ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf26h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8VZU2:SY132_ARATH Syntaxin-132 - Arabidopsis thaliana (Mouse-ea... 45 8e-04
2Q9SRV7:SY131_ARATH Putative syntaxin-131 - Arabidopsis thaliana ... 38 0.071
3Q9ZQZ8:SY123_ARATH Syntaxin-123 - Arabidopsis thaliana (Mouse-ea... 31 0.17
4Q9ZSD4:SY121_ARATH Syntaxin-121 - Arabidopsis thaliana (Mouse-ea... 30 1.6
5Q42374:SY111_ARATH Syntaxin-related protein KNOLLE - Arabidopsis... 33 2.3
6Q20024:STX1_CAEEL Putative syntaxin-1 - Caenorhabditis elegans 32 5.1
7P49997:RECF_AZOVI DNA replication and repair protein recF - Azot... 31 8.7

>Q8VZU2:SY132_ARATH Syntaxin-132 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 304
 Score = 44.7 bits (104), Expect = 8e-04
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = -2

Query: 1001 SKVSNATDHIQQGVGGLKKAKKLQKNTRKWM 909
            S+VS+A DH+Q G   L++AK LQKN+RKWM
Sbjct: 247  SQVSSAVDHVQSGNTALQRAKSLQKNSRKWM 277



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>Q9SRV7:SY131_ARATH Putative syntaxin-131 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 306

 Score = 38.1 bits (87), Expect = 0.071
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = -2

Query: 995 VSNATDHIQQGVGGLKKAKKLQKNTRKWM 909
           VS+A DH+Q G   L KA K QK++RKWM
Sbjct: 250 VSSAVDHVQSGNNQLTKAVKSQKSSRKWM 278



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>Q9ZQZ8:SY123_ARATH Syntaxin-123 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 305

 Score = 31.2 bits (69), Expect(2) = 0.17
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 1001 SKVSNATDHIQQGVGGLKKAKKLQKNTRKW 912
            S VS A+  + +G   L  AK LQ+N RKW
Sbjct: 249  SNVSKASSFVMRGTDQLHGAKVLQRNNRKW 278



 Score = 24.6 bits (52), Expect(2) = 0.17
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -3

Query: 1126 LSESQGDMMNDIDTHVRR 1073
            L E+QG+M+NDI+++V +
Sbjct: 236  LVEAQGNMLNDIESNVSK 253



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>Q9ZSD4:SY121_ARATH Syntaxin-121 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 346

 Score = 30.0 bits (66), Expect(2) = 1.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 1001 SKVSNATDHIQQGVGGLKKAKKLQKNTRKW 912
            S V  A+  I+ G   L+ A+  QKNTRKW
Sbjct: 257  SHVGRASSFIRGGTDQLQTARVYQKNTRKW 286



 Score = 22.3 bits (46), Expect(2) = 1.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 1126 LSESQGDMMNDIDTHVRR 1073
            L E QG  ++DI++HV R
Sbjct: 244  LVEHQGAQLDDIESHVGR 261



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>Q42374:SY111_ARATH Syntaxin-related protein KNOLLE - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 310

 Score = 33.1 bits (74), Expect = 2.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 995 VSNATDHIQQGVGGLKKAKKLQKNTRKWM 909
           V NA+ ++  G   LK AK  Q+N+RKWM
Sbjct: 257 VINASHYVADGANELKTAKSHQRNSRKWM 285



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>Q20024:STX1_CAEEL Putative syntaxin-1 - Caenorhabditis elegans|
          Length = 306

 Score = 32.0 bits (71), Expect = 5.1
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 1019 VMPSWFSKVSNATDHIQQGVGGLKKAKKLQKNTRKWMSC 903
            ++ S  + V NAT++ +Q  G +++A+ LQK  RK   C
Sbjct: 241  MVDSIVNSVENATEYAKQARGNVEEARNLQKRARKMKVC 279



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>P49997:RECF_AZOVI DNA replication and repair protein recF - Azotobacter vinelandii|
          Length = 364

 Score = 31.2 bits (69), Expect = 8.7
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 294 RTPAASSPATSGG*LRGNQRTSGPCGLPSARTCWTGSTSSPWRSSTTKATTINPEMNEHQ 473
           R P+A +        R NQ  SGP G       W  ST S W+ S+ ++  ++P +   Q
Sbjct: 21  RCPSAVTVTRCVTSARVNQYISGPNGSGKRPAYWRRSTCSAWQLSSFRSQRLSPVIQHEQ 80


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 201,000,997
Number of extensions: 4300076
Number of successful extensions: 10903
Number of sequences better than 10.0: 7
Number of HSP's gapped: 10898
Number of HSP's successfully gapped: 9
Length of query: 392
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 277
Effective length of database: 69,142,514
Effective search space: 19152476378
Effective search space used: 19152476378
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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