||||||||||||||||||| Sbjct: 364 gaaggcggcgtggagacggttcctctactactgctgcgcgttct 407
>dbj|AK103002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116G06, full insert sequence Length = 834 Score = 151 bits (76), Expect = 5e-33 Identities = 165/192 (85%), Gaps = 2/192 (1%) Strand = Plus / Plus Query: 152 atgtgcatggaccgatcaccggtgccggccaagaagatctggcttgccatcgcctcccgc 211 ||||||||||||||| | | ||||||| |||| | | ||||| | | ||||| | ||| Sbjct: 127 atgtgcatggaccgagctgccgtgccggtgaagagggtgtggctcggcctcgccgcgcgc 186 Query: 212 ctcggcctccggccaac-agctgggctgaggaagctgaggaaggaggtgaggacgtgcga 270 ||||||||||||| ||| ||| |||||| ||||||||| ||||||||||||||||||||| Sbjct: 187 ctcggcctccggcgaaccagc-gggctggggaagctgaagaaggaggtgaggacgtgcga 245 Query: 271 gtaccgcgacgtgcacatcatgtgggagatgctgagggagatggactccccggtgcccct 330 ||||| ||||||||||||||||||||||||||||||| ||| |||| | ||||||||| | Sbjct: 246 gtaccacgacgtgcacatcatgtgggagatgctgaggaagacggacgcgccggtgcccat 305 Query: 331 cgaggagaagga 342 | ||||||||| Sbjct: 306 ggcggagaagga 317 Score = 63.9 bits (32), Expect = 8e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 391 gaaggcggcgtggagccgcttcgtctactactgctgcgcgttct 434 ||||||||||||||| || ||| ||||||||||||||||||||| Sbjct: 366 gaaggcggcgtggagacggttcctctactactgctgcgcgttct 409
>gb|AC090713.6| Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence Length = 146022 Score = 139 bits (70), Expect = 2e-29 Identities = 100/110 (90%) Strand = Plus / Plus Query: 233 gggctgaggaagctgaggaaggaggtgaggacgtgcgagtaccgcgacgtgcacatcatg 292 |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 41454 gggctggggaagctgaagaaggaggtgaggacgtgcgagtaccacgacgtgcacatcatg 41513 Query: 293 tgggagatgctgagggagatggactccccggtgcccctcgaggagaagga 342 ||||||||||||||| ||| |||| | ||||||||| | | ||||||||| Sbjct: 41514 tgggagatgctgaggaagacggacgcgccggtgcccatggcggagaagga 41563 Score = 63.9 bits (32), Expect = 8e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 391 gaaggcggcgtggagccgcttcgtctactactgctgcgcgttct 434 ||||||||||||||| || ||| ||||||||||||||||||||| Sbjct: 41612 gaaggcggcgtggagacggttcctctactactgctgcgcgttct 41655
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 139 bits (70), Expect = 2e-29 Identities = 100/110 (90%) Strand = Plus / Plus Query: 233 gggctgaggaagctgaggaaggaggtgaggacgtgcgagtaccgcgacgtgcacatcatg 292 |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 31324729 gggctggggaagctgaagaaggaggtgaggacgtgcgagtaccacgacgtgcacatcatg 31324788 Query: 293 tgggagatgctgagggagatggactccccggtgcccctcgaggagaagga 342 ||||||||||||||| ||| |||| | ||||||||| | | ||||||||| Sbjct: 31324789 tgggagatgctgaggaagacggacgcgccggtgcccatggcggagaagga 31324838 Score = 67.9 bits (34), Expect = 5e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 233 gggctgaggaagctgaggaaggaggtgaggacgtgcgagtaccgcgacgtgcacatcatg 292 |||||| ||| ||||||| |||||||||| |||||||||||| ||||||| | | ||| Sbjct: 5549949 gggctgtggaggctgaggcaggaggtgagcacgtgcgagtacgaggacgtgcgcgtgatg 5549890 Query: 293 tgggagatgctgag 306 |||||||||||||| Sbjct: 5549889 tgggagatgctgag 5549876 Score = 63.9 bits (32), Expect = 8e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 391 gaaggcggcgtggagccgcttcgtctactactgctgcgcgttct 434 ||||||||||||||| || ||| ||||||||||||||||||||| Sbjct: 31324887 gaaggcggcgtggagacggttcctctactactgctgcgcgttct 31324930
>ref|NM_001065292.1| Oryza sativa (japonica cultivar-group) Os07g0115500 (Os07g0115500) mRNA, complete cds Length = 681 Score = 105 bits (53), Expect = 2e-19 Identities = 86/97 (88%) Strand = Plus / Plus Query: 207 cccgcctcggcctccggccaacagctgggctgaggaagctgaggaaggaggtgaggacgt 266 |||||||||||||||||| ||| | || ||| |||||||| |||| |||||| |||||| Sbjct: 146 cccgcctcggcctccggcgaaccaccggcctggggaagctgcggaatgaggtgcggacgt 205 Query: 267 gcgagtaccgcgacgtgcacatcatgtgggagatgct 303 |||||||| ||||||||||| |||||||||||||||| Sbjct: 206 gcgagtacagcgacgtgcacgtcatgtgggagatgct 242
