ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf26k08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001051625.1| Oryza sativa (japonica cultivar-group) Os01g0897700 (Os01g0897700) mRNA, partial cds Length = 1054 Score = 396 bits (200), Expect = e-107 Identities = 344/392 (87%) Strand = Plus / Plus Query: 13 ggaggaatagagaagatcaccgaggtgttgaggttgaatgaagagctgaacacgagggac 72 |||||||||||||||||||| ||||||||| ||||||||||||| | || | ||||| Sbjct: 306 ggaggaatagagaagatcactgaggtgttgcggttgaatgaagaagtcaagtccagggaa 365 Query: 73 gacgcatggaggttccatgacacgatgcagaagttcttgaagaaggccgatgacgagatc 132 || ||||||||||||||||| | ||||||||||||||||||| ||| |||||||| ||| Sbjct: 366 gatgcatggaggttccatgattcaatgcagaagttcttgaagagggctgatgacgacatc 425 Query: 133 ctcagggttcaagctcaggagagcgttgcgctgtccctcgtgaaggaaatcaccgagtac 192 |||||||||| |||||||||||||||||||| || || |||||||| |||||||||||| Sbjct: 426 atcagggttcaggctcaggagagcgttgcgctatcacttgtgaaggagatcaccgagtac 485 Query: 193 ttccacggcgactcggcgaaagaggaggcccatcctttcaggatcttcatggtcgtcagg 252 ||||| || ||||| ||||||||||| || || |||||||||||||||||||| |||||| Sbjct: 486 ttccatggtgactctgcgaaagaggaagctcaccctttcaggatcttcatggtggtcagg 545 Query: 253 gatttcctctcggttctcactgaggtgtgcagggaggtcggcaggatcaatgaccgcacg 312 ||||||||||| ||||| | | || |||| ||| || ||||||||||||||||||||| Sbjct: 546 gatttcctctcagttcttgatcaagtctgcaaggaagttggcaggatcaatgaccgcacg 605 Query: 313 atcgccagctccgtgcgccatttccccgtgcccgtcaacccgatgatgccgcagttgttc 372 ||||| ||||| |||||||||||||| || ||||||||||| |||||||| ||||||||| Sbjct: 606 atcgctagctcggtgcgccatttcccagtacccgtcaacccaatgatgccacagttgttc 665 Query: 373 ccgaggattcacgcgttgagagctggaatctc 404 || |||||||| || ||||||||||||||||| Sbjct: 666 cccaggattcatgctttgagagctggaatctc 697
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 396 bits (200), Expect = e-107 Identities = 344/392 (87%) Strand = Plus / Minus Query: 13 ggaggaatagagaagatcaccgaggtgttgaggttgaatgaagagctgaacacgagggac 72 |||||||||||||||||||| ||||||||| ||||||||||||| | || | ||||| Sbjct: 39007833 ggaggaatagagaagatcactgaggtgttgcggttgaatgaagaagtcaagtccagggaa 39007774 Query: 73 gacgcatggaggttccatgacacgatgcagaagttcttgaagaaggccgatgacgagatc 132 || ||||||||||||||||| | ||||||||||||||||||| ||| |||||||| ||| Sbjct: 39007773 gatgcatggaggttccatgattcaatgcagaagttcttgaagagggctgatgacgacatc 39007714 Query: 133 ctcagggttcaagctcaggagagcgttgcgctgtccctcgtgaaggaaatcaccgagtac 192 |||||||||| |||||||||||||||||||| || || |||||||| |||||||||||| Sbjct: 39007713 atcagggttcaggctcaggagagcgttgcgctatcacttgtgaaggagatcaccgagtac 39007654 Query: 193 ttccacggcgactcggcgaaagaggaggcccatcctttcaggatcttcatggtcgtcagg 252 ||||| || ||||| ||||||||||| || || |||||||||||||||||||| |||||| Sbjct: 39007653 ttccatggtgactctgcgaaagaggaagctcaccctttcaggatcttcatggtggtcagg 39007594 Query: 253 gatttcctctcggttctcactgaggtgtgcagggaggtcggcaggatcaatgaccgcacg 312 ||||||||||| ||||| | | || |||| ||| || ||||||||||||||||||||| Sbjct: 39007593 gatttcctctcagttcttgatcaagtctgcaaggaagttggcaggatcaatgaccgcacg 39007534 Query: 313 atcgccagctccgtgcgccatttccccgtgcccgtcaacccgatgatgccgcagttgttc 372 ||||| ||||| |||||||||||||| || ||||||||||| |||||||| ||||||||| Sbjct: 39007533 atcgctagctcggtgcgccatttcccagtacccgtcaacccaatgatgccacagttgttc 39007474 Query: 373 ccgaggattcacgcgttgagagctggaatctc 404 || |||||||| || ||||||||||||||||| Sbjct: 39007473 cccaggattcatgctttgagagctggaatctc 39007442
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 396 bits (200), Expect = e-107 Identities = 344/392 (87%) Strand = Plus / Minus Query: 13 ggaggaatagagaagatcaccgaggtgttgaggttgaatgaagagctgaacacgagggac 72 |||||||||||||||||||| ||||||||| ||||||||||||| | || | ||||| Sbjct: 81466 ggaggaatagagaagatcactgaggtgttgcggttgaatgaagaagtcaagtccagggaa 81407 Query: 73 gacgcatggaggttccatgacacgatgcagaagttcttgaagaaggccgatgacgagatc 132 || ||||||||||||||||| | ||||||||||||||||||| ||| |||||||| ||| Sbjct: 81406 gatgcatggaggttccatgattcaatgcagaagttcttgaagagggctgatgacgacatc 81347 Query: 133 ctcagggttcaagctcaggagagcgttgcgctgtccctcgtgaaggaaatcaccgagtac 192 |||||||||| |||||||||||||||||||| || || |||||||| |||||||||||| Sbjct: 81346 atcagggttcaggctcaggagagcgttgcgctatcacttgtgaaggagatcaccgagtac 81287 Query: 193 ttccacggcgactcggcgaaagaggaggcccatcctttcaggatcttcatggtcgtcagg 252 ||||| || ||||| ||||||||||| || || |||||||||||||||||||| |||||| Sbjct: 81286 ttccatggtgactctgcgaaagaggaagctcaccctttcaggatcttcatggtggtcagg 81227 Query: 253 gatttcctctcggttctcactgaggtgtgcagggaggtcggcaggatcaatgaccgcacg 312 ||||||||||| ||||| | | || |||| ||| || ||||||||||||||||||||| Sbjct: 81226 gatttcctctcagttcttgatcaagtctgcaaggaagttggcaggatcaatgaccgcacg 81167 Query: 313 atcgccagctccgtgcgccatttccccgtgcccgtcaacccgatgatgccgcagttgttc 372 ||||| ||||| |||||||||||||| || ||||||||||| |||||||| ||||||||| Sbjct: 81166 atcgctagctcggtgcgccatttcccagtacccgtcaacccaatgatgccacagttgttc 81107 Query: 373 ccgaggattcacgcgttgagagctggaatctc 404 || |||||||| || ||||||||||||||||| Sbjct: 81106 cccaggattcatgctttgagagctggaatctc 81075
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 396 bits (200), Expect = e-107 Identities = 344/392 (87%) Strand = Plus / Minus Query: 13 ggaggaatagagaagatcaccgaggtgttgaggttgaatgaagagctgaacacgagggac 72 |||||||||||||||||||| ||||||||| ||||||||||||| | || | ||||| Sbjct: 25813 ggaggaatagagaagatcactgaggtgttgcggttgaatgaagaagtcaagtccagggaa 25754 Query: 73 gacgcatggaggttccatgacacgatgcagaagttcttgaagaaggccgatgacgagatc 132 || ||||||||||||||||| | ||||||||||||||||||| ||| |||||||| ||| Sbjct: 25753 gatgcatggaggttccatgattcaatgcagaagttcttgaagagggctgatgacgacatc 25694 Query: 133 ctcagggttcaagctcaggagagcgttgcgctgtccctcgtgaaggaaatcaccgagtac 192 |||||||||| |||||||||||||||||||| || || |||||||| |||||||||||| Sbjct: 25693 atcagggttcaggctcaggagagcgttgcgctatcacttgtgaaggagatcaccgagtac 25634 Query: 193 ttccacggcgactcggcgaaagaggaggcccatcctttcaggatcttcatggtcgtcagg 252 ||||| || ||||| ||||||||||| || || |||||||||||||||||||| |||||| Sbjct: 25633 ttccatggtgactctgcgaaagaggaagctcaccctttcaggatcttcatggtggtcagg 25574 Query: 253 gatttcctctcggttctcactgaggtgtgcagggaggtcggcaggatcaatgaccgcacg 312 ||||||||||| ||||| | | || |||| ||| || ||||||||||||||||||||| Sbjct: 25573 gatttcctctcagttcttgatcaagtctgcaaggaagttggcaggatcaatgaccgcacg 25514 Query: 313 atcgccagctccgtgcgccatttccccgtgcccgtcaacccgatgatgccgcagttgttc 372 ||||| ||||| |||||||||||||| || ||||||||||| |||||||| ||||||||| Sbjct: 25513 atcgctagctcggtgcgccatttcccagtacccgtcaacccaatgatgccacagttgttc 25454 Query: 373 ccgaggattcacgcgttgagagctggaatctc 404 || |||||||| || ||||||||||||||||| Sbjct: 25453 cccaggattcatgctttgagagctggaatctc 25422
