ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf32e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CT025691.7| Zebrafish DNA sequence from clone CH211-206I4 in... 44 0.70
2gb|AF520815.1| Danio rerio connexin 48.5 (cx48.5) gene, complete... 44 0.70
3gb|AC103877.2| Homo sapiens chromosome 8, clone CTD-2325A12, com... 44 0.70
4gb|AC021242.10| Homo sapiens chromosome 8, clone RP11-375N15, co... 44 0.70
5ref|XM_703540.1| PREDICTED: Danio rerio similar to connexin 43, ... 44 0.70
6ref|XM_703539.1| PREDICTED: Danio rerio similar to connexin 43, ... 44 0.70
7ref|XM_703538.1| PREDICTED: Danio rerio similar to connexin 43, ... 44 0.70
8ref|XM_703537.1| PREDICTED: Danio rerio similar to connexin 43, ... 44 0.70
9ref|XM_681898.1| PREDICTED: Danio rerio similar to connexin 43, ... 44 0.70
10gb|BC049297.1| Danio rerio connexin 43, mRNA (cDNA clone MGC:552... 44 0.70
11gb|AY313942.1| Danio rerio connexin 43 gene, complete cds 44 0.70
12gb|AY340236.1| Danio rerio Cx32.2 and connexin 43 (gja1) genes, ... 44 0.70
13emb|CR352322.5| Zebrafish DNA sequence from clone DKEY-261A18 in... 44 0.70
14emb|BX296546.6| Zebrafish DNA sequence from clone CH211-234P1 in... 44 0.70
15ref|NM_131038.1| Danio rerio connexin 43 (cx43), mRNA >gi|292138... 44 0.70
16dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
17emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chro... 42 2.8
18gb|AY008286.1| Cyprinus carpio connexin 43 mRNA, complete cds 42 2.8
19dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
20emb|Y14338.1|PPAMOA Pseudomonas putida amoA gene 42 2.8 
>emb|CT025691.7| Zebrafish DNA sequence from clone CH211-206I4 in linkage group 4,
             complete sequence
          Length = 68685
 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 383   aatgaggaggataaatcaagtg 404
             ||||||||||||||||||||||
Sbjct: 63978 aatgaggaggataaatcaagtg 63999
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>gb|AF520815.1| Danio rerio connexin 48.5 (cx48.5) gene, complete cds
          Length = 1430

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 483 gatgatctgaagcacccagaag 504
           ||||||||||||||||||||||
Sbjct: 289 gatgatctgaagcacccagaag 268
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>gb|AC103877.2| Homo sapiens chromosome 8, clone CTD-2325A12, complete sequence
          Length = 97348

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 145   aagatgaatttacaaccttgaa 166
             ||||||||||||||||||||||
Sbjct: 32418 aagatgaatttacaaccttgaa 32397
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>gb|AC021242.10| Homo sapiens chromosome 8, clone RP11-375N15, complete sequence
          Length = 196152

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 145    aagatgaatttacaaccttgaa 166
              ||||||||||||||||||||||
Sbjct: 189267 aagatgaatttacaaccttgaa 189246
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>ref|XM_703540.1| PREDICTED: Danio rerio similar to connexin 43, transcript variant 5
           (LOC564569), mRNA
          Length = 2807

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 483 gatgatctgaagcacccagaag 504
           ||||||||||||||||||||||
Sbjct: 311 gatgatctgaagcacccagaag 290
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>ref|XM_703539.1| PREDICTED: Danio rerio similar to connexin 43, transcript variant 4
           (LOC564569), mRNA
          Length = 2763

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 483 gatgatctgaagcacccagaag 504
           ||||||||||||||||||||||
Sbjct: 348 gatgatctgaagcacccagaag 327
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>ref|XM_703538.1| PREDICTED: Danio rerio similar to connexin 43, transcript variant 3
           (LOC564569), mRNA
          Length = 2790

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 483 gatgatctgaagcacccagaag 504
           ||||||||||||||||||||||
Sbjct: 348 gatgatctgaagcacccagaag 327
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>ref|XM_703537.1| PREDICTED: Danio rerio similar to connexin 43, transcript variant 2
           (LOC564569), mRNA
          Length = 2658

