ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf29c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC126600.6| Mus musculus chromosome 1, clone RP23-145J9, comp... 46 0.28
2gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 44 1.1
3gb|AC064836.7| Homo sapiens BAC clone RP11-686O6 from 2, complet... 44 1.1
4gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 42 4.4
5gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC... 42 4.4
6dbj|AK114003.1| Ciona intestinalis cDNA, clone:cicl021d05, full ... 42 4.4
7gb|AF078801.1|AF078801 Hordeum vulgare degenerate retrotransposo... 42 4.4

>gb|AC126600.6| Mus musculus chromosome 1, clone RP23-145J9, complete sequence
          Length = 219130
 Score = 46.1 bits (23), Expect = 0.28
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 654    aatggacatcagtggaacacatg 676
              |||||||||||||||||||||||
Sbjct: 169837 aatggacatcagtggaacacatg 169815



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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 236    gccgcccaacaggccatcgccc 257
              ||||||||||||||||||||||
Sbjct: 310914 gccgcccaacaggccatcgccc 310893



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>gb|AC064836.7| Homo sapiens BAC clone RP11-686O6 from 2, complete sequence
          Length = 154754

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 409   tggtcccctggtgcatggggct 430
             ||||||||||||||||||||||
Sbjct: 78422 tggtcccctggtgcatggggct 78443



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>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 1085  atgacgagttgatgtatatacttctcgtccctcgttg 1121
             ||||||||||| || |||||||||||  |||||||||
Sbjct: 66587 atgacgagttgttggatatacttctcacccctcgttg 66623



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>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13,
             complete sequence
          Length = 102842

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 1085  atgacgagttgatgtatatacttctcgtccctc 1117
             |||||||| |||||||||||||| ||| |||||
Sbjct: 66809 atgacgagatgatgtatatacttatcgcccctc 66841



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>dbj|AK114003.1| Ciona intestinalis cDNA, clone:cicl021d05, full insert sequence
          Length = 2290

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 769 tggacaggttcatcgggcggt 789
           |||||||||||||||||||||
Sbjct: 970 tggacaggttcatcgggcggt 990



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>gb|AF078801.1|AF078801 Hordeum vulgare degenerate retrotransposon cereba polyprotein
            pseudogene, partial sequence
          Length = 15230

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 1085 atgacgagttgatgtatatacttctcgtccctcgttg 1121
            ||||| || ||||||||||||||||||  ||||||||
Sbjct: 132  atgaccagatgatgtatatacttctcgctcctcgttg 96


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 155,826,295
Number of extensions: 7643648
Number of successful extensions: 130948
Number of sequences better than 10.0: 7
Number of HSP's gapped: 130948
Number of HSP's successfully gapped: 7
Length of query: 1170
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1147
Effective length of database: 18,503,978,556
Effective search space: 21224063403732
Effective search space used: 21224063403732
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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