>dbj|AK061290.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A05, full insert sequence Length = 1054 Score = 396 bits (200), Expect = e-107 Identities = 344/392 (87%) Strand = Plus / Plus Query: 13 ggaggaatagagaagatcaccgaggtgttgaggttgaatgaagagctgaacacgagggac 72 |||||||||||||||||||| ||||||||| ||||||||||||| | || | ||||| Sbjct: 306 ggaggaatagagaagatcactgaggtgttgcggttgaatgaagaagtcaagtccagggaa 365 Query: 73 gacgcatggaggttccatgacacgatgcagaagttcttgaagaaggccgatgacgagatc 132 || ||||||||||||||||| | ||||||||||||||||||| ||| |||||||| ||| Sbjct: 366 gatgcatggaggttccatgattcaatgcagaagttcttgaagagggctgatgacgacatc 425 Query: 133 ctcagggttcaagctcaggagagcgttgcgctgtccctcgtgaaggaaatcaccgagtac 192 |||||||||| |||||||||||||||||||| || || |||||||| |||||||||||| Sbjct: 426 atcagggttcaggctcaggagagcgttgcgctatcacttgtgaaggagatcaccgagtac 485 Query: 193 ttccacggcgactcggcgaaagaggaggcccatcctttcaggatcttcatggtcgtcagg 252 ||||| || ||||| ||||||||||| || || |||||||||||||||||||| |||||| Sbjct: 486 ttccatggtgactctgcgaaagaggaagctcaccctttcaggatcttcatggtggtcagg 545 Query: 253 gatttcctctcggttctcactgaggtgtgcagggaggtcggcaggatcaatgaccgcacg 312 ||||||||||| ||||| | | || |||| ||| || ||||||||||||||||||||| Sbjct: 546 gatttcctctcagttcttgatcaagtctgcaaggaagttggcaggatcaatgaccgcacg 605 Query: 313 atcgccagctccgtgcgccatttccccgtgcccgtcaacccgatgatgccgcagttgttc 372 ||||| ||||| |||||||||||||| || ||||||||||| |||||||| ||||||||| Sbjct: 606 atcgctagctcggtgcgccatttcccagtacccgtcaacccaatgatgccacagttgttc 665 Query: 373 ccgaggattcacgcgttgagagctggaatctc 404 || |||||||| || ||||||||||||||||| Sbjct: 666 cccaggattcatgctttgagagctggaatctc 697
>gb|AY108789.1| Zea mays PCO072847 mRNA sequence Length = 505 Score = 260 bits (131), Expect = 1e-65 Identities = 281/331 (84%) Strand = Plus / Plus Query: 83 ggttccatgacacgatgcagaagttcttgaagaaggccgatgacgagatcctcagggttc 142 ||||||| |||| |||||||| |||| |||||||||| || |||||||| ||||| | | Sbjct: 15 ggttccacgacaggatgcagaggttcctgaagaaggcggacgacgagataatcaggatcc 74 Query: 143 aagctcaggagagcgttgcgctgtccctcgtgaaggaaatcaccgagtacttccacggcg 202 | ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 75 agtgccaggagagcgtggcgctgtcgctcgtgaaggagatcaccgagtacttccacggcg 134 Query: 203 actcggcgaaagaggaggcccatcctttcaggatcttcatggtcgtcagggatttcctct 262 |||| || || ||||||||||| || |||||||||||||||||||||||||| |||||| Sbjct: 135 actccgccaaggaggaggcccacccgttcaggatcttcatggtcgtcagggacttcctcg 194 Query: 263 cggttctcactgaggtgtgcagggaggtcggcaggatcaatgaccgcacgatcgccagct 322 |||| ||| |||| |||||||| || |||||| |||| || || || |||||||||| Sbjct: 195 cggtcctcgaccaggtctgcagggaagtgggcagggtcaacgagcgtaccatcgccagct 254 Query: 323 ccgtgcgccatttccccgtgcccgtcaacccgatgatgccgcagttgttcccgaggattc 382 |||||||||| ||||||||||| || ||||| | || ||||||| |||||||| || ||| Sbjct: 255 ccgtgcgccacttccccgtgccggttaacccaacgacgccgcagctgttcccgcggcttc 314 Query: 383 acgcgttgagagctggaatctccgacgacga 413 | || ||||||||||| ||||||||||||| Sbjct: 315 atgctttgagagctgggttctccgacgacga 345
>emb|CT830063.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA208K17, full insert sequence Length = 615 Score = 178 bits (90), Expect = 3e-41 Identities = 195/230 (84%) Strand = Plus / Plus Query: 596 cgccctgctccacgtgctgctcctgtgagaaacccaccagctccagcccgtcaagctcct 655 |||||||| |||||||||||||| ||||| ||||| || ||||| | || |||||| Sbjct: 145 cgccctgcaccacgtgctgctcccgtgaggaaccctccgcagccagcaaggcaggctcct 204 Query: 656 cctcctgctactacccagagcagcggtggcggtatcatgagcggaattgggtccactatt 715 ||||| ||| || |||||| | | |||||| |||| || | |||||||| ||||||||| Sbjct: 205 cctccagctcctgcccagaacggaggtggctctatcctgggaggaattggttccactatt 264 Query: 716 gctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgctgtg 775 ||||| ||||||||||| |||||||| ||||| ||||| || ||||||||||| ||||| Sbjct: 265 gctcaaggcatggcttttggtactggtagtgccatggcacatagggctgttgatgctgta 324 Query: 776 atgggtccccgtaccattcagcatgagactgttgtgtctgaggccgctgc 825 ||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct: 325 atgggtccccgtaccattcagcatgagactgttgtctccgaggctgctgc 374 Score = 113 bits (57), Expect = 1e-21 Identities = 81/89 (91%) Strand = Plus / Plus Query: 875 tccaaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttc 934 ||||||||||||||||| ||||||||| |||| || || ||||||||||||||||| ||| Sbjct: 427 tccaaggccttccaagactgcatcaacaactatggaagtgacatcagcaagtgccaattc 486 Query: 935 taccttgacatgctgaacgagtgccgccg 963 ||||| || |||||||||||||||||||| Sbjct: 487 tacctggatatgctgaacgagtgccgccg 515
>emb|CT830062.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA015H07, full insert sequence Length = 759 Score = 178 bits (90), Expect = 3e-41 Identities = 195/230 (84%) Strand = Plus / Plus Query: 596 cgccctgctccacgtgctgctcctgtgagaaacccaccagctccagcccgtcaagctcct 655 |||||||| |||||||||||||| ||||| ||||| || ||||| | || |||||| Sbjct: 123 cgccctgcaccacgtgctgctcccgtgaggaaccctccgcagccagcaaggcaggctcct 182 Query: 656 cctcctgctactacccagagcagcggtggcggtatcatgagcggaattgggtccactatt 715 ||||| ||| || |||||| | | |||||| |||| || | |||||||| ||||||||| Sbjct: 183 cctccagctcctgcccagaacggaggtggctctatcctgggaggaattggttccactatt 242 Query: 716 gctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgctgtg 775 ||||| ||||||||||| |||||||| ||||| ||||| || ||||||||||| ||||| Sbjct: 243 gctcaaggcatggcttttggtactggtagtgccatggcacatagggctgttgatgctgta 302 Query: 776 atgggtccccgtaccattcagcatgagactgttgtgtctgaggccgctgc 825 ||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct: 303 atgggtccccgtaccattcagcatgagactgttgtctccgaggctgctgc 352 Score = 113 bits (57), Expect = 1e-21 Identities = 81/89 (91%) Strand = Plus / Plus Query: 875 tccaaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttc 934 ||||||||||||||||| ||||||||| |||| || || ||||||||||||||||| ||| Sbjct: 405 tccaaggccttccaagactgcatcaacaactatggaagtgacatcagcaagtgccaattc 464 Query: 935 taccttgacatgctgaacgagtgccgccg 963 ||||| || |||||||||||||||||||| Sbjct: 465 tacctggatatgctgaacgagtgccgccg 493