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 483 gatgatctgaagcacccagaag 504
           ||||||||||||||||||||||
Sbjct: 249 gatgatctgaagcacccagaag 228
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>ref|XM_681898.1| PREDICTED: Danio rerio similar to connexin 43, transcript variant 1
           (LOC564569), mRNA
          Length = 2875

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 483 gatgatctgaagcacccagaag 504
           ||||||||||||||||||||||
Sbjct: 379 gatgatctgaagcacccagaag 358
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>gb|BC049297.1| Danio rerio connexin 43, mRNA (cDNA clone MGC:55225 IMAGE:5915503),
           complete cds
          Length = 2821

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 483 gatgatctgaagcacccagaag 504
           ||||||||||||||||||||||
Sbjct: 319 gatgatctgaagcacccagaag 298
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>gb|AY313942.1| Danio rerio connexin 43 gene, complete cds
          Length = 6771

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 483  gatgatctgaagcacccagaag 504
            ||||||||||||||||||||||
Sbjct: 5516 gatgatctgaagcacccagaag 5495
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>gb|AY340236.1| Danio rerio Cx32.2 and connexin 43 (gja1) genes, complete cds
          Length = 12964

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 483  gatgatctgaagcacccagaag 504
            ||||||||||||||||||||||
Sbjct: 9885 gatgatctgaagcacccagaag 9864
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>emb|CR352322.5| Zebrafish DNA sequence from clone DKEY-261A18 in linkage group 20,
             complete sequence
          Length = 59134

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 483   gatgatctgaagcacccagaag 504
             ||||||||||||||||||||||
Sbjct: 41294 gatgatctgaagcacccagaag 41273
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>emb|BX296546.6| Zebrafish DNA sequence from clone CH211-234P1 in linkage group 4,
              complete sequence
          Length = 174235

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 383    aatgaggaggataaatcaagtg 404
              ||||||||||||||||||||||
Sbjct: 144909 aatgaggaggataaatcaagtg 144930
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>ref|NM_131038.1| Danio rerio connexin 43 (cx43), mRNA
 gb|AF035481.1|AF035481 Danio rerio connexin 43 (Cx43) mRNA, complete cds
          Length = 2873

 Score = 44.1 bits (22), Expect = 0.70
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 483 gatgatctgaagcacccagaag 504
           ||||||||||||||||||||||
Sbjct: 368 gatgatctgaagcacccagaag 347
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 658      atggatgatgtattataattc 678
                |||||||||||||||||||||
Sbjct: 16215708 atggatgatgtattataattc 16215728
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>emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chromosome 9 Contains
              pseudogene similar to part of a novel gene (KIAA1688), a
              solute carrier family 25 (mitochondrial carrier; adenine
              nucleotide translocator), member 6 (SLC25A6) (ANT3)
              pseudogene and a CpG island, complete sequence
          Length = 169550

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 139    atttaaaagatgaatttacaa 159
              |||||||||||||||||||||
Sbjct: 107180 atttaaaagatgaatttacaa 107160
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>gb|AY008286.1| Cyprinus carpio connexin 43 mRNA, complete cds
          Length = 1143

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 483 gatgatctgaagcacccagaa 503
           |||||||||||||||||||||
Sbjct: 249 gatgatctgaagcacccagaa 229
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>dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:B1104G07
          Length = 119643

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 658  atggatgatgtattataattc 678
            |||||||||||||||||||||
Sbjct: 5886 atggatgatgtattataattc 5906
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>emb|Y14338.1|PPAMOA Pseudomonas putida amoA gene
          Length = 1783

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 328  cggcggccttcaagtacctgc 348
            |||||||||||||||||||||
Sbjct: 1211 cggcggccttcaagtacctgc 1231


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 134,621,992
Number of extensions: 7116232
Number of successful extensions: 132496
Number of sequences better than 10.0: 20
Number of HSP's gapped: 132496
Number of HSP's successfully gapped: 20
Length of query: 735
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 713
Effective length of database: 18,508,616,841
Effective search space: 13196643807633
Effective search space used: 13196643807633
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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