>dbj|AK108206.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-D05, full insert sequence Length = 678 Score = 105 bits (53), Expect = 2e-19 Identities = 86/97 (88%) Strand = Plus / Plus Query: 207 cccgcctcggcctccggccaacagctgggctgaggaagctgaggaaggaggtgaggacgt 266 |||||||||||||||||| ||| | || ||| |||||||| |||| |||||| |||||| Sbjct: 146 cccgcctcggcctccggcgaaccaccggcctggggaagctgcggaatgaggtgcggacgt 205 Query: 267 gcgagtaccgcgacgtgcacatcatgtgggagatgct 303 |||||||| ||||||||||| |||||||||||||||| Sbjct: 206 gcgagtacagcgacgtgcacgtcatgtgggagatgct 242
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 87.7 bits (44), Expect = 6e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 240 ggaagctgaggaaggaggtgaggacgtgcgagtaccgcgacgtgcacatcatgtgggaga 299 |||||||| |||| |||||| |||||||||||||| ||||||||||| |||||||||||| Sbjct: 848259 ggaagctgcggaatgaggtgcggacgtgcgagtacagcgacgtgcacgtcatgtgggaga 848318 Query: 300 tgct 303 |||| Sbjct: 848319 tgct 848322 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 atcgcctcccgcctcggcctc 220 ||||||||||||||||||||| Sbjct: 25993897 atcgcctcccgcctcggcctc 25993877
>dbj|AP005486.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1138_B05 Length = 113982 Score = 87.7 bits (44), Expect = 6e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 240 ggaagctgaggaaggaggtgaggacgtgcgagtaccgcgacgtgcacatcatgtgggaga 299 |||||||| |||| |||||| |||||||||||||| ||||||||||| |||||||||||| Sbjct: 47015 ggaagctgcggaatgaggtgcggacgtgcgagtacagcgacgtgcacgtcatgtgggaga 47074 Query: 300 tgct 303 |||| Sbjct: 47075 tgct 47078
>gb|DQ245921.1| Zea mays clone 22675 mRNA sequence Length = 731 Score = 67.9 bits (34), Expect = 5e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 233 gggctgaggaagctgaggaaggaggtgaggacgtgcgagtaccgcgacgtgcacatcatg 292 |||||| ||| |||| || |||||||||| |||||||||||| ||||||||| | ||| Sbjct: 238 gggctgtggaggctgcggcaggaggtgagcacgtgcgagtacgaggacgtgcacgtgatg 297 Query: 293 tgggagatgctgag 306 |||||||||||||| Sbjct: 298 tgggagatgctgag 311
>emb|CT829765.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI016I18, full insert sequence Length = 559 Score = 67.9 bits (34), Expect = 5e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 233 gggctgaggaagctgaggaaggaggtgaggacgtgcgagtaccgcgacgtgcacatcatg 292 |||||| ||| ||||||| |||||||||| |||||||||||| ||||||| | | ||| Sbjct: 158 gggctgtggaggctgaggcaggaggtgagcacgtgcgagtacgaggacgtgcgcgtgatg 217 Query: 293 tgggagatgctgag 306 |||||||||||||| Sbjct: 218 tgggagatgctgag 231
>ref|NM_001055854.1| Oryza sativa (japonica cultivar-group) Os03g0206400 (Os03g0206400) mRNA, complete cds Length = 550 Score = 67.9 bits (34), Expect = 5e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 233 gggctgaggaagctgaggaaggaggtgaggacgtgcgagtaccgcgacgtgcacatcatg 292 |||||| ||| ||||||| |||||||||| |||||||||||| ||||||| | | ||| Sbjct: 156 gggctgtggaggctgaggcaggaggtgagcacgtgcgagtacgaggacgtgcgcgtgatg 215 Query: 293 tgggagatgctgag 306 |||||||||||||| Sbjct: 216 tgggagatgctgag 229
>gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence Length = 153126 Score = 67.9 bits (34), Expect = 5e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 233 gggctgaggaagctgaggaaggaggtgaggacgtgcgagtaccgcgacgtgcacatcatg 292 |||||| ||| ||||||| |||||||||| |||||||||||| ||||||| | | ||| Sbjct: 94266 gggctgtggaggctgaggcaggaggtgagcacgtgcgagtacgaggacgtgcgcgtgatg 94207 Query: 293 tgggagatgctgag 306 |||||||||||||| Sbjct: 94206 tgggagatgctgag 94193
