| Clone Name | FLbaf35g17 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ251052.1|AFA251052 Avena fatua mRNA for VIP3 protein (vip3 gene) Length = 762 Score = 464 bits (234), Expect = e-127 Identities = 348/386 (90%) Strand = Plus / Plus Query: 93 cggagatgcagcagggcgatggcacagaggcgcaggtgacgtgggatgaccagcagaaca 152 ||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||| Sbjct: 54 cggagatgcagcagggcgacggcacggaggcgcaggtgacatgggaggaccagcagaaca 113 Query: 153 tcaaccggttcggccgcctcaacaaccgcctccacgagctcgccgacgagatcaggctcg 212 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | Sbjct: 114 tcaaccggttcggccgcctcaacaaccgcttccacgagctcaccgacgagatcaggcttg 173 Query: 213 ccaaggaagcaaatgaaaaccttgaggatgcggggaatgaactcatcttgtctgatgaag 272 ||||||||||||||||||||||||||||||| |||||||| || ||| ||| |||||| | Sbjct: 174 ccaaggaagcaaatgaaaaccttgaggatgctgggaatgagcttatcctgtgtgatgagg 233 Query: 273 atgtggtgcgtttccaaattggggaagtgtttgcccacatgccagtggacgatgtggaaa 332 | |||||||||||||| ||||| || |||||||||||||||||| |||| || |||||| Sbjct: 234 acgtggtgcgtttccagattggagaggtgtttgcccacatgccaatggatgacgtggaag 293 Query: 333 ctaggctagagcagatgaaagaggatgcggctatgaagttagagaagctggaggaagaga 392 ||||||| |||||||||||||| ||||| |||| |||| | |||| ||||||||| |||| Sbjct: 294 ctaggctggagcagatgaaagaagatgcagctaagaagctggagaggctggaggaggaga 353 Query: 393 aggaatccatccttgcccagatggccgaactgaagaagatcctctacgggaaatttggag 452 ||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| | Sbjct: 354 aggaatccatcctcgcccagatggccgagctgaagaagatcctctacgggaagtttaagg 413 Query: 453 aggccatcaacctggaggaagattga 478 | ||||||||| ||||||| |||||| Sbjct: 414 atgccatcaacttggaggaggattga 439 Score = 48.1 bits (24), Expect = 0.046 Identities = 42/48 (87%) Strand = Plus / Plus Query: 525 ctgttcttgttcaggtgctttgttcttctcgctacattgtttctcgtg 572 ||||||| ||||||||||||| |||| || |||||||||||||||| Sbjct: 485 ctgttctacttcaggtgctttgctctttccgatacattgtttctcgtg 532
>ref|NM_001057244.1| Oryza sativa (japonica cultivar-group) Os03g0628900 (Os03g0628900) mRNA, complete cds Length = 792 Score = 428 bits (216), Expect = e-116 Identities = 357/404 (88%) Strand = Plus / Plus Query: 82 ccgaagggaaccggagatgcagcagggcgatggcacagaggcgcaggtgacgtgggatga 141 ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| || Sbjct: 96 ccgaagggaaccggagatgcagcagggggacggcacggaggcgcaggtgacgtgggagga 155 Query: 142 ccagcagaacatcaaccggttcggccgcctcaacaaccgcctccacgagctcgccgacga 201 |||||||||||||||||| || |||||||||||||||||||||||||||||| |||||| Sbjct: 156 ccagcagaacatcaaccgctttggccgcctcaacaaccgcctccacgagctccacgacga 215 Query: 202 gatcaggctcgccaaggaagcaaatgaaaaccttgaggatgcggggaatgaactcatctt 261 |||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||||| | Sbjct: 216 aatcaagctcgccaaggaagcaaatgagaaccttgatgatgctgggaatgaactcatcct 275 Query: 262 gtctgatgaagatgtggtgcgtttccaaattggggaagtgtttgcccacatgccagtgga 321 ||| || ||||| |||||||| ||||||||||| ||||||||||||||||||||| ||| Sbjct: 276 gtcagacgaagacgtggtgcggttccaaattggagaagtgtttgcccacatgccaaggga 335 Query: 322 cgatgtggaaactaggctagagcagatgaaagaggatgcggctatgaagttagagaagct 381 |||||||| || ||||| |||||||||||||||||||| |||| |||||| |||| ||| Sbjct: 