>ref|NM_001057461.1| Oryza sativa (japonica cultivar-group) Os03g0685500 (Os03g0685500) mRNA, complete cds Length = 788 Score = 178 bits (90), Expect = 3e-41 Identities = 195/230 (84%) Strand = Plus / Plus Query: 596 cgccctgctccacgtgctgctcctgtgagaaacccaccagctccagcccgtcaagctcct 655 |||||||| |||||||||||||| ||||| ||||| || ||||| | || |||||| Sbjct: 124 cgccctgcaccacgtgctgctcccgtgaggaaccctccgcagccagcaaggcaggctcct 183 Query: 656 cctcctgctactacccagagcagcggtggcggtatcatgagcggaattgggtccactatt 715 ||||| ||| || |||||| | | |||||| |||| || | |||||||| ||||||||| Sbjct: 184 cctccagctcctgcccagaacggaggtggctctatcctgggaggaattggttccactatt 243 Query: 716 gctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgctgtg 775 ||||| ||||||||||| |||||||| ||||| ||||| || ||||||||||| ||||| Sbjct: 244 gctcaaggcatggcttttggtactggtagtgccatggcacatagggctgttgatgctgta 303 Query: 776 atgggtccccgtaccattcagcatgagactgttgtgtctgaggccgctgc 825 ||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct: 304 atgggtccccgtaccattcagcatgagactgttgtctccgaggctgctgc 353 Score = 113 bits (57), Expect = 1e-21 Identities = 81/89 (91%) Strand = Plus / Plus Query: 875 tccaaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttc 934 ||||||||||||||||| ||||||||| |||| || || ||||||||||||||||| ||| Sbjct: 406 tccaaggccttccaagactgcatcaacaactatggaagtgacatcagcaagtgccaattc 465 Query: 935 taccttgacatgctgaacgagtgccgccg 963 ||||| || |||||||||||||||||||| Sbjct: 466 tacctggatatgctgaacgagtgccgccg 494
>dbj|AB110171.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 13YPB021 Length = 732 Score = 178 bits (90), Expect = 3e-41 Identities = 195/230 (84%) Strand = Plus / Plus Query: 596 cgccctgctccacgtgctgctcctgtgagaaacccaccagctccagcccgtcaagctcct 655 |||||||| |||||||||||||| ||||| ||||| || ||||| | || |||||| Sbjct: 96 cgccctgcaccacgtgctgctcccgtgaggaaccctccgcagccagcaaggcaggctcct 155 Query: 656 cctcctgctactacccagagcagcggtggcggtatcatgagcggaattgggtccactatt 715 ||||| ||| || |||||| | | |||||| |||| || | |||||||| ||||||||| Sbjct: 156 cctccagctcctgcccagaacggaggtggctctatcctgggaggaattggttccactatt 215 Query: 716 gctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgctgtg 775 ||||| ||||||||||| |||||||| ||||| ||||| || ||||||||||| ||||| Sbjct: 216 gctcaaggcatggcttttggtactggtagtgccatggcacatagggctgttgatgctgta 275 Query: 776 atgggtccccgtaccattcagcatgagactgttgtgtctgaggccgctgc 825 ||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct: 276 atgggtccccgtaccattcagcatgagactgttgtctccgaggctgctgc 325 Score = 113 bits (57), Expect = 1e-21 Identities = 81/89 (91%) Strand = Plus / Plus Query: 875 tccaaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttc 934 ||||||||||||||||| ||||||||| |||| || || ||||||||||||||||| ||| Sbjct: 378 tccaaggccttccaagactgcatcaacaactatggaagtgacatcagcaagtgccaattc 437 Query: 935 taccttgacatgctgaacgagtgccgccg 963 ||||| || |||||||||||||||||||| Sbjct: 438 tacctggatatgctgaacgagtgccgccg 466
>dbj|AK062080.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-F09, full insert sequence Length = 788 Score = 178 bits (90), Expect = 3e-41 Identities = 195/230 (84%) Strand = Plus / Plus Query: 596 cgccctgctccacgtgctgctcctgtgagaaacccaccagctccagcccgtcaagctcct 655 |||||||| |||||||||||||| ||||| ||||| || ||||| | || |||||| Sbjct: 124 cgccctgcaccacgtgctgctcccgtgaggaaccctccgcagccagcaaggcaggctcct 183 Query: 656 cctcctgctactacccagagcagcggtggcggtatcatgagcggaattgggtccactatt 715 ||||| ||| || |||||| | | |||||| |||| || | |||||||| ||||||||| Sbjct: 184 cctccagctcctgcccagaacggaggtggctctatcctgggaggaattggttccactatt 243 Query: 716 gctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgctgtg 775 ||||| ||||||||||| |||||||| ||||| ||||| || ||||||||||| ||||| Sbjct: 244 gctcaaggcatggcttttggtactggtagtgccatggcacatagggctgttgatgctgta 303 Query: 776 atgggtccccgtaccattcagcatgagactgttgtgtctgaggccgctgc 825 ||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct: 304 atgggtccccgtaccattcagcatgagactgttgtctccgaggctgctgc 353 Score = 113 bits (57), Expect = 1e-21 Identities = 81/89 (91%) Strand = Plus / Plus Query: 875 tccaaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttc 934 ||||||||||||||||| ||||||||| |||| || || ||||||||||||||||| ||| Sbjct: 406 tccaaggccttccaagactgcatcaacaactatggaagtgacatcagcaagtgccaattc 465 Query: 935 taccttgacatgctgaacgagtgccgccg 963 ||||| || |||||||||||||||||||| Sbjct: 466 tacctggatatgctgaacgagtgccgccg 494
>dbj|AK120726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002L22, full insert sequence Length = 761 Score = 170 bits (86), Expect = 7e-39 Identities = 194/230 (84%) Strand = Plus / Plus Query: 596 cgccctgctccacgtgctgctcctgtgagaaacccaccagctccagcccgtcaagctcct 655 |||||||| |||||||||||||| ||||| ||||| || ||||| | || |||||| Sbjct: 125 cgccctgcaccacgtgctgctcccgtgaggaaccctccgcagccagcaaggcaggctcct 184 Query: 656 cctcctgctactacccagagcagcggtggcggtatcatgagcggaattgggtccactatt 715 ||||| ||| || |||||| | | | |||| |||| || | |||||||| ||||||||| Sbjct: 185 cctccagctcctgcccagaacggagttggctctatcctgggaggaattggttccactatt 244 Query: 716 gctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgctgtg 775 ||||| ||||||||||| |||||||| ||||| ||||| || ||||||||||| ||||| Sbjct: 245 gctcaaggcatggcttttggtactggtagtgccatggcacatagggctgttgatgctgta 304 Query: 776 atgggtccccgtaccattcagcatgagactgttgtgtctgaggccgctgc 825 ||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct: 305 atgggtccccgtaccattcagcatgagactgttgtctccgaggctgctgc 354 Score = 113 bits (57), Expect = 1e-21 Identities = 81/89 (91%) Strand = Plus / Plus Query: 875 tccaaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttc 934 ||||||||||||||||| ||||||||| |||| || || ||||||||||||||||| ||| Sbjct: 407 tccaaggccttccaagactgcatcaacaactatggaagtgacatcagcaagtgccaattc 466 Query: 935 taccttgacatgctgaacgagtgccgccg 963 ||||| || |||||||||||||||||||| Sbjct: 467 tacctggatatgctgaacgagtgccgccg 495