>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0014O06, complete sequence Length = 168031 Score = 67.9 bits (34), Expect = 5e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 233 gggctgaggaagctgaggaaggaggtgaggacgtgcgagtaccgcgacgtgcacatcatg 292 |||||| ||| ||||||| |||||||||| |||||||||||| ||||||| | | ||| Sbjct: 14433 gggctgtggaggctgaggcaggaggtgagcacgtgcgagtacgaggacgtgcgcgtgatg 14374 Query: 293 tgggagatgctgag 306 |||||||||||||| Sbjct: 14373 tgggagatgctgag 14360
>dbj|AK107011.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-F03, full insert sequence Length = 656 Score = 67.9 bits (34), Expect = 5e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 233 gggctgaggaagctgaggaaggaggtgaggacgtgcgagtaccgcgacgtgcacatcatg 292 |||||| ||| ||||||| |||||||||| |||||||||||| ||||||| | | ||| Sbjct: 261 gggctgtggaggctgaggcaggaggtgagcacgtgcgagtacgaggacgtgcgcgtgatg 320 Query: 293 tgggagatgctgag 306 |||||||||||||| Sbjct: 321 tgggagatgctgag 334
>dbj|AK066494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072H16, full insert sequence Length = 552 Score = 67.9 bits (34), Expect = 5e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 233 gggctgaggaagctgaggaaggaggtgaggacgtgcgagtaccgcgacgtgcacatcatg 292 |||||| ||| ||||||| |||||||||| |||||||||||| ||||||| | | ||| Sbjct: 158 gggctgtggaggctgaggcaggaggtgagcacgtgcgagtacgaggacgtgcgcgtgatg 217 Query: 293 tgggagatgctgag 306 |||||||||||||| Sbjct: 218 tgggagatgctgag 231
>gb|AC164300.3| Mus musculus BAC clone RP23-310J6 from chromosome 8, complete sequence Length = 200605 Score = 44.1 bits (22), Expect = 0.79 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 agctgaggaaggaggtgaggac 264 |||||||||||||||||||||| Sbjct: 57730 agctgaggaaggaggtgaggac 57751
>gb|AC007616.5| Homo sapiens chromosome 16 clone RP11-547D14, complete sequence Length = 132492 Score = 44.1 bits (22), Expect = 0.79 Identities = 22/22 (100%) Strand = Plus / Minus Query: 236 ctgaggaagctgaggaaggagg 257 |||||||||||||||||||||| Sbjct: 7437 ctgaggaagctgaggaaggagg 7416
>gb|AC132623.4| Mus musculus BAC clone RP23-123N23 from chromosome 12, complete sequence Length = 195885 Score = 44.1 bits (22), Expect = 0.79 Identities = 22/22 (100%) Strand = Plus / Minus Query: 231 ctgggctgaggaagctgaggaa 252 |||||||||||||||||||||| Sbjct: 132215 ctgggctgaggaagctgaggaa 132194
>gb|AC099489.2| Homo sapiens chromosome 16 clone CTD-3088G3, complete sequence Length = 204493 Score = 44.1 bits (22), Expect = 0.79 Identities = 22/22 (100%) Strand = Plus / Plus Query: 236 ctgaggaagctgaggaaggagg 257 |||||||||||||||||||||| Sbjct: 26783 ctgaggaagctgaggaaggagg 26804
>gb|AC132449.4| Mus musculus BAC clone RP23-183J18 from 8, complete sequence Length = 206312 Score = 44.1 bits (22), Expect = 0.79 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 agctgaggaaggaggtgaggac 264 |||||||||||||||||||||| Sbjct: 72085 agctgaggaaggaggtgaggac 72064
>emb|AL845441.7| Mouse DNA sequence from clone RP23-327I5 on chromosome 2, complete sequence Length = 153307 Score = 44.1 bits (22), Expect = 0.79 Identities = 22/22 (100%) Strand = Plus / Plus Query: 77 aggagagaaagggaagggagtg 98 |||||||||||||||||||||| Sbjct: 115190 aggagagaaagggaagggagtg 115211
>gb|DQ888719.1| Petunia x hybrida P-type ATPase (PH5) gene, complete cds Length = 8524 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 gaagggagtgatattttcagagatttccg 117 |||||||||||| |||||||| ||||||| Sbjct: 5581 gaagggagtgatgttttcagatatttccg 5609