336 tgatgtggagacaaggctggagcagatgaaagaggatgcagctaagaagttggagaggct 395 Query: 382 ggaggaagagaaggaatccatccttgcccagatggccgaactgaagaagatcctctacgg 441 |||| | ||||||||||||||| | |||||||||| |||||||||||||| || ||||| Sbjct: 396 ggagcaggagaaggaatccatcgtctcccagatggctgaactgaagaagatactgtacgg 455 Query: 442 gaaatttggagaggccatcaacctggaggaagattgatgtcgag 485 || || || |||||||||||||| ||||||| || ||||| Sbjct: 456 aaagttcaaggacgccatcaacctggaagaagattaatatcgag 499
>dbj|AK103619.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133L23, full insert sequence Length = 793 Score = 420 bits (212), Expect = e-114 Identities = 356/404 (88%) Strand = Plus / Plus Query: 82 ccgaagggaaccggagatgcagcagggcgatggcacagaggcgcaggtgacgtgggatga 141 ||||||||||||||||||||||||||| || | ||| |||||||||||||||||||| || Sbjct: 97 ccgaagggaaccggagatgcagcagggggacgtcacggaggcgcaggtgacgtgggagga 156 Query: 142 ccagcagaacatcaaccggttcggccgcctcaacaaccgcctccacgagctcgccgacga 201 |||||||||||||||||| || |||||||||||||||||||||||||||||| |||||| Sbjct: 157 ccagcagaacatcaaccgctttggccgcctcaacaaccgcctccacgagctccacgacga 216 Query: 202 gatcaggctcgccaaggaagcaaatgaaaaccttgaggatgcggggaatgaactcatctt 261 |||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||||| | Sbjct: 217 aatcaagctcgccaaggaagcaaatgagaaccttgatgatgctgggaatgaactcatcct 276 Query: 262 gtctgatgaagatgtggtgcgtttccaaattggggaagtgtttgcccacatgccagtgga 321 ||| || ||||| |||||||| ||||||||||| ||||||||||||||||||||| ||| Sbjct: 277 gtcagacgaagacgtggtgcggttccaaattggagaagtgtttgcccacatgccaaggga 336 Query: 322 cgatgtggaaactaggctagagcagatgaaagaggatgcggctatgaagttagagaagct 381 |||||||| || ||||| |||||||||||||||||||| |||| |||||| |||| ||| Sbjct: 337 tgatgtggagacaaggctggagcagatgaaagaggatgcagctaagaagttggagaggct 396 Query: 382 ggaggaagagaaggaatccatccttgcccagatggccgaactgaagaagatcctctacgg 441 |||| | ||||||||||||||| | |||||||||| |||||||||||||| || ||||| Sbjct: 397 ggagcaggagaaggaatccatcgtctcccagatggctgaactgaagaagatactgtacgg 456 Query: 442 gaaatttggagaggccatcaacctggaggaagattgatgtcgag 485 || || || |||||||||||||| ||||||| || ||||| Sbjct: 457 aaagttcaaggacgccatcaacctggaagaagattaatatcgag 500
>gb|DQ245584.1| Zea mays clone 17808 mRNA sequence Length = 822 Score = 396 bits (200), Expect = e-107 Identities = 341/388 (87%) Strand = Plus / Plus Query: 89 gaaccggagatgcagcagggcgatggcacagaggcgcaggtgacgtgggatgaccagcag 148 ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| Sbjct: 213 gaaccggagatgcagcagggcgacggcacggaggcgcaggtgacgtgggaggaccagcag 272 Query: 149 aacatcaaccggttcggccgcctcaacaaccgcctccacgagctcgccgacgagatcagg 208 ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| | Sbjct: 273 aacatcaaccgcttcggtcgcctcaacaaccgcctccacgagctccaggacgagatcaag 332 Query: 209 ctcgccaaggaagcaaatgaaaaccttgaggatgcggggaatgaactcatcttgtctgat 268 ||||| ||||| | ||||| |||||||| ||||| |||||||||||||||||||| ||| Sbjct: 333 ctcgcgaaggagacgaatgagaaccttgatgatgctgggaatgaactcatcttgtcggat 392 Query: 269 gaagatgtggtgcgtttccaaattggggaagtgtttgcccacatgccagtggacgatgtg 328 ||||| || || || ||||||||||||||||||||||| ||||||||| ||| || || Sbjct: 393 