>gb|AY596532.1| Saccharum officinarum clone SCQGLR1085E10, complete sequence Length = 887 Score = 135 bits (68), Expect = 4e-28 Identities = 113/128 (88%) Strand = Plus / Plus Query: 698 ggaattgggtccactattgctcagggcatggctttcggtactggcagtgctatggcgcac 757 ||||| |||||||| |||||||| || ||||| || |||||||| ||||| ||||| ||| Sbjct: 304 ggaatcgggtccaccattgctcaaggtatggcatttggtactggtagtgccatggcacac 363 Query: 758 agggctgttgacgctgtgatgggtccccgtaccattcagcatgagactgttgtgtctgag 817 ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| || ||| Sbjct: 364 agggctgttgatgctgtaatgggtccccggaccattcagcatgagactgttgtctcagag 423 Query: 818 gccgctgc 825 || ||||| Sbjct: 424 gctgctgc 431 Score = 131 bits (66), Expect = 6e-27 Identities = 81/86 (94%) Strand = Plus / Plus Query: 878 aaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttctac 937 ||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||||| Sbjct: 484 aaggccttccaagattgtctcaacaactatggcagcgagatcagcaagtgccagttctac 543 Query: 938 cttgacatgctgaacgagtgccgccg 963 |||||||||||||||||||||||||| Sbjct: 544 cttgacatgctgaacgagtgccgccg 569 Score = 58.0 bits (29), Expect = 8e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 596 cgccctgctccacgtgctgctcctgtgagaaacccaccagctccagcccgtcaagctcct 655 ||||| ||||||||||||||||| ||||| ||||||||| ||||| || || |||||| Sbjct: 202 cgcccggctccacgtgctgctccagtgaggaacccaccacagccagcgcgccaggctcct 261 Query: 656 cctcc 660 ||||| Sbjct: 262 cctcc 266
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 127 bits (64), Expect = 1e-25 Identities = 94/104 (90%) Strand = Plus / Minus Query: 722 ggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgctgtgatgggt 781 ||||||||||| |||||||| ||||| ||||| || ||||||||||| ||||| |||||| Sbjct: 27144193 ggcatggcttttggtactggtagtgccatggcacatagggctgttgatgctgtaatgggt 27144134 Query: 782 ccccgtaccattcagcatgagactgttgtgtctgaggccgctgc 825 ||||||||||||||||||||||||||||| || ||||| ||||| Sbjct: 27144133 ccccgtaccattcagcatgagactgttgtctccgaggctgctgc 27144090 Score = 85.7 bits (43), Expect = 3e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 893 tgcatcaaccactacggcagcgacatcagcaagtgccagttctaccttgacatgctgaac 952 ||||||||| |||| || || ||||||||||||||||| |||||||| || ||||||||| Sbjct: 27143648 tgcatcaacaactatggaagtgacatcagcaagtgccaattctacctggatatgctgaac 27143589 Query: 953 gagtgccgccg 963 ||||||||||| Sbjct: 27143588 gagtgccgccg 27143578 Score = 73.8 bits (37), Expect = 1e-09 Identities = 76/89 (85%) Strand = Plus / Plus Query: 172 gtgaaggaaatcaccgagtacttccacggcgactcggcgaaagaggaggcccatcctttc 231 |||||||| ||||| ||||||||||| |||||| | ||||||||||| || |||||| | Sbjct: 5429310 gtgaaggacatcactgagtacttccatggcgacaccgcgaaagaggaagcgcatcctctg 5429369 Query: 232 aggatcttcatggtcgtcagggatttcct 260 ||||| |||||||| || ||||| ||||| Sbjct: 5429370 aggatattcatggtggtgagggacttcct 5429398 Score = 46.1 bits (23), Expect = 0.29 Identities = 59/71 (83%) Strand = Plus / Minus Query: 650 gctcctcctcctgctactacccagagcagcggtggcggtatcatgagcggaattgggtcc 709 ||||||||||| ||| || |||||| | | |||||| |||| || | |||||||| ||| Sbjct: 27144356 gctcctcctccagctcctgcccagaacggaggtggctctatcctgggaggaattggttcc 27144297 Query: 710 actattgctca 720 ||||||||||| Sbjct: 27144296 actattgctca 27144286 Score = 46.1 bits (23), Expect = 0.29 Identities = 32/35 (91%) Strand = Plus / Minus Query: 596 cgccctgctccacgtgctgctcctgtgagaaaccc 630 |||||||| |||||||||||||| ||||| ||||| Sbjct: 27144601 cgccctgcaccacgtgctgctcccgtgaggaaccc 27144567
>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete sequence Length = 111882 Score = 127 bits (64), Expect = 1e-25 Identities = 94/104 (90%) Strand = Plus / Plus Query: 722 ggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgctgtgatgggt 781 ||||||||||| |||||||| ||||| ||||| || ||||||||||| ||||| |||||| Sbjct: 6529 ggcatggcttttggtactggtagtgccatggcacatagggctgttgatgctgtaatgggt 6588 Query: 782 ccccgtaccattcagcatgagactgttgtgtctgaggccgctgc 825 ||||||||||||||||||||||||||||| || ||||| ||||| Sbjct: 6589 ccccgtaccattcagcatgagactgttgtctccgaggctgctgc 6632 Score = 85.7 bits (43), Expect = 3e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 893 tgcatcaaccactacggcagcgacatcagcaagtgccagttctaccttgacatgctgaac 952 ||||||||| |||| || || ||||||||||||||||| |||||||| || ||||||||| Sbjct: 7074 tgcatcaacaactatggaagtgacatcagcaagtgccaattctacctggatatgctgaac 7133 Query: 953 gagtgccgccg 963 ||||||||||| Sbjct: 7134 gagtgccgccg 7144 Score = 46.1 bits (23), Expect = 0.29 Identities = 32/35 (91%) Strand = Plus / Plus Query: 596 cgccctgctccacgtgctgctcctgtgagaaaccc 630 |||||||| |||||||||||||| ||||| ||||| Sbjct: 6121 cgccctgcaccacgtgctgctcccgtgaggaaccc 6155 Score = 46.1 bits (23), Expect = 0.29 Identities = 59/71 (83%) Strand = Plus / Plus Query: 650 gctcctcctcctgctactacccagagcagcggtggcggtatcatgagcggaattgggtcc 709 ||||||||||| ||| || |||||| | | |||||| |||| || | |||||||| ||| Sbjct: 6366 gctcctcctccagctcctgcccagaacggaggtggctctatcctgggaggaattggttcc 6425 Query: 710 actattgctca 720 ||||||||||| Sbjct: 6426 actattgctca 6436
>gb|DQ245864.1| Zea mays clone 21249 mRNA sequence Length = 660 Score = 115 bits (58), Expect = 4e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 878 aaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttctac 937 ||||| ||||||||||| ||||| |||| |||||||| ||||||||||||||||||||| Sbjct: 414 aaggctttccaagattgtctcaacaactatggcagcgagatcagcaagtgccagttctac 473 Query: 938 cttgacatgctgaacgagtgccgccg 963 || ||||||||||||||||||||||| Sbjct: 474 ctagacatgctgaacgagtgccgccg 499 Score = 103 bits (52), Expect = 1e-18 Identities = 97/112 (86%) Strand = Plus / Plus Query: 698 ggaattgggtccactattgctcagggcatggctttcggtactggcagtgctatggcgcac 757 |||||||||||||| |||||||| || ||||| || || || || ||||| ||||| ||| Sbjct: 234 ggaattgggtccaccattgctcaaggtatggcgtttggcacgggtagtgccatggcacac 293 Query: 758 agggctgttgacgctgtgatgggtccccgtaccattcagcatgagactgttg 809 ||||||||||| ||||| | |||||||| |||||||||||||||||||||| Sbjct: 294 agggctgttgatgctgtattaggtccccggaccattcagcatgagactgttg 345
>gb|AY105039.1| Zea mays PCO113080 mRNA sequence Length = 802 Score = 115 bits (58), Expect = 4e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 878 aaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttctac 937 ||||| ||||||||||| ||||| |||| |||||||| ||||||||||||||||||||| Sbjct: 471 aaggctttccaagattgtctcaacaactatggcagcgagatcagcaagtgccagttctac 530 Query: 938 cttgacatgctgaacgagtgccgccg 963 || ||||||||||||||||||||||| Sbjct: 531 ctagacatgctgaacgagtgccgccg 556 Score = 87.7 bits (44), Expect = 9e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 698 ggaattgggtccactattgctcagggcatggctttcggtactggcagtgctatggcgcac 757 |||||||||||||| |||||||| || ||||| || || || || ||||| ||||| ||| Sbjct: 291 ggaattgggtccaccattgctcaaggtatggcgtttggcacgggtagtgccatggcacac 350 Query: 758 agggctgttgacgctgtgatgggtccccgtaccattcagcatgagact 805 |||||||||||| |||| | |||||||| ||||| |||||||||||| Sbjct: 351 agggctgttgactctgtattaggtccccggaccatccagcatgagact 398
>gb|BT017948.1| Zea mays clone EL01N0521H06.c mRNA sequence Length = 700 Score = 107 bits (54), Expect = 9e-20 Identities = 78/86 (90%) Strand = Plus / Plus Query: 878 aaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttctac 937 ||||| ||||||||||| | ||| |||| |||||||| ||||||||||||||||||||| Sbjct: 401 aaggctttccaagattgtctgaacaactatggcagcgagatcagcaagtgccagttctac 460 Query: 938 cttgacatgctgaacgagtgccgccg 963 || ||||||||||||||||||||||| Sbjct: 461 ctagacatgctgaacgagtgccgccg 486 Score = 87.7 bits (44), Expect = 9e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 698 ggaattgggtccactattgctcagggcatggctttcggtactggcagtgctatggcgcac 757 |||||||||||||| |||||||| || ||||| || || || || ||||| ||||| ||| Sbjct: 221 ggaattgggtccaccattgctcaaggtatggcgtttggcacgggtagtgccatggcacac 280 Query: 758 agggctgttgacgctgtgatgggtccccgtaccattcagcatgagact 805 |||||||||||| |||| | |||||||| ||||| |||||||||||| Sbjct: 281 agggctgttgactctgtattaggtccccggaccatccagcatgagact 328
>ref|NM_125836.2| Arabidopsis thaliana unknown protein (AT5G64400) mRNA, complete cds Length = 700 Score = 97.6 bits (49), Expect = 9e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 713 attgctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgct 772 ||||||||||| |||||||| |||||||| ||||| | || |||||||||||||| || Sbjct: 215 attgctcagggtatggcttttggtactggaagtgcagttgcacacagggctgttgattct 274 Query: 773 gtgatgggtccccgtaccattcagcatgagactgttg 809 ||||||||||| || ||||||||||||||| |||||| Sbjct: 275 gtgatgggtccacgaaccattcagcatgaggctgttg 311
>ref|NM_001037060.1| Arabidopsis thaliana unknown protein (AT5G64400) mRNA, complete cds Length = 980 Score = 97.6 bits (49), Expect = 9e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 713 attgctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgct 772 ||||||||||| |||||||| |||||||| ||||| | || |||||||||||||| || Sbjct: 239 attgctcagggtatggcttttggtactggaagtgcagttgcacacagggctgttgattct 298 Query: 773 gtgatgggtccccgtaccattcagcatgagactgttg 809 ||||||||||| || ||||||||||||||| |||||| Sbjct: 299 gtgatgggtccacgaaccattcagcatgaggctgttg 335
>gb|AY063045.1| Arabidopsis thaliana unknown protein (At5g64400) mRNA, complete cds Length = 466 Score = 97.6 bits (49), Expect = 9e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 713 attgctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgct 772 ||||||||||| |||||||| |||||||| ||||| | || |||||||||||||| || Sbjct: 157 attgctcagggtatggcttttggtactggaagtgcagttgcacacagggctgttgattct 216 Query: 773 gtgatgggtccccgtaccattcagcatgagactgttg 809 ||||||||||| || ||||||||||||||| |||||| Sbjct: 217 gtgatgggtccacgaaccattcagcatgaggctgttg 253
>gb|AY034898.1| Arabidopsis thaliana unknown protein (At5g64400) mRNA, complete cds Length = 646 Score = 97.6 bits (49), Expect = 9e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 713 attgctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgct 772 ||||||||||| |||||||| |||||||| ||||| | || |||||||||||||| || Sbjct: 217 attgctcagggtatggcttttggtactggaagtgcagttgcacacagggctgttgattct 276 Query: 773 gtgatgggtccccgtaccattcagcatgagactgttg 809 ||||||||||| || ||||||||||||||| |||||| Sbjct: 277 gtgatgggtccacgaaccattcagcatgaggctgttg 313
>emb|BX830265.1|CNS09YOU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB6ZA07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 691 Score = 97.6 bits (49), Expect = 9e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 713 attgctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgct 772 ||||||||||| |||||||| |||||||| ||||| | || |||||||||||||| || Sbjct: 206 attgctcagggtatggcttttggtactggaagtgcagttgcacacagggctgttgattct 265 Query: 773 gtgatgggtccccgtaccattcagcatgagactgttg 809 ||||||||||| || ||||||||||||||| |||||| Sbjct: 266 gtgatgggtccacgaaccattcagcatgaggctgttg 302
>gb|DQ245787.1| Zea mays clone 20338 mRNA sequence Length = 736 Score = 89.7 bits (45), Expect = 2e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 713 attgctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgct 772 ||||||||||| |||||||| || || || |||||| | ||||| ||||||||||| ||| Sbjct: 216 attgctcagggtatggcttttggaaccggaagtgctgttgcgcatagggctgttgatgct 275 Query: 773 gtgatgggtccccgtaccattcagcatga 801 ||||||||||| || |||||||||||||| Sbjct: 276 gtgatgggtccacgaaccattcagcatga 304 Score = 46.1 bits (23), Expect = 0.29 Identities = 50/59 (84%) Strand = Plus / Plus Query: 878 aaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttcta 936 ||||| |||||||||||| ||| | ||| || ||||||||||||| ||| |||||||| Sbjct: 390 aaggctttccaagattgcgtcagcagctatggaagcgacatcagcaggtgtcagttcta 448
>emb|BX833720.1|CNS09Z9S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL73ZE02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 599 Score = 89.7 bits (45), Expect = 2e-14 Identities = 84/97 (86%) Strand = Plus / Plus Query: 713 attgctcagggcatggctttcggtactggcagtgctatggcgcacagggctgttgacgct 772 ||||||||||| |||||||| |||||||| ||||| | || |||||||||||||| | Sbjct: 173 attgctcagggtatggcttttggtactggaagtgcagttgcacacagggctgttgatttt 232 Query: 773 gtgatgggtccccgtaccattcagcatgagactgttg 809 ||||||||||| || ||||||||||||||| |||||| Sbjct: 233 gtgatgggtccacgaaccattcagcatgaggctgttg 269
>dbj|AB008268.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSJ1 Length = 83594 Score = 81.8 bits (41), Expect = 5e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 725 atggctttcggtactggcagtgctatggcgcacagggctgttgacgctgtgatgggtccc 784 |||||||| |||||||| ||||| | || |||||||||||||| ||||||||||||| Sbjct: 74411 atggcttttggtactggaagtgcagttgcacacagggctgttgattctgtgatgggtcca 74470 Query: 785 cgtaccattcagcatgagactgttg 809 || ||||||||||||||| |||||| Sbjct: 74471 cgaaccattcagcatgaggctgttg 74495
>ref|NM_120994.2| Arabidopsis thaliana unknown protein (AT5G09570) mRNA, complete cds Length = 695 Score = 79.8 bits (40), Expect = 2e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 875 tccaaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttc 934 |||||||| |||||||||||| ||||||| | || ||||||||||| |||||||||||| Sbjct: 368 tccaaggctttccaagattgcgtcaaccattttggaagcgacatcagtaagtgccagttc 427 Query: 935 taccttgacatgctga 950 ||| | |||||||||| Sbjct: 428 tacatggacatgctga 443
>gb|BT003661.1| Arabidopsis thaliana At5g09570 mRNA, complete cds Length = 420 Score = 79.8 bits (40), Expect = 2e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 875 tccaaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttc 934 |||||||| |||||||||||| ||||||| | || ||||||||||| |||||||||||| Sbjct: 304 tccaaggctttccaagattgcgtcaaccattttggaagcgacatcagtaagtgccagttc 363 Query: 935 taccttgacatgctga 950 ||| | |||||||||| Sbjct: 364 tacatggacatgctga 379
>dbj|AK118694.1| Arabidopsis thaliana At5g09570 mRNA for unknown protein, complete cds, clone: RAFL19-96-B14 Length = 695 Score = 79.8 bits (40), Expect = 2e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 875 tccaaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttc 934 |||||||| |||||||||||| ||||||| | || ||||||||||| |||||||||||| Sbjct: 368 tccaaggctttccaagattgcgtcaaccattttggaagcgacatcagtaagtgccagttc 427 Query: 935 taccttgacatgctga 950 ||| | |||||||||| Sbjct: 428 tacatggacatgctga 443
>ref|NM_001055844.1| Oryza sativa (japonica cultivar-group) Os03g0204100 (Os03g0204100) mRNA, complete cds Length = 3054 Score = 73.8 bits (37), Expect = 1e-09 Identities = 76/89 (85%) Strand = Plus / Plus Query: 172 gtgaaggaaatcaccgagtacttccacggcgactcggcgaaagaggaggcccatcctttc 231 |||||||| ||||| ||||||||||| |||||| | ||||||||||| || |||||| | Sbjct: 2546 gtgaaggacatcactgagtacttccatggcgacaccgcgaaagaggaagcgcatcctctg 2605 Query: 232 aggatcttcatggtcgtcagggatttcct 260 ||||| |||||||| || ||||| ||||| Sbjct: 2606 aggatattcatggtggtgagggacttcct 2634
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009J13, from chromosome 3, complete sequence Length = 147205 Score = 73.8 bits (37), Expect = 1e-09 Identities = 76/89 (85%) Strand = Plus / Plus Query: 172 gtgaaggaaatcaccgagtacttccacggcgactcggcgaaagaggaggcccatcctttc 231 |||||||| ||||| ||||||||||| |||||| | ||||||||||| || |||||| | Sbjct: 136263 gtgaaggacatcactgagtacttccatggcgacaccgcgaaagaggaagcgcatcctctg 136322 Query: 232 aggatcttcatggtcgtcagggatttcct 260 ||||| |||||||| || ||||| ||||| Sbjct: 136323 aggatattcatggtggtgagggacttcct 136351
>gb|AC123568.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence Length = 145290 Score = 73.8 bits (37), Expect = 1e-09 Identities = 76/89 (85%) Strand = Plus / Plus Query: 172 gtgaaggaaatcaccgagtacttccacggcgactcggcgaaagaggaggcccatcctttc 231 |||||||| ||||| ||||||||||| |||||| | ||||||||||| || |||||| | Sbjct: 26689 gtgaaggacatcactgagtacttccatggcgacaccgcgaaagaggaagcgcatcctctg 26748 Query: 232 aggatcttcatggtcgtcagggatttcct 260 ||||| |||||||| || ||||| ||||| Sbjct: 26749 aggatattcatggtggtgagggacttcct 26777
>dbj|AK121042.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052I24, full insert sequence Length = 3060 Score = 73.8 bits (37), Expect = 1e-09 Identities = 76/89 (85%) Strand = Plus / Plus Query: 172 gtgaaggaaatcaccgagtacttccacggcgactcggcgaaagaggaggcccatcctttc 231 |||||||| ||||| ||||||||||| |||||| | ||||||||||| || |||||| | Sbjct: 2550 gtgaaggacatcactgagtacttccatggcgacaccgcgaaagaggaagcgcatcctctg 2609 Query: 232 aggatcttcatggtcgtcagggatttcct 260 ||||| |||||||| || ||||| ||||| Sbjct: 2610 aggatattcatggtggtgagggacttcct 2638
>emb|CT988004.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 896 Score = 69.9 bits (35), Expect = 2e-08 Identities = 56/63 (88%) Strand = Plus / Minus Query: 875 tccaaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttc 934 ||||||||||||||||||||| | ||| ||| || |||||||| ||||||||||||||| Sbjct: 406 tccaaggccttccaagattgcgttaacaactttgggagcgacattagcaagtgccagttc 347 Query: 935 tac 937 ||| Sbjct: 346 tac 344 Score = 44.1 bits (22), Expect = 1.1 Identities = 43/50 (86%) Strand = Plus / Minus Query: 716 gctcagggcatggctttcggtactggcagtgctatggcgcacagggctgt 765 ||||| || |||||||| |||||||| ||||| |||| ||||||||||| Sbjct: 562 gctcaaggtatggcttttggtactggaagtgcggtggctcacagggctgt 513
>emb|CT984778.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 932 Score = 69.9 bits (35), Expect = 2e-08 Identities = 56/63 (88%) Strand = Plus / Minus Query: 875 tccaaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttc 934 ||||||||||||||||||||| | ||| ||| || |||||||| ||||||||||||||| Sbjct: 138 tccaaggccttccaagattgcgttaacaactttgggagcgacattagcaagtgccagttc 79 Query: 935 tac 937 ||| Sbjct: 78 tac 76
>gb|AC189313.1| Brassica rapa subsp. pekinensis clone KBrB034N10, complete sequence Length = 130281 Score = 67.9 bits (34), Expect = 8e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 897 tcaaccactacggcagcgacatcagcaagtgccagttctaccttgacatgctgaacgagt 956 ||||| |||| || ||||||||||||||||||||||||||| | |||||||| | ||||| Sbjct: 101404 tcaacaactatggaagcgacatcagcaagtgccagttctacatggacatgctcaccgagt 101463 Query: 957 gc 958 || Sbjct: 101464 gc 101465
>ref|NM_001070937.1| Oryza sativa (japonica cultivar-group) Os10g0347800 (Os10g0347800) mRNA, complete cds Length = 2550 Score = 63.9 bits (32), Expect = 1e-06 Identities = 77/92 (83%) Strand = Plus / Plus Query: 172 gtgaaggaaatcaccgagtacttccacggcgactcggcgaaagaggaggcccatcctttc 231 |||||||| ||||| |||||||||||||| || ||| ||| |||||||| || ||| | Sbjct: 2293 gtgaaggagatcactgagtacttccacggtaacgcggtgaaggaggaggcacaccctctg 2352 Query: 232 aggatcttcatggtcgtcagggatttcctctc 263 ||||| |||||||| || ||||| |||||||| Sbjct: 2353 aggatattcatggtggttagggacttcctctc 2384
>gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0078C13, complete sequence Length = 140553 Score = 63.9 bits (32), Expect = 1e-06 Identities = 77/92 (83%) Strand = Plus / Plus Query: 172 gtgaaggaaatcaccgagtacttccacggcgactcggcgaaagaggaggcccatcctttc 231 |||||||| ||||| |||||||||||||| || ||| ||| |||||||| || ||| | Sbjct: 66954 gtgaaggagatcactgagtacttccacggtaacgcggtgaaggaggaggcacaccctctg 67013 Query: 232 aggatcttcatggtcgtcagggatttcctctc 263 ||||| |||||||| || ||||| |||||||| Sbjct: 67014 aggatattcatggtggttagggacttcctctc 67045
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 63.9 bits (32), Expect = 1e-06 Identities = 77/92 (83%) Strand = Plus / Minus Query: 172 gtgaaggaaatcaccgagtacttccacggcgactcggcgaaagaggaggcccatcctttc 231 |||||||| ||||| |||||||||||||| || ||| ||| |||||||| || ||| | Sbjct: 9967001 gtgaaggagatcactgagtacttccacggtaacgcggtgaaggaggaggcacaccctctg 9966942 Query: 232 aggatcttcatggtcgtcagggatttcctctc 263 ||||| |||||||| || ||||| |||||||| Sbjct: 9966941 aggatattcatggtggttagggacttcctctc 9966910
>gb|DQ245287.1| Zea mays clone 14323 mRNA sequence Length = 703 Score = 58.0 bits (29), Expect = 8e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 701 attgggtccactattgctcagggcatggctttcggtactggcagtgctatggcgcacagg 760 ||||| ||||| || |||||||| |||||||| || || || || || | || || ||| Sbjct: 223 attggttccaccatagctcagggtatggcttttggaaccggaagcgcagttgcacatagg 282 Query: 761 gctgttgacgctgtgatgggtccccgtaccattcagcatgagactgttg 809 |||||||| |||| ||||| || ||||||||||||||||| ||||||| Sbjct: 283 gctgttgattctgtcatgggcccacgtaccattcagcatgaaactgttg 331 Score = 58.0 bits (29), Expect = 8e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 878 aaggccttccaagattgcatcaaccactacggcagcgacatcagcaagtgccagttctac 937 ||||| |||||||||||||||| | ||| || |||||||| |||||||| ||||||||| Sbjct: 400 aaggctttccaagattgcatcagcagctatggaagcgacattagcaagtgtcagttctac 459 Query: 938 cttgacatg 946 | |||||| Sbjct: 460 atggacatg 468
>emb|AL353994.1|ATF17I14 Arabidopsis thaliana DNA chromosome 5, BAC clone F17I14 (ESSA project) Length = 92491 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 911 agcgacatcagcaagtgccagttctaccttgacatgctga 950 ||||||||||| ||||||||||||||| | |||||||||| Sbjct: 76831 agcgacatcagtaagtgccagttctacatggacatgctga 76792
>gb|AY389758.1| Hyacinthus orientalis unknown mRNA Length = 606 Score = 52.0 bits (26), Expect = 0.005 Identities = 89/110 (80%) Strand = Plus / Plus Query: 698 ggaattgggtccactattgctcagggcatggctttcggtactggcagtgctatggcgcac 757 |||||||| || ||||||||||| || |||||||| || ||||| ||||| | || ||| Sbjct: 159 ggaattggttcaactattgctcaaggtatggcttttggcactggaagtgccgtcgctcac 218 Query: 758 agggctgttgacgctgtgatgggtccccgtaccattcagcatgagactgt 807 |||||||| ||| | || ||||| || || ||||| ||||| || ||||| Sbjct: 219 agggctgtggactcagtcatgggacctcgaaccatccagcacgaaactgt 268
>gb|AC165080.4| Mus musculus BAC clone RP24-93F20 from chromosome 9, complete sequence Length = 194427 Score = 50.1 bits (25), Expect = 0.019 Identities = 25/25 (100%) Strand = Plus / Minus Query: 649 agctcctcctcctgctactacccag 673 ||||||||||||||||||||||||| Sbjct: 167846 agctcctcctcctgctactacccag 167822
>gb|U63545.1|MMNKTR2 Mus musculus natural killer tumor recognition protein (Nktr) gene, exons 6, 7 and 8, and partial cds Length = 2859 Score = 50.1 bits (25), Expect = 0.019 Identities = 25/25 (100%) Strand = Plus / Plus Query: 649 agctcctcctcctgctactacccag 673 ||||||||||||||||||||||||| Sbjct: 1291 agctcctcctcctgctactacccag 1315
>ref|NM_001070215.1| Oryza sativa (japonica cultivar-group) Os09g0517600 (Os09g0517600) mRNA, complete cds Length = 2861 Score = 44.1 bits (22), Expect = 1.1 Identities = 61/74 (82%) Strand = Plus / Plus Query: 145 gctcaggagagcgttgcgctgtccctcgtgaaggaaatcaccgagtacttccacggcgac 204 |||||||||||| | || || |||||||| | ||| | ||||||| ||||||||| ||| Sbjct: 2321 gctcaggagagcctcgccctctccctcgtcagggagacgaccgagttcttccacggtgac 2380 Query: 205 tcggcgaaagagga 218 |||| ||| ||||| Sbjct: 2381 tcggtgaaggagga 2394
>emb|CT984287.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 447 Score = 44.1 bits (22), Expect = 1.1 Identities = 79/98 (80%) Strand = Plus / Plus Query: 148 caggagagcgttgcgctgtccctcgtgaaggaaatcaccgagtacttccacggcgactcg 207 ||||| |||||||| |||| || || || || ||||| ||||| |||||||| ||||| Sbjct: 6 caggaaagcgttgccatgtctctagtaaaagagatcacagagtatttccacggagactca 65 Query: 208 gcgaaagaggaggcccatcctttcaggatcttcatggt 245 || ||||| || || || || ||||| ||||||||||| Sbjct: 66 gctaaagaagaagctcacccattcagaatcttcatggt 103
>emb|CT980768.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 447 Score = 44.1 bits (22), Expect = 1.1 Identities = 79/98 (80%) Strand = Plus / Plus Query: 148 caggagagcgttgcgctgtccctcgtgaaggaaatcaccgagtacttccacggcgactcg 207 ||||| |||||||| |||| || || || || ||||| ||||| |||||||| ||||| Sbjct: 6 caggaaagcgttgccatgtctctagtaaaagagatcacagagtatttccacggagactca 65 Query: 208 gcgaaagaggaggcccatcctttcaggatcttcatggt 245 || ||||| || || || || ||||| ||||||||||| Sbjct: 66 gctaaagaagaagctcacccattcagaatcttcatggt 103
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 44.1 bits (22), Expect = 1.1 Identities = 61/74 (82%) Strand = Plus / Plus Query: 145 gctcaggagagcgttgcgctgtccctcgtgaaggaaatcaccgagtacttccacggcgac 204 |||||||||||| | || || |||||||| | ||| | ||||||| ||||||||| ||| Sbjct: 19887402 gctcaggagagcctcgccctctccctcgtcagggagacgaccgagttcttccacggtgac 19887461 Query: 205 tcggcgaaagagga 218 |||| ||| ||||| Sbjct: 19887462 tcggtgaaggagga 19887475
>gb|AF283321.1|AF283320S2 Homo sapiens low density lipoprotein receptor-related protein 5 (LRP5) gene, exons 10 through 23 and complete cds Length = 64475 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 862 gtgtggcaacccatccaaggcc 883 |||||||||||||||||||||| Sbjct: 9647 gtgtggcaacccatccaaggcc 9668
>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0034B12 Length = 124083 Score = 44.1 bits (22), Expect = 1.1 Identities = 61/74 (82%) Strand = Plus / Plus Query: 145 gctcaggagagcgttgcgctgtccctcgtgaaggaaatcaccgagtacttccacggcgac 204 |||||||||||| | || || |||||||| | ||| | ||||||| ||||||||| ||| Sbjct: 111842 gctcaggagagcctcgccctctccctcgtcagggagacgaccgagttcttccacggtgac 111901 Query: 205 tcggcgaaagagga 218 |||| ||| ||||| Sbjct: 111902 tcggtgaaggagga 111915
>dbj|AK101828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068F13, full insert sequence Length = 2862 Score = 44.1 bits (22), Expect = 1.1 Identities = 61/74 (82%) Strand = Plus / Plus Query: 145 gctcaggagagcgttgcgctgtccctcgtgaaggaaatcaccgagtacttccacggcgac 204 |||||||||||| | || || |||||||| | ||| | ||||||| ||||||||| ||| Sbjct: 2322 gctcaggagagcctcgccctctccctcgtcagggagacgaccgagttcttccacggtgac 2381 Query: 205 tcggcgaaagagga 218 |||| ||| ||||| Sbjct: 2382 tcggtgaaggagga 2395
>gb|AC006144.1|AC006144 Homo sapiens PAC clone RP1-296G17 from Xq23, complete sequence Length = 81184 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1057 atgatgatgatatatatatctt 1078 |||||||||||||||||||||| Sbjct: 67014 atgatgatgatatatatatctt 67035
>emb|CR376859.9| Zebrafish DNA sequence from clone CH211-197D4 in linkage group 10, complete sequence Length = 58467 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1045 ctgttttcagtcatgatgatgatatatata 1074 ||||||| |||||||||| ||||||||||| Sbjct: 37032 ctgttttaagtcatgatgctgatatatata 37061
>dbj|AP002366.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-142N13, complete sequence Length = 198720 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 862 gtgtggcaacccatccaaggcc 883 |||||||||||||||||||||| Sbjct: 146130 gtgtggcaacccatccaaggcc 146151
>dbj|AP000807.4| Homo sapiens genomic DNA, chromosome 11, clone:RP11-715N9, complete sequence Length = 204439 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 862 gtgtggcaacccatccaaggcc 883 |||||||||||||||||||||| Sbjct: 92889 gtgtggcaacccatccaaggcc 92910
>emb|CT027639.10| Zebrafish DNA sequence from clone DKEY-8F23 in linkage group 21, complete sequence Length = 33553 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1066 atatatatatcttttaaataa 1086 ||||||||||||||||||||| Sbjct: 21235 atatatatatcttttaaataa 21215
>gb|AC174339.10| Medicago truncatula clone mth2-161b15, complete sequence Length = 128024 Score = 42.1 bits (21), Expect = 4.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 893 tgcatcaaccactacggcagcgacatcagcaagtgccagtt 933 ||||||||||||||||| | || || |||||||||||||| Sbjct: 122877 tgcatcaaccactacggaactgagattagcaagtgccagtt 122917
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 ccgtgcccgtcaacccgatga 358 ||||||||||||||||||||| Sbjct: 903950 ccgtgcccgtcaacccgatga 903930
>gb|AC090668.7| Homo sapiens 12 BAC RP11-791O13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111375 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 aaagaggaggcccatcctttc 231 ||||||||||||||||||||| Sbjct: 49558 aaagaggaggcccatcctttc 49578
>gb|AE005985.1| Caulobacter crescentus CB15 section 311 of 359 of the complete genome Length = 12693 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 gtcggcaggatcaatgaccgc 309 ||||||||||||||||||||| Sbjct: 12307 gtcggcaggatcaatgaccgc 12287
>emb|AL365274.17| Human DNA sequence from clone RP11-298A17 on chromosome 9 Contains the DAB2IP gene for DAB2 interacting protein (AF9Q34, DIP1/2, KIAA1743) and four CpG islands, complete sequence Length = 171941 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 963 ggggaggagctggggctggtt 983 ||||||||||||||||||||| Sbjct: 86822 ggggaggagctggggctggtt 86802
>gb|AY129338.1| Mycobacteriophage Omega, complete sequence Length = 110865 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 626 aacccaccagctccagcccgt 646 ||||||||||||||||||||| Sbjct: 48835 aacccaccagctccagcccgt 48855
>gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, complete sequence Length = 197775 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 gatgcagaagttcttgaagaa 116 ||||||||||||||||||||| Sbjct: 39249 gatgcagaagttcttgaagaa 39229
>dbj|AP006197.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-360J22, complete sequence Length = 159320 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1064 tgatatatatatcttttaaat 1084 ||||||||||||||||||||| Sbjct: 11299 tgatatatatatcttttaaat 11279
>dbj|AP006195.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-278C16, complete sequence Length = 157800 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1064 tgatatatatatcttttaaat 1084 ||||||||||||||||||||| Sbjct: 89604 tgatatatatatcttttaaat 89584
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1068 atatatatcttttaaataatt 1088 ||||||||||||||||||||| Sbjct: 757353 atatatatcttttaaataatt 757373
>dbj|AB041992.1| Homo sapiens genomic DNA, chromosome 6q21, clone:576A9, complete sequence Length = 112519 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1064 tgatatatatatcttttaaat 1084 ||||||||||||||||||||| Sbjct: 45480 tgatatatatatcttttaaat 45460
>gb|AY863211.1| Mortierella verticillata mitochondrion, complete genome Length = 58745 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1066 atatatatatcttttaaataa 1086 ||||||||||||||||||||| Sbjct: 28668 atatatatatcttttaaataa 28648
>dbj|AP002529.1| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section 2/4 Length = 300000 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1064 tgatatatatatcttttaaat 1084 ||||||||||||||||||||| Sbjct: 245775 tgatatatatatcttttaaat 245755 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 184,945,146 Number of extensions: 10190039 Number of successful extensions: 223479 Number of sequences better than 10.0: 69 Number of HSP's gapped: 223468 Number of HSP's successfully gapped: 96 Length of query: 1194 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1171 Effective length of database: 18,503,978,556 Effective search space: 21668158889076 Effective search space used: 21668158889076 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