>ref|NM_001066886.1| Oryza sativa (japonica cultivar-group) Os07g0628600 (Os07g0628600) mRNA, complete cds Length = 888 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 atcgcctcccgcctcggcctc 220 ||||||||||||||||||||| Sbjct: 16 atcgcctcccgcctcggcctc 36
>emb|CR854826.15| Zebrafish DNA sequence from clone DKEY-120E17 in linkage group 2, complete sequence Length = 179978 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 gggctgaggaagctgaggaag 253 ||||||||||||||||||||| Sbjct: 126158 gggctgaggaagctgaggaag 126178
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 gatattttcagagatttccga 118 ||||||||||||||||||||| Sbjct: 96497 gatattttcagagatttccga 96517
>gb|BT016736.1| Zea mays clone Contig569 mRNA sequence Length = 1092 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 caccggtgccggccaagaaga 188 ||||||||||||||||||||| Sbjct: 93 caccggtgccggccaagaaga 113
>gb|AC116575.4| Mus musculus BAC clone RP23-263I24 from 9, complete sequence Length = 208678 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgaggaagctgaggaaggagg 257 ||||||||||||||||||||| Sbjct: 73907 tgaggaagctgaggaaggagg 73927
>gb|AC079456.28| Homo sapiens 12 BAC RP11-206B11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177640 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 gaggagagaaagggaagggag 96 ||||||||||||||||||||| Sbjct: 29382 gaggagagaaagggaagggag 29362
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 Score = 42.1 bits (21), Expect = 3.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 711 gcaagcagaaaagtaaggacctgctggtcctggctgtacca 751 ||||| |||||||| ||||||||||| ||||| ||||||| Sbjct: 10013 gcaagaagaaaagtgaggacctgctgatcctgcgtgtacca 9973
>gb|AF319168.1|AF319168 Brassica napus putative chloroplast-targeted beta-amylase (bmy) mRNA, complete cds Length = 1980 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 gaggagagaaagggaagggag 96 ||||||||||||||||||||| Sbjct: 367 gaggagagaaagggaagggag 387
>emb|AL158194.16| Human DNA sequence from clone RP11-429E17 on chromosome 13q13.1-14.2 Contains part of the LHFP gene for lipoma HMGIC fusion partner, complete sequence Length = 177019 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 772 gagtagatgtggggcttgtttggtt 796 |||||||||||||| |||||||||| Sbjct: 63519 gagtagatgtggggtttgtttggtt 63495
>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0011H09 Length = 147992 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 atcgcctcccgcctcggcctc 220 ||||||||||||||||||||| Sbjct: 27459 atcgcctcccgcctcggcctc 27439
>dbj|AP004306.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0506F02 Length = 151612 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 atcgcctcccgcctcggcctc 220 ||||||||||||||||||||| Sbjct: 70909 atcgcctcccgcctcggcctc 70889
>emb|Z95496.1|HVMLOH1 H.vulgare Mlo-h1 gene Length = 5751 Score = 42.1 bits (21), Expect = 3.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 711 gcaagcagaaaagtaaggacctgctggtcctggctgtacca 751 ||||| |||||||| ||||||||||| ||||| ||||||| Sbjct: 1337 gcaagaagaaaagtgaggacctgctgatcctgcgtgtacca 1377 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 131,170,985 Number of extensions: 7472682 Number of successful extensions: 289001 Number of sequences better than 10.0: 34 Number of HSP's gapped: 288997 Number of HSP's successfully gapped: 40 Length of query: 826 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 804 Effective length of database: 18,508,616,841 Effective search space: 14880927940164 Effective search space used: 14880927940164 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)