gaagacgttgtacgcttccaaattggggaagtgtttgctcacatgccaagggatgacgtc 452 Query: 329 gaaactaggctagagcagatgaaagaggatgcggctatgaagttagagaagctggaggaa 388 || |||||||| ||||||||||||||||||||||||| |||| | |||| | | ||||| Sbjct: 453 gagactaggctggagcagatgaaagaggatgcggctaagaagctggagaggttagaggag 512 Query: 389 gagaaggaatccatccttgcccagatggccgaactgaagaagatcctctacgggaaattt 448 || |||||||||||||| |||||||||||||| ||||||||||| || |||||||| || Sbjct: 513 gaaaaggaatccatcctggcccagatggccgagctgaagaagatactgtacgggaagttc 572 Query: 449 ggagaggccatcaacctggaggaagatt 476 || |||||||||||||||||||||| Sbjct: 573 aaggatgccatcaacctggaggaagatt 600
>gb|BT017935.1| Zea mays clone EL01N0520E08.c mRNA sequence Length = 743 Score = 396 bits (200), Expect = e-107 Identities = 341/388 (87%) Strand = Plus / Plus Query: 89 gaaccggagatgcagcagggcgatggcacagaggcgcaggtgacgtgggatgaccagcag 148 ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| Sbjct: 165 gaaccggagatgcagcagggcgacggcacggaggcgcaggtgacgtgggaggaccagcag 224 Query: 149 aacatcaaccggttcggccgcctcaacaaccgcctccacgagctcgccgacgagatcagg 208 ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| | Sbjct: 225 aacatcaaccgcttcggtcgcctcaacaaccgcctccacgagctccaggacgagatcaag 284 Query: 209 ctcgccaaggaagcaaatgaaaaccttgaggatgcggggaatgaactcatcttgtctgat 268 ||||| ||||| | ||||| |||||||| ||||| |||||||||||||||||||| ||| Sbjct: 285 ctcgcgaaggagacgaatgagaaccttgatgatgctgggaatgaactcatcttgtcggat 344 Query: 269 gaagatgtggtgcgtttccaaattggggaagtgtttgcccacatgccagtggacgatgtg 328 ||||| || || || ||||||||||||||||||||||| ||||||||| ||| || || Sbjct: 345 gaagacgttgtacgcttccaaattggggaagtgtttgctcacatgccaagggatgacgtc 404 Query: 329 gaaactaggctagagcagatgaaagaggatgcggctatgaagttagagaagctggaggaa 388 || |||||||| ||||||||||||||||||||||||| |||| | |||| | | ||||| Sbjct: 405 gagactaggctggagcagatgaaagaggatgcggctaagaagctggagaggttagaggag 464 Query: 389 gagaaggaatccatccttgcccagatggccgaactgaagaagatcctctacgggaaattt 448 || |||||||||||||| |||||||||||||| ||||||||||| || |||||||| || Sbjct: 465 gaaaaggaatccatcctggcccagatggccgagctgaagaagatactgtacgggaagttc 524 Query: 449 ggagaggccatcaacctggaggaagatt 476 || |||||||||||||||||||||| Sbjct: 525 aaggatgccatcaacctggaggaagatt 552
>emb|AJ310146.1|ZMA310146 Zea mays mRNA for VIP3 protein Length = 735 Score = 396 bits (200), Expect = e-107 Identities = 341/388 (87%) Strand = Plus / Plus Query: 89 gaaccggagatgcagcagggcgatggcacagaggcgcaggtgacgtgggatgaccagcag 148 ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| Sbjct: 152 gaaccggagatgcagcagggcgacggcacggaggcgcaggtgacgtgggaggaccagcag 211 Query: 149 aacatcaaccggttcggccgcctcaacaaccgcctccacgagctcgccgacgagatcagg 208 ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| | Sbjct: 212 aacatcaaccgcttcggtcgcctcaacaaccgcctccacgagctccaggacgagatcaag 271 Query: 209 ctcgccaaggaagcaaatgaaaaccttgaggatgcggggaatgaactcatcttgtctgat 268 ||||| ||||| | ||||| |||||||| ||||| |||||||||||||||||||| ||| Sbjct: 272 ctcgcgaaggagacgaatgagaaccttgatgatgctgggaatgaactcatcttgtcggat 331 Query: 269 gaagatgtggtgcgtttccaaattggggaagtgtttgcccacatgccagtggacgatgtg 328 ||||| || || || ||||||||||||||||||||||| ||||||||| ||| || || Sbjct: 332 