ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf32e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q01636:LAMBV_CHICK Laminin subunit beta-1 variant - Gallus gallu... 35 0.39
2O49146:IP22_CAPAN Wound-induced proteinase inhibitor 2 precursor... 32 1.9
3P12806:PRT1_PICAN Putative PRT1 protein - Pichia angusta (Yeast)... 32 2.5
4P04706:GLU2_MAIZE Glutelin-2 precursor - Zea mays (Maize) 32 2.5
5Q5T749:KPRP_HUMAN Keratinocyte proline-rich protein - Homo sapie... 32 3.3
6Q62267:SPR1B_MOUSE Cornifin-B - Mus musculus (Mouse) 30 9.6

>Q01636:LAMBV_CHICK Laminin subunit beta-1 variant - Gallus gallus (Chicken)|
          Length = 198
 Score = 34.7 bits (78), Expect = 0.39
 Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 9   PDP--EHPDP-CLFPIHPRSRCPRPQAPATPALCPR 107
           PDP   HPDP    P H R R P P AP+ P L PR
Sbjct: 25  PDPTRRHPDPESRAPPHARPRSPPPPAPSPPPLPPR 60



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>O49146:IP22_CAPAN Wound-induced proteinase inhibitor 2 precursor - Capsicum annuum|
           (Bell pepper)
          Length = 204

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +3

Query: 12  DPEHPDPCLFPIHPR---SRCPRPQAPATPALC 101
           DP +P PC     PR   S+CPR +A A   +C
Sbjct: 122 DPNNPKPCTLNCDPRIFYSKCPRSEASAEQPIC 154



 Score = 30.0 bits (66), Expect = 9.6
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +3

Query: 12  DPEHPDPCLFPIHPR---SRCPRPQAPATPALC 101
           DP +P PC     PR   S+CPR +  A   +C
Sbjct: 64  DPNNPKPCTLNCDPRIFYSKCPRSEGNAENRIC 96



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>P12806:PRT1_PICAN Putative PRT1 protein - Pichia angusta (Yeast) (Hansenula|
           polymorpha)
          Length = 220

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 267 YWSEKEDEKKEGLGMSGYWVAAAFKYLPHGTSLYS 371
           YW +K  + +E +    +W +A+ K+ P GT L+S
Sbjct: 172 YWYKKNIQPEEVIEPRAHWTSASMKFSPKGTYLFS 206



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>P04706:GLU2_MAIZE Glutelin-2 precursor - Zea mays (Maize)|
          Length = 223

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 3   HAPDPEH--PDPCLFPIHPRSRCPRPQAPATPALCP 104
           H P P H  P PC +P  P    PRPQ    P  CP
Sbjct: 71  HVPPPVHLPPPPCHYPTQP----PRPQPHPQPHPCP 102



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>Q5T749:KPRP_HUMAN Keratinocyte proline-rich protein - Homo sapiens (Human)|
          Length = 579

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 24  PDPCLFPIHPRSRCPRPQAPATPALCP 104
           P PCL P      CPRP+    PA CP
Sbjct: 460 PRPCLQPCEHPEPCPRPEPIPLPAPCP 486



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>Q62267:SPR1B_MOUSE Cornifin-B - Mus musculus (Mouse)|
          Length = 153

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 6   APDPEHP---DPCLFPIHPRSRCPRPQAPATPALCPRALVSVFVPEK 137
           AP+P HP   +PCL       + P P  P  P  CP  +  +   +K
Sbjct: 109 APEPCHPKVPEPCL------PKAPEPCQPIVPEPCPSTVTPILAQQK 149


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 124,770,389
Number of extensions: 2734466
Number of successful extensions: 6483
Number of sequences better than 10.0: 6
Number of HSP's gapped: 6468
Number of HSP's successfully gapped: 7
Length of query: 245
Length of database: 100,686,439
Length adjustment: 110
Effective length of query: 135
Effective length of database: 70,513,989
Effective search space: 9519388515
Effective search space used: 9519388515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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