ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf29f21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 81.8 bits (41), Expect = 1e-11 Identities = 59/65 (90%) Strand = Plus / Plus Query: 434 ggctgtggcgtctcagggacgcagttgaggaggctgaggattccatcgatgaacttgagt 493 ||||||||| |||||||| ||||| ||||||||||||||| |||||||||| ||||||| Sbjct: 5500885 ggctgtggcagctcagggatgcagtcgaggaggctgaggatgccatcgatgagcttgagt 5500944 Query: 494 actac 498 ||||| Sbjct: 5500945 actac 5500949 Score = 79.8 bits (40), Expect = 5e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 431 catggctgtggcgtctcagggacgcagttgaggaggctgaggattccatcgatgaacttg 490 |||||||||||| |||||||| ||||||||| ||||||||||| | |||||||| |||| Sbjct: 5544099 catggctgtggcagctcagggatgcagttgagaaggctgaggatgctatcgatgagcttg 5544040 Query: 491 agtactac 498 |||||||| Sbjct: 5544039 agtactac 5544032 Score = 77.8 bits (39), Expect = 2e-10 Identities = 120/147 (81%) Strand = Plus / Minus Query: 1342 ttgagctcttcaatcatcatgtgttctctggtttgaactcacaagcctacatgcacttca 1401 |||| ||||||||||||||||| || ||| ||||||| | || | ||| | ||||||| Sbjct: 5749227 ttgaactcttcaatcatcatgtattttctagtttgaatttgcaggactatagccacttca 5749168 Query: 1402 aattaattggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtta 1461 || | ||||||||||||||||| |||||| ||||| ||||||||||||| ||||| | Sbjct: 5749167 aaaagactggagaacaaattgcaaggaaactgggaggatgtcccttggtaattaaggtca 5749108 Query: 1462 caagtggccatttgcgaggtaatatga 1488 | |||| ||||||| |||||| |||| Sbjct: 5749107 cctgtggacatttgcaaggtaacatga 5749081 Score = 75.8 bits (38), Expect = 7e-10 Identities = 100/118 (84%), Gaps = 2/118 (1%) Strand = Plus / Minus Query: 1139 tttgctagttttggatgatgtctgggaagataagaaactacatgaatgggaaaggttatt 1198 |||||| ||||| |||||||| ||||||||||||||| || || ||||||||| ||| || Sbjct: 5379578 tttgcttgttttagatgatgtgtgggaagataagaaaatagataaatgggaaaagttgtt 5379519 Query: 1199 tgctcctctgagg-cagctgaacactgggagcaagattttgttgacaacccgaatgca 1255 ||||||||| ||| ||| ||| | ||||||||| |||||||| ||||| || ||||| Sbjct: 5379518 tgctcctctaaggacag-ggaagagtgggagcaaaattttgttaacaacacggatgca 5379462 Score = 75.8 bits (38), Expect = 7e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 916 ttggtcatggtggcatggggaagactgctttggctcagagcatatg 961 ||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 5749650 ttggtcatggtggtatggggaagactactttggctcagagcatatg 5749605 Score = 73.8 bits (37), Expect = 3e-09 Identities = 58/65 (89%) Strand = Plus / Plus Query: 421 gccctggatgcatggctgtggcgtctcagggacgcagttgaggaggctgaggattccatc 480 ||||| |||||||||||||||| ||||| || ||||| ||||||||||||||| ||||| Sbjct: 5474441 gccctagatgcatggctgtggcagctcagagatgcagtcgaggaggctgaggatgccatc 5474500 Query: 481 gatga 485 ||||| Sbjct: 5474501 gatga 5474505 Score = 65.9 bits (33), Expect = 7e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 1408 ttggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtt 1460 |||||||| |||| |||||||||||| |||| |||||||||||||| |||||| Sbjct: 5475408 ttggagaagaaatcgcaaagaaactaagagggtgtcccttggtaactaaggtt 5475460 Score = 63.9 bits (32), Expect = 3e-06 Identities = 35/36 (97%) Strand = Plus / Minus Query: 1223 tgggagcaagattttgttgacaacccgaatgcaatc 1258 |||||| ||||||||||||||||||||||||||||| Sbjct: 5543315 tgggaggaagattttgttgacaacccgaatgcaatc 5543280 Score = 60.0 bits (30), Expect = 4e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 412 cagagcagcgccctggatgcatggctgtggcgtctcagggacgcagttgaggaggctgag 471 |||||||| || || ||||||||| | |||| |||||| |||||||||||||||||||| Sbjct: 5380309 cagagcagtgcactagatgcatggttatggcagctcaggcacgcagttgaggaggctgag 5380250 Query: 472 ga 473 || Sbjct: 5380249 ga 5380248 Score = 60.0 bits (30), Expect = 4e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 445 ctcagggacgcagttgaggaggctgaggattccatcgatgaacttgagta 494 ||||||||||| || ||||||||||||||| |||||||||| || ||||| Sbjct: 5503100 ctcagggacgccgtcgaggaggctgaggatgccatcgatgagctcgagta 5503149 Score = 60.0 bits (30), Expect = 4e-05 Identities = 90/110 (81%) Strand = Plus / Minus Query: 1585 atcttcctacagagttgcagatgtgctttcgatattgtagcttgtttcccgtggaccatg 1644 ||||||| || ||||| ||||| |||||| | | ||||||||| ||||| | |||||| Sbjct: 5748984 atcttccaactgagttacagatttgctttaggttttgtagcttatttcctgaggaccaca 5748925 Query: 1645 aatttcgcaaggaagagttagtgaagatgtggattggttcaggactgatc 1694 |||||||||||||||| | ||| | |||||||| |||||||| ||||| Sbjct: 5748924 aatttcgcaaggaagatcttgtgcatatgtggatgtgttcaggattgatc 5748875 Score = 58.0 bits (29), Expect = 2e-04 Identities = 29/29 (100%) Strand = Plus / Plus Query: 1230 aagattttgttgacaacccgaatgcaatc 1258 ||||||||||||||||||||||||||||| Sbjct: 5475233 aagattttgttgacaacccgaatgcaatc 5475261 Score = 58.0 bits (29), Expect = 2e-04 Identities = 48/53 (90%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 1409 tggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtta 1461 ||||||| ||||||||| ||||||| |||| |||||||||||||| ||||||| Sbjct: 5543132 tggagaaaaaattgcaa-gaaactaagagggtgtcccttggtaacaaaggtta 5543081 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 1414 aacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggttacaagtggccatt 1473 ||||||||| |||||||||||||| |||||| ||||||| |||||| ||||||||| Sbjct: 5379306 aacaaattgtgaagaaactaggaggatgtcccctggtaacaaaggttgtcggtggccatt 5379247 Query: 1474 tgcg 1477 |||| Sbjct: 5379246 tgcg 5379243 Score = 52.0 bits (26), Expect = 0.011 Identities = 41/46 (89%) Strand = Plus / Plus Query: 814 gagaaaatgagaagaaacaaatcattggatggctgaccaacacatc 859 |||||||||||||| |||| || |||||||||||||||| ||||| Sbjct: 5474814 gagaaaatgagaaggaacatattgttggatggctgaccaatacatc 5474859 Score = 50.1 bits (25), Expect = 0.042 Identities = 37/41 (90%) Strand = Plus / Minus Query: 1318 aaggactagaagaagataagaatcttgagctcttcaatcat 1358 ||||||||||||||| | | |||||||||||||||| |||| Sbjct: 5379402 aaggactagaagaaggtgaaaatcttgagctcttcagtcat 5379362 Score = 50.1 bits (25), Expect = 0.042 Identities = 34/37 (91%) Strand = Plus / Minus Query: 916 ttggtcatggtggcatggggaagactgctttggctca 952 ||||||| |||||||||||||||||| | |||||||| Sbjct: 5379801 ttggtcacggtggcatggggaagactacgttggctca 5379765 Score = 50.1 bits (25), Expect = 0.042 Identities = 28/29 (96%) Strand = Plus / Plus Query: 1230 aagattttgttgacaacccgaatgcaatc 1258 |||||||| |||||||||||||||||||| Sbjct: 5504260 aagatttttttgacaacccgaatgcaatc 5504288 Score = 50.1 bits (25), Expect = 0.042 Identities = 46/53 (86%) Strand = Plus / Plus Query: 1409 tggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtta 1461 ||||||| |||| |||||||| || |||| |||||||||||||| ||||||| Sbjct: 5504435 tggagaaaaaataacaaagaaattaagagggtgtcccttggtaacaaaggtta 5504487 Score = 48.1 bits (24), Expect = 0.16 Identities = 27/28 (96%) Strand = Plus / Minus Query: 1670 gatgtggattggttcaggactgatctca 1697 ||||||||| |||||||||||||||||| Sbjct: 5379050 gatgtggataggttcaggactgatctca 5379023 Score = 46.1 bits (23), Expect = 0.65 Identities = 44/51 (86%) Strand = Plus / Minus Query: 1882 taatgcatgaattggcaaggactatgtctttaggtgaatgtgcaagaataa 1932 |||||||||||||||||||| | | |||| || |||||||||||||||| Sbjct: 5378877 taatgcatgaattggcaaggtatgtatcttctggggaatgtgcaagaataa 5378827 Score = 46.1 bits (23), Expect = 0.65 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1146 gttttggatgatgtctgggaaga 1168 ||||||||||||||||||||||| Sbjct: 5469351 gttttggatgatgtctgggaaga 5469329 Score = 44.1 bits (22), Expect = 2.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1147 ttttggatgatgtctgggaagataag 1172 |||| ||||||||||||||||||||| Sbjct: 5475150 ttttagatgatgtctgggaagataag 5475175
>emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb0084C05 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 117585 Score = 81.8 bits (41), Expect = 1e-11 Identities = 59/65 (90%) Strand = Plus / Minus Query: 434 ggctgtggcgtctcagggacgcagttgaggaggctgaggattccatcgatgaacttgagt 493 ||||||||| |||||||| ||||| ||||||||||||||| |||||||||| ||||||| Sbjct: 97268 ggctgtggcagctcagggatgcagtcgaggaggctgaggatgccatcgatgagcttgagt 97209 Query: 494 actac 498 ||||| Sbjct: 97208 actac 97204 Score = 79.8 bits (40), Expect = 5e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 431 catggctgtggcgtctcagggacgcagttgaggaggctgaggattccatcgatgaacttg 490 |||||||||||| |||||||| ||||||||| ||||||||||| | |||||||| |||| Sbjct: 54040 catggctgtggcagctcagggatgcagttgagaaggctgaggatgctatcgatgagcttg 54099 Query: 491 agtactac 498 |||||||| Sbjct: 54100 agtactac 54107 Score = 63.9 bits (32), Expect = 3e-06 Identities = 35/36 (97%) Strand = Plus / Plus Query: 1223 tgggagcaagattttgttgacaacccgaatgcaatc 1258 |||||| ||||||||||||||||||||||||||||| Sbjct: 54824 tgggaggaagattttgttgacaacccgaatgcaatc 54859 Score = 60.0 bits (30), Expect = 4e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 445 ctcagggacgcagttgaggaggctgaggattccatcgatgaacttgagta 494 ||||||||||| || ||||||||||||||| |||||||||| || ||||| Sbjct: 95053 ctcagggacgccgtcgaggaggctgaggatgccatcgatgagctcgagta 95004 Score = 58.0 bits (29), Expect = 2e-04 Identities = 48/53 (90%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 1409 tggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtta 1461 ||||||| ||||||||| ||||||| |||| |||||||||||||| ||||||| Sbjct: 55007 tggagaaaaaattgcaa-gaaactaagagggtgtcccttggtaacaaaggtta 55058 Score = 50.1 bits (25), Expect = 0.042 Identities = 46/53 (86%) Strand = Plus / Minus Query: 1409 tggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtta 1461 ||||||| |||| |||||||| || |||| |||||||||||||| ||||||| Sbjct: 93718 tggagaaaaaataacaaagaaattaagagggtgtcccttggtaacaaaggtta 93666 Score = 50.1 bits (25), Expect = 0.042 Identities = 28/29 (96%) Strand = Plus / Minus Query: 1230 aagattttgttgacaacccgaatgcaatc 1258 |||||||| |||||||||||||||||||| Sbjct: 93893 aagatttttttgacaacccgaatgcaatc 93865
>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160556 Score = 81.8 bits (41), Expect = 1e-11 Identities = 59/65 (90%) Strand = Plus / Plus Query: 434 ggctgtggcgtctcagggacgcagttgaggaggctgaggattccatcgatgaacttgagt 493 ||||||||| |||||||| ||||| ||||||||||||||| |||||||||| ||||||| Sbjct: 53690 ggctgtggcagctcagggatgcagtcgaggaggctgaggatgccatcgatgagcttgagt 53749 Query: 494 actac 498 ||||| Sbjct: 53750 actac 53754 Score = 79.8 bits (40), Expect = 5e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 431 catggctgtggcgtctcagggacgcagttgaggaggctgaggattccatcgatgaacttg 490 |||||||||||| |||||||| ||||||||| ||||||||||| | |||||||| |||| Sbjct: 96904 catggctgtggcagctcagggatgcagttgagaaggctgaggatgctatcgatgagcttg 96845 Query: 491 agtactac 498 |||||||| Sbjct: 96844 agtactac 96837 Score = 73.8 bits (37), Expect = 3e-09 Identities = 58/65 (89%) Strand = Plus / Plus Query: 421 gccctggatgcatggctgtggcgtctcagggacgcagttgaggaggctgaggattccatc 480 ||||| |||||||||||||||| ||||| || ||||| ||||||||||||||| ||||| Sbjct: 27246 gccctagatgcatggctgtggcagctcagagatgcagtcgaggaggctgaggatgccatc 27305 Query: 481 gatga 485 ||||| Sbjct: 27306 gatga 27310 Score = 65.9 bits (33), Expect = 7e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 1408 ttggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtt 1460 |||||||| |||| |||||||||||| |||| |||||||||||||| |||||| Sbjct: 28213 ttggagaagaaatcgcaaagaaactaagagggtgtcccttggtaactaaggtt 28265 Score = 63.9 bits (32), Expect = 3e-06 Identities = 35/36 (97%) Strand = Plus / Minus Query: 1223 tgggagcaagattttgttgacaacccgaatgcaatc 1258 |||||| ||||||||||||||||||||||||||||| Sbjct: 96120 tgggaggaagattttgttgacaacccgaatgcaatc 96085 Score = 60.0 bits (30), Expect = 4e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 445 ctcagggacgcagttgaggaggctgaggattccatcgatgaacttgagta 494 ||||||||||| || ||||||||||||||| |||||||||| || ||||| Sbjct: 55905 ctcagggacgccgtcgaggaggctgaggatgccatcgatgagctcgagta 55954 Score = 58.0 bits (29), Expect = 2e-04 Identities = 29/29 (100%) Strand = Plus / Plus Query: 1230 aagattttgttgacaacccgaatgcaatc 1258 ||||||||||||||||||||||||||||| Sbjct: 28038 aagattttgttgacaacccgaatgcaatc 28066 Score = 58.0 bits (29), Expect = 2e-04 Identities = 48/53 (90%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 1409 tggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtta 1461 ||||||| ||||||||| ||||||| |||| |||||||||||||| ||||||| Sbjct: 95937 tggagaaaaaattgcaa-gaaactaagagggtgtcccttggtaacaaaggtta 95886 Score = 52.0 bits (26), Expect = 0.011 Identities = 41/46 (89%) Strand = Plus / Plus Query: 814 gagaaaatgagaagaaacaaatcattggatggctgaccaacacatc 859 |||||||||||||| |||| || |||||||||||||||| ||||| Sbjct: 27619 gagaaaatgagaaggaacatattgttggatggctgaccaatacatc 27664 Score = 50.1 bits (25), Expect = 0.042 Identities = 28/29 (96%) Strand = Plus / Plus Query: 1230 aagattttgttgacaacccgaatgcaatc 1258 |||||||| |||||||||||||||||||| Sbjct: 57065 aagatttttttgacaacccgaatgcaatc 57093 Score = 50.1 bits (25), Expect = 0.042 Identities = 46/53 (86%) Strand = Plus / Plus Query: 1409 tggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtta 1461 ||||||| |||| |||||||| || |||| |||||||||||||| ||||||| Sbjct: 57240 tggagaaaaaataacaaagaaattaagagggtgtcccttggtaacaaaggtta 57292 Score = 46.1 bits (23), Expect = 0.65 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1146 gttttggatgatgtctgggaaga 1168 ||||||||||||||||||||||| Sbjct: 22156 gttttggatgatgtctgggaaga 22134 Score = 44.1 bits (22), Expect = 2.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1147 ttttggatgatgtctgggaagataag 1172 |||| ||||||||||||||||||||| Sbjct: 27955 ttttagatgatgtctgggaagataag 27980
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 79.8 bits (40), Expect = 5e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 431 catggctgtggcgtctcagggacgcagttgaggaggctgaggattccatcgatgaacttg 490 |||||||||||| |||||||| ||||||||| ||||||||||| | |||||||| |||| Sbjct: 108786 catggctgtggcagctcagggatgcagttgagaaggctgaggatgctatcgatgagcttg 108845 Query: 491 agtactac 498 |||||||| Sbjct: 108846 agtactac 108853 Score = 63.9 bits (32), Expect = 3e-06 Identities = 35/36 (97%) Strand = Plus / Plus Query: 1223 tgggagcaagattttgttgacaacccgaatgcaatc 1258 |||||| ||||||||||||||||||||||||||||| Sbjct: 109570 tgggaggaagattttgttgacaacccgaatgcaatc 109605 Score = 58.0 bits (29), Expect = 2e-04 Identities = 48/53 (90%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 1409 tggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtta 1461 ||||||| ||||||||| ||||||| |||| |||||||||||||| ||||||| Sbjct: 109753 tggagaaaaaattgcaa-gaaactaagagggtgtcccttggtaacaaaggtta 109804
>ref|NM_001072929.1| Oryza sativa (japonica cultivar-group) Os12g0209900 (Os12g0209900) mRNA, complete cds Length = 1397 Score = 77.8 bits (39), Expect = 2e-10 Identities = 120/147 (81%) Strand = Plus / Minus Query: 1342 ttgagctcttcaatcatcatgtgttctctggtttgaactcacaagcctacatgcacttca 1401 |||| ||||||||||||||||| || ||| ||||||| | || | ||| | ||||||| Sbjct: 674 ttgaactcttcaatcatcatgtattttctagtttgaatttgcaggactatagccacttca 615 Query: 1402 aattaattggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtta 1461 || | ||||||||||||||||| |||||| ||||| ||||||||||||| ||||| | Sbjct: 614 aaaagactggagaacaaattgcaaggaaactgggaggatgtcccttggtaattaaggtca 555 Query: 1462 caagtggccatttgcgaggtaatatga 1488 | |||| ||||||| |||||| |||| Sbjct: 554 cctgtggacatttgcaaggtaacatga 528 Score = 75.8 bits (38), Expect = 7e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 916 ttggtcatggtggcatggggaagactgctttggctcagagcatatg 961 ||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 1097 ttggtcatggtggtatggggaagactactttggctcagagcatatg 1052 Score = 60.0 bits (30), Expect = 4e-05 Identities = 90/110 (81%) Strand = Plus / Minus Query: 1585 atcttcctacagagttgcagatgtgctttcgatattgtagcttgtttcccgtggaccatg 1644 ||||||| || ||||| ||||| |||||| | | ||||||||| ||||| | |||||| Sbjct: 431 atcttccaactgagttacagatttgctttaggttttgtagcttatttcctgaggaccaca 372 Query: 1645 aatttcgcaaggaagagttagtgaagatgtggattggttcaggactgatc 1694 |||||||||||||||| | ||| | |||||||| |||||||| ||||| Sbjct: 371 aatttcgcaaggaagatcttgtgcatatgtggatgtgttcaggattgatc 322
>dbj|AK060643.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G01, full insert sequence Length = 1397 Score = 77.8 bits (39), Expect = 2e-10 Identities = 120/147 (81%) Strand = Plus / Plus Query: 1342 ttgagctcttcaatcatcatgtgttctctggtttgaactcacaagcctacatgcacttca 1401 |||| ||||||||||||||||| || ||| ||||||| | || | ||| | ||||||| Sbjct: 724 ttgaactcttcaatcatcatgtattttctagtttgaatttgcaggactatagccacttca 783 Query: 1402 aattaattggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtta 1461 || | ||||||||||||||||| |||||| ||||| ||||||||||||| ||||| | Sbjct: 784 aaaagactggagaacaaattgcaaggaaactgggaggatgtcccttggtaattaaggtca 843 Query: 1462 caagtggccatttgcgaggtaatatga 1488 | |||| ||||||| |||||| |||| Sbjct: 844 cctgtggacatttgcaaggtaacatga 870 Score = 75.8 bits (38), Expect = 7e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 916 ttggtcatggtggcatggggaagactgctttggctcagagcatatg 961 ||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 301 ttggtcatggtggtatggggaagactactttggctcagagcatatg 346 Score = 60.0 bits (30), Expect = 4e-05 Identities = 90/110 (81%) Strand = Plus / Plus Query: 1585 atcttcctacagagttgcagatgtgctttcgatattgtagcttgtttcccgtggaccatg 1644 ||||||| || ||||| ||||| |||||| | | ||||||||| ||||| | |||||| Sbjct: 967 atcttccaactgagttacagatttgctttaggttttgtagcttatttcctgaggaccaca 1026 Query: 1645 aatttcgcaaggaagagttagtgaagatgtggattggttcaggactgatc 1694 |||||||||||||||| | ||| | |||||||| |||||||| ||||| Sbjct: 1027 aatttcgcaaggaagatcttgtgcatatgtggatgtgttcaggattgatc 1076
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 77.8 bits (39), Expect = 2e-10 Identities = 120/147 (81%) Strand = Plus / Minus Query: 1342 ttgagctcttcaatcatcatgtgttctctggtttgaactcacaagcctacatgcacttca 1401 |||| ||||||||||||||||| || ||| ||||||| | || | ||| | ||||||| Sbjct: 103750 ttgaactcttcaatcatcatgtattttctagtttgaatttgcaggactatagccacttca 103691 Query: 1402 aattaattggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtta 1461 || | ||||||||||||||||| |||||| ||||| ||||||||||||| ||||| | Sbjct: 103690 aaaagactggagaacaaattgcaaggaaactgggaggatgtcccttggtaattaaggtca 103631 Query: 1462 caagtggccatttgcgaggtaatatga 1488 | |||| ||||||| |||||| |||| Sbjct: 103630 cctgtggacatttgcaaggtaacatga 103604 Score = 75.8 bits (38), Expect = 7e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 916 ttggtcatggtggcatggggaagactgctttggctcagagcatatg 961 ||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 104173 ttggtcatggtggtatggggaagactactttggctcagagcatatg 104128 Score = 60.0 bits (30), Expect = 4e-05 Identities = 90/110 (81%) Strand = Plus / Minus Query: 1585 atcttcctacagagttgcagatgtgctttcgatattgtagcttgtttcccgtggaccatg 1644 ||||||| || ||||| ||||| |||||| | | ||||||||| ||||| | |||||| Sbjct: 103507 atcttccaactgagttacagatttgctttaggttttgtagcttatttcctgaggaccaca 103448 Query: 1645 aatttcgcaaggaagagttagtgaagatgtggattggttcaggactgatc 1694 |||||||||||||||| | ||| | |||||||| |||||||| ||||| Sbjct: 103447 aatttcgcaaggaagatcttgtgcatatgtggatgtgttcaggattgatc 103398
>ref|NM_001072905.1| Oryza sativa (japonica cultivar-group) Os12g0202900 (Os12g0202900) mRNA, complete cds Length = 3885 Score = 75.8 bits (38), Expect = 7e-10 Identities = 100/118 (84%), Gaps = 2/118 (1%) Strand = Plus / Plus Query: 1139 tttgctagttttggatgatgtctgggaagataagaaactacatgaatgggaaaggttatt 1198 |||||| ||||| |||||||| ||||||||||||||| || || ||||||||| ||| || Sbjct: 957 tttgcttgttttagatgatgtgtgggaagataagaaaatagataaatgggaaaagttgtt 1016 Query: 1199 tgctcctctgagg-cagctgaacactgggagcaagattttgttgacaacccgaatgca 1255 ||||||||| ||| ||| ||| | ||||||||| |||||||| ||||| || ||||| Sbjct: 1017 tgctcctctaaggacag-ggaagagtgggagcaaaattttgttaacaacacggatgca 1073 Score = 60.0 bits (30), Expect = 4e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 412 cagagcagcgccctggatgcatggctgtggcgtctcagggacgcagttgaggaggctgag 471 |||||||| || || ||||||||| | |||| |||||| |||||||||||||||||||| Sbjct: 226 cagagcagtgcactagatgcatggttatggcagctcaggcacgcagttgaggaggctgag 285 Query: 472 ga 473 || Sbjct: 286 ga 287 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 1414 aacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggttacaagtggccatt 1473 ||||||||| |||||||||||||| |||||| ||||||| |||||| ||||||||| Sbjct: 1229 aacaaattgtgaagaaactaggaggatgtcccctggtaacaaaggttgtcggtggccatt 1288 Query: 1474 tgcg 1477 |||| Sbjct: 1289 tgcg 1292 Score = 50.1 bits (25), Expect = 0.042 Identities = 34/37 (91%) Strand = Plus / Plus Query: 916 ttggtcatggtggcatggggaagactgctttggctca 952 ||||||| |||||||||||||||||| | |||||||| Sbjct: 734 ttggtcacggtggcatggggaagactacgttggctca 770 Score = 50.1 bits (25), Expect = 0.042 Identities = 37/41 (90%) Strand = Plus / Plus Query: 1318 aaggactagaagaagataagaatcttgagctcttcaatcat 1358 ||||||||||||||| | | |||||||||||||||| |||| Sbjct: 1133 aaggactagaagaaggtgaaaatcttgagctcttcagtcat 1173 Score = 48.1 bits (24), Expect = 0.16 Identities = 27/28 (96%) Strand = Plus / Plus Query: 1670 gatgtggattggttcaggactgatctca 1697 ||||||||| |||||||||||||||||| Sbjct: 1485 gatgtggataggttcaggactgatctca 1512 Score = 46.1 bits (23), Expect = 0.65 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1882 taatgcatgaattggcaaggactatgtctttaggtgaatgtgcaagaataa 1932 |||||||||||||||||||| | | |||| || |||||||||||||||| Sbjct: 1658 taatgcatgaattggcaaggtatgtatcttctggggaatgtgcaagaataa 1708
>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 105645 Score = 75.8 bits (38), Expect = 7e-10 Identities = 100/118 (84%), Gaps = 2/118 (1%) Strand = Plus / Minus Query: 1139 tttgctagttttggatgatgtctgggaagataagaaactacatgaatgggaaaggttatt 1198 |||||| ||||| |||||||| ||||||||||||||| || || ||||||||| ||| || Sbjct: 51645 tttgcttgttttagatgatgtgtgggaagataagaaaatagataaatgggaaaagttgtt 51586 Query: 1199 tgctcctctgagg-cagctgaacactgggagcaagattttgttgacaacccgaatgca 1255 ||||||||| ||| ||| ||| | ||||||||| |||||||| ||||| || ||||| Sbjct: 51585 tgctcctctaaggacag-ggaagagtgggagcaaaattttgttaacaacacggatgca 51529 Score = 60.0 bits (30), Expect = 4e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 412 cagagcagcgccctggatgcatggctgtggcgtctcagggacgcagttgaggaggctgag 471 |||||||| || || ||||||||| | |||| |||||| |||||||||||||||||||| Sbjct: 52376 cagagcagtgcactagatgcatggttatggcagctcaggcacgcagttgaggaggctgag 52317 Query: 472 ga 473 || Sbjct: 52316 ga 52315 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 1414 aacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggttacaagtggccatt 1473 ||||||||| |||||||||||||| |||||| ||||||| |||||| ||||||||| Sbjct: 51373 aacaaattgtgaagaaactaggaggatgtcccctggtaacaaaggttgtcggtggccatt 51314 Query: 1474 tgcg 1477 |||| Sbjct: 51313 tgcg 51310 Score = 50.1 bits (25), Expect = 0.042 Identities = 37/41 (90%) Strand = Plus / Minus Query: 1318 aaggactagaagaagataagaatcttgagctcttcaatcat 1358 ||||||||||||||| | | |||||||||||||||| |||| Sbjct: 51469 aaggactagaagaaggtgaaaatcttgagctcttcagtcat 51429 Score = 50.1 bits (25), Expect = 0.042 Identities = 34/37 (91%) Strand = Plus / Minus Query: 916 ttggtcatggtggcatggggaagactgctttggctca 952 ||||||| |||||||||||||||||| | |||||||| Sbjct: 51868 ttggtcacggtggcatggggaagactacgttggctca 51832 Score = 48.1 bits (24), Expect = 0.16 Identities = 27/28 (96%) Strand = Plus / Minus Query: 1670 gatgtggattggttcaggactgatctca 1697 ||||||||| |||||||||||||||||| Sbjct: 51117 gatgtggataggttcaggactgatctca 51090 Score = 46.1 bits (23), Expect = 0.65 Identities = 44/51 (86%) Strand = Plus / Minus Query: 1882 taatgcatgaattggcaaggactatgtctttaggtgaatgtgcaagaataa 1932 |||||||||||||||||||| | | |||| || |||||||||||||||| Sbjct: 50944 taatgcatgaattggcaaggtatgtatcttctggggaatgtgcaagaataa 50894
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 75.8 bits (38), Expect = 7e-10 Identities = 100/118 (84%), Gaps = 2/118 (1%) Strand = Plus / Plus Query: 1139 tttgctagttttggatgatgtctgggaagataagaaactacatgaatgggaaaggttatt 1198 |||||| ||||| |||||||| ||||||||||||||| || || ||||||||| ||| || Sbjct: 86230 tttgcttgttttagatgatgtgtgggaagataagaaaatagataaatgggaaaagttgtt 86289 Query: 1199 tgctcctctgagg-cagctgaacactgggagcaagattttgttgacaacccgaatgca 1255 ||||||||| ||| ||| ||| | ||||||||| |||||||| ||||| || ||||| Sbjct: 86290 tgctcctctaaggacag-ggaagagtgggagcaaaattttgttaacaacacggatgca 86346 Score = 60.0 bits (30), Expect = 4e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 412 cagagcagcgccctggatgcatggctgtggcgtctcagggacgcagttgaggaggctgag 471 |||||||| || || ||||||||| | |||| |||||| |||||||||||||||||||| Sbjct: 85499 cagagcagtgcactagatgcatggttatggcagctcaggcacgcagttgaggaggctgag 85558 Query: 472 ga 473 || Sbjct: 85559 ga 85560 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 1414 aacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggttacaagtggccatt 1473 ||||||||| |||||||||||||| |||||| ||||||| |||||| ||||||||| Sbjct: 86502 aacaaattgtgaagaaactaggaggatgtcccctggtaacaaaggttgtcggtggccatt 86561 Query: 1474 tgcg 1477 |||| Sbjct: 86562 tgcg 86565 Score = 50.1 bits (25), Expect = 0.042 Identities = 34/37 (91%) Strand = Plus / Plus Query: 916 ttggtcatggtggcatggggaagactgctttggctca 952 ||||||| |||||||||||||||||| | |||||||| Sbjct: 86007 ttggtcacggtggcatggggaagactacgttggctca 86043 Score = 50.1 bits (25), Expect = 0.042 Identities = 37/41 (90%) Strand = Plus / Plus Query: 1318 aaggactagaagaagataagaatcttgagctcttcaatcat 1358 ||||||||||||||| | | |||||||||||||||| |||| Sbjct: 86406 aaggactagaagaaggtgaaaatcttgagctcttcagtcat 86446 Score = 48.1 bits (24), Expect = 0.16 Identities = 27/28 (96%) Strand = Plus / Plus Query: 1670 gatgtggattggttcaggactgatctca 1697 ||||||||| |||||||||||||||||| Sbjct: 86758 gatgtggataggttcaggactgatctca 86785 Score = 46.1 bits (23), Expect = 0.65 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1882 taatgcatgaattggcaaggactatgtctttaggtgaatgtgcaagaataa 1932 |||||||||||||||||||| | | |||| || |||||||||||||||| Sbjct: 86931 taatgcatgaattggcaaggtatgtatcttctggggaatgtgcaagaataa 86981
>ref|NM_001072913.1| Oryza sativa (japonica cultivar-group) Os12g0204700 (Os12g0204700) mRNA, complete cds Length = 2125 Score = 73.8 bits (37), Expect = 3e-09 Identities = 58/65 (89%) Strand = Plus / Minus Query: 421 gccctggatgcatggctgtggcgtctcagggacgcagttgaggaggctgaggattccatc 480 ||||| |||||||||||||||| ||||| || ||||| ||||||||||||||| ||||| Sbjct: 1914 gccctagatgcatggctgtggcagctcagagatgcagtcgaggaggctgaggatgccatc 1855 Query: 481 gatga 485 ||||| Sbjct: 1854 gatga 1850 Score = 65.9 bits (33), Expect = 7e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 1408 ttggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtt 1460 |||||||| |||| |||||||||||| |||| |||||||||||||| |||||| Sbjct: 947 ttggagaagaaatcgcaaagaaactaagagggtgtcccttggtaactaaggtt 895 Score = 58.0 bits (29), Expect = 2e-04 Identities = 29/29 (100%) Strand = Plus / Minus Query: 1230 aagattttgttgacaacccgaatgcaatc 1258 ||||||||||||||||||||||||||||| Sbjct: 1122 aagattttgttgacaacccgaatgcaatc 1094 Score = 52.0 bits (26), Expect = 0.011 Identities = 41/46 (89%) Strand = Plus / Minus Query: 814 gagaaaatgagaagaaacaaatcattggatggctgaccaacacatc 859 |||||||||||||| |||| || |||||||||||||||| ||||| Sbjct: 1541 gagaaaatgagaaggaacatattgttggatggctgaccaatacatc 1496 Score = 44.1 bits (22), Expect = 2.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1147 ttttggatgatgtctgggaagataag 1172 |||| ||||||||||||||||||||| Sbjct: 1205 ttttagatgatgtctgggaagataag 1180
>ref|NM_001072912.1| Oryza sativa (japonica cultivar-group) Os12g0204800 (Os12g0204800) mRNA, complete cds Length = 1956 Score = 73.8 bits (37), Expect = 3e-09 Identities = 58/65 (89%) Strand = Plus / Plus Query: 421 gccctggatgcatggctgtggcgtctcagggacgcagttgaggaggctgaggattccatc 480 ||||| |||||||||||||||| ||||| || ||||| ||||||||||||||| ||||| Sbjct: 208 gccctagatgcatggctgtggcagctcagagatgcagtcgaggaggctgaggatgccatc 267 Query: 481 gatga 485 ||||| Sbjct: 268 gatga 272 Score = 65.9 bits (33), Expect = 7e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 1408 ttggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtt 1460 |||||||| |||| |||||||||||| |||| |||||||||||||| |||||| Sbjct: 1175 ttggagaagaaatcgcaaagaaactaagagggtgtcccttggtaactaaggtt 1227 Score = 58.0 bits (29), Expect = 2e-04 Identities = 29/29 (100%) Strand = Plus / Plus Query: 1230 aagattttgttgacaacccgaatgcaatc 1258 ||||||||||||||||||||||||||||| Sbjct: 1000 aagattttgttgacaacccgaatgcaatc 1028 Score = 52.0 bits (26), Expect = 0.011 Identities = 41/46 (89%) Strand = Plus / Plus Query: 814 gagaaaatgagaagaaacaaatcattggatggctgaccaacacatc 859 |||||||||||||| |||| || |||||||||||||||| ||||| Sbjct: 581 gagaaaatgagaaggaacatattgttggatggctgaccaatacatc 626 Score = 44.1 bits (22), Expect = 2.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1147 ttttggatgatgtctgggaagataag 1172 |||| ||||||||||||||||||||| Sbjct: 917 ttttagatgatgtctgggaagataag 942
>dbj|AK102485.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094M06, full insert sequence Length = 2127 Score = 73.8 bits (37), Expect = 3e-09 Identities = 58/65 (89%) Strand = Plus / Plus Query: 421 gccctggatgcatggctgtggcgtctcagggacgcagttgaggaggctgaggattccatc 480 ||||| |||||||||||||||| ||||| || ||||| ||||||||||||||| ||||| Sbjct: 214 gccctagatgcatggctgtggcagctcagagatgcagtcgaggaggctgaggatgccatc 273 Query: 481 gatga 485 ||||| Sbjct: 274 gatga 278 Score = 65.9 bits (33), Expect = 7e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 1408 ttggagaacaaattgcaaagaaactaggaggttgtcccttggtaaccaaggtt 1460 |||||||| |||| |||||||||||| |||| |||||||||||||| |||||| Sbjct: 1181 ttggagaagaaatcgcaaagaaactaagagggtgtcccttggtaactaaggtt 1233 Score = 58.0 bits (29), Expect = 2e-04 Identities = 29/29 (100%) Strand = Plus / Plus Query: 1230 aagattttgttgacaacccgaatgcaatc 1258 ||||||||||||||||||||||||||||| Sbjct: 1006 aagattttgttgacaacccgaatgcaatc 1034 Score = 52.0 bits (26), Expect = 0.011 Identities = 41/46 (89%) Strand = Plus / Plus Query: 814 gagaaaatgagaagaaacaaatcattggatggctgaccaacacatc 859 |||||||||||||| |||| || |||||||||||||||| ||||| Sbjct: 587 gagaaaatgagaaggaacatattgttggatggctgaccaatacatc 632 Score = 44.1 bits (22), Expect = 2.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1147 ttttggatgatgtctgggaagataag 1172 |||| ||||||||||||||||||||| Sbjct: 923 ttttagatgatgtctgggaagataag 948
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 67.9 bits (34), Expect = 2e-07 Identities = 55/62 (88%) Strand = Plus / Plus Query: 424 ctggatgcatggctgtggcgtctcagggacgcagttgaggaggctgaggattccatcgat 483 ||||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| Sbjct: 11342966 ctggatgcatggctgtggcaactcagggatgccgttgaggaagctgaggattcactcgat 11343025 Query: 484 ga 485 || Sbjct: 11343026 ga 11343027
>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1386G10 Length = 121827 Score = 67.9 bits (34), Expect = 2e-07 Identities = 55/62 (88%) Strand = Plus / Plus Query: 424 ctggatgcatggctgtggcgtctcagggacgcagttgaggaggctgaggattccatcgat 483 ||||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| Sbjct: 30675 ctggatgcatggctgtggcaactcagggatgccgttgaggaagctgaggattcactcgat 30734 Query: 484 ga 485 || Sbjct: 30735 ga 30736
>emb|AJ872209.1| Festuca glaucescens x Lolium multiflorum microsatellite DNA, clone B1-A9 Length = 674 Score = 63.9 bits (32), Expect = 3e-06 Identities = 77/92 (83%) Strand = Plus / Minus Query: 404 tcaggcagcagagcagcgccctggatgcatggctgtggcgtctcagggacgcagttgagg 463 ||||| |||||||||||||||||||||| ||||| |||| ||||||||| || |||| Sbjct: 342 tcagggagcagagcagcgccctggatgcgtggctctggcagctcagggacttggtcgagg 283 Query: 464 aggctgaggattccatcgatgaacttgagtac 495 || |||||| ||||||| || ||||||||| Sbjct: 282 cagcggaggatgccatcgacgagcttgagtac 251
>emb|CT025287.2| Xenopus tropicalis finished cDNA, clone TNeu015l10 Length = 1470 Score = 48.1 bits (24), Expect = 0.16 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1152 gatgatgtctgggaagataagaaa 1175 |||||||||||||||||||||||| Sbjct: 1421 gatgatgtctgggaagataagaaa 1444
>dbj|AP006668.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT16B20, TM0367, complete sequence Length = 112717 Score = 48.1 bits (24), Expect = 0.16 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1856 aaatgaatattatttaatgaatgg 1879 |||||||||||||||||||||||| Sbjct: 16314 aaatgaatattatttaatgaatgg 16291
>ref|NM_001072911.1| Oryza sativa (japonica cultivar-group) Os12g0204600 (Os12g0204600) mRNA, complete cds Length = 2324 Score = 46.1 bits (23), Expect = 0.65 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1146 gttttggatgatgtctgggaaga 1168 ||||||||||||||||||||||| Sbjct: 1022 gttttggatgatgtctgggaaga 1044
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 46.1 bits (23), Expect = 0.65 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1984 ttgctcaacttcacaatttttct 2006 ||||||||||||||||||||||| Sbjct: 3727850 ttgctcaacttcacaatttttct 3727828
>emb|CT573508.2| Medicago truncatula chromosome 5 clone mth2-29p15, COMPLETE SEQUENCE Length = 125647 Score = 46.1 bits (23), Expect = 0.65 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1137 tatttgctagttttggatgatgt 1159 ||||||||||||||||||||||| Sbjct: 37317 tatttgctagttttggatgatgt 37295
>gb|AC010067.7| Drosophila melanogaster 3L BAC RP98-10I10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179856 Score = 46.1 bits (23), Expect = 0.65 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1984 ttgctcaacttcacaatttttct 2006 ||||||||||||||||||||||| Sbjct: 67010 ttgctcaacttcacaatttttct 67032
>gb|AY093954.1| Triticum aestivum prohibitin protein Wph mRNA, complete cds Length = 997 Score = 46.1 bits (23), Expect = 0.65 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2072 tgaagctgcagaggatatagctt 2094 ||||||||||||||||||||||| Sbjct: 723 tgaagctgcagaggatatagctt 745
>emb|X14057.1|ROTRFVP2 Bovine rotavirus mRNA for RNA-binding protein VP2 Length = 2687 Score = 46.1 bits (23), Expect = 0.65 Identities = 23/23 (100%) Strand = Plus / Minus Query: 786 ttatcaaatgcaactgcatttat 808 ||||||||||||||||||||||| Sbjct: 2634 ttatcaaatgcaactgcatttat 2612
>emb|X52589.1|REBRVVP2 Bovine rotavirus RNA for virus protein 2 (VP2) Length = 2691 Score = 46.1 bits (23), Expect = 0.65 Identities = 23/23 (100%) Strand = Plus / Minus Query: 786 ttatcaaatgcaactgcatttat 808 ||||||||||||||||||||||| Sbjct: 2637 ttatcaaatgcaactgcatttat 2615
>emb|CR381673.8| Zebrafish DNA sequence from clone CH211-209J3 in linkage group 2, complete sequence Length = 209213 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1852 tgacaaatgaatattatttaat 1873 |||||||||||||||||||||| Sbjct: 192679 tgacaaatgaatattatttaat 192658
>gb|AC126917.1| Homo sapiens chromosome 5 clone RP11-467F22, complete sequence Length = 206737 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1977 ttatgcattgctcaacttcaca 1998 |||||||||||||||||||||| Sbjct: 44717 ttatgcattgctcaacttcaca 44738
>gb|AC023772.22| Homo sapiens chromosome 4, clone RP11-634F16, complete sequence Length = 191312 Score = 44.1 bits (22), Expect = 2.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 904 ttgtttcagtggttggtcatggtggc 929 |||||||||||||||| ||||||||| Sbjct: 78749 ttgtttcagtggttgggcatggtggc 78724
>gb|AC149085.6| Mus musculus BAC clone RP23-191I16 from chromosome 7, complete sequence Length = 208232 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 897 attcccattgtttcagtggttg 918 |||||||||||||||||||||| Sbjct: 177875 attcccattgtttcagtggttg 177854
>ref|XM_650612.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (24.t00046) partial mRNA Length = 3219 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1097 acttcaacaatatctcaaagaa 1118 |||||||||||||||||||||| Sbjct: 2602 acttcaacaatatctcaaagaa 2623
>dbj|AB012243.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIJ24 Length = 68697 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1997 caatttttctgttgagcacatc 2018 |||||||||||||||||||||| Sbjct: 22990 caatttttctgttgagcacatc 23011
>gb|AC023795.18| Homo sapiens 12 BAC RP11-242B24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161838 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 446 tcagggacgcagttgaggaggc 467 |||||||||||||||||||||| Sbjct: 11754 tcagggacgcagttgaggaggc 11775
>gb|AC104620.5| Homo sapiens BAC clone RP11-294O2 from 4, complete sequence Length = 155643 Score = 44.1 bits (22), Expect = 2.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 904 ttgtttcagtggttggtcatggtggc 929 |||||||||||||||| ||||||||| Sbjct: 112577 ttgtttcagtggttgggcatggtggc 112552
>emb|AL606747.13| Mouse DNA sequence from clone RP23-49O14 on chromosome 3, complete sequence Length = 108299 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 571 tttgttagatctgttattaagc 592 |||||||||||||||||||||| Sbjct: 93770 tttgttagatctgttattaagc 93749 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 493,677,895 Number of extensions: 27702159 Number of successful extensions: 136654 Number of sequences better than 10.0: 34 Number of HSP's gapped: 136650 Number of HSP's successfully gapped: 112 Length of query: 2649 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2626 Effective length of database: 18,503,978,556 Effective search space: 48591447688056 Effective search space used: 48591447688056 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