gaagacgttgtacgcttccaaattggggaagtgtttgctcacatgccaagggatgacgtc 391 Query: 329 gaaactaggctagagcagatgaaagaggatgcggctatgaagttagagaagctggaggaa 388 || |||||||| ||||||||||||||||||||||||| |||| | |||| | | ||||| Sbjct: 392 gagactaggctggagcagatgaaagaggatgcggctaagaagctggagaggttagaggag 451 Query: 389 gagaaggaatccatccttgcccagatggccgaactgaagaagatcctctacgggaaattt 448 || |||||||||||||| |||||||||||||| ||||||||||| || |||||||| || Sbjct: 452 gaaaaggaatccatcctggcccagatggccgagctgaagaagatactgtacgggaagttc 511 Query: 449 ggagaggccatcaacctggaggaagatt 476 || |||||||||||||||||||||| Sbjct: 512 aaggatgccatcaacctggaggaagatt 539
>gb|BT017822.1| Zea mays clone EL01N0508B09.c mRNA sequence Length = 967 Score = 357 bits (180), Expect = 4e-95 Identities = 336/388 (86%) Strand = Plus / Plus Query: 89 gaaccggagatgcagcagggcgatggcacagaggcgcaggtgacgtgggatgaccagcag 148 ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| Sbjct: 177 gaaccggagatgcagcagggcgacagcacggaggcgcaggtgacgtgggaggaccagcag 236 Query: 149 aacatcaaccggttcggccgcctcaacaaccgcctccacgagctcgccgacgagatcagg 208 ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| Sbjct: 237 aacatcaaccgcttcggtcgcctcaacaaccgcctccacgagctccaggacgagatcaaa 296 Query: 209 ctcgccaaggaagcaaatgaaaaccttgaggatgcggggaatgaactcatcttgtctgat 268 ||||| |||||| | || || |||||||| ||||| ||||| ||||||||| |||| || Sbjct: 297 ctcgcgaaggaaacgaacgagaaccttgacgatgctgggaacgaactcatcctgtcggac 356 Query: 269 gaagatgtggtgcgtttccaaattggggaagtgtttgcccacatgccagtggacgatgtg 328 |||||||| ||||| ||||| || ||||| |||||||| |||||||| |||||| || Sbjct: 357 gaagatgtcgtgcgcttccagatcggggaggtgtttgctcacatgccgagggacgacgtc 416 Query: 329 gaaactaggctagagcagatgaaagaggatgcggctatgaagttagagaagctggaggaa 388 || |||||||| ||||||||||||||||||||||||| |||| | |||| ||| ||||| Sbjct: 417 gagactaggctggagcagatgaaagaggatgcggctaagaagctggagaggctagaggag 476 Query: 389 gagaaggaatccatccttgcccagatggccgaactgaagaagatcctctacgggaaattt 448 |||||||||||| |||| |||||||||||||| ||||||||||| || |||||||| || Sbjct: 477 gagaaggaatccgtcctcgcccagatggccgagctgaagaagatactgtacgggaagttc 536 Query: 449 ggagaggccatcaacctggaggaagatt 476 || |||||||||||||||||||||| Sbjct: 537 aaggacgccatcaacctggaggaagatt 564
>gb|AY110513.1| Zea mays CL5714_1 mRNA sequence Length = 698 Score = 321 bits (162), Expect = 2e-84 Identities = 252/282 (89%) Strand = Plus / Plus Query: 89 gaaccggagatgcagcagggcgatggcacagaggcgcaggtgacgtgggatgaccagcag 148 ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| Sbjct: 116 gaaccggagatgcagcagggcgacggcacggaggcgcaggtgacgtgggaggaccagcag 175 Query: 149 aacatcaaccggttcggccgcctcaacaaccgcctccacgagctcgccgacgagatcagg 208 ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| | Sbjct: 176 aacatcaaccgcttcggtcgcctcaacaaccgcctccacgagctccaggacgagatcaag 235 Query: 209 ctcgccaaggaagcaaatgaaaaccttgaggatgcggggaatgaactcatcttgtctgat 268 ||||| ||||| | ||||| |||||||| ||||| |||||||||||||||||||| ||| Sbjct: 236 ctcgcgaaggagacgaatgagaaccttgatgatgctgggaatgaactcatcttgtcggat 295 Query: 269 gaagatgtggtgcgtttccaaattggggaagtgtttgcccacatgccagtggacgatgtg 328 ||||| || || || ||||||||||||||||||||||| ||||||||| ||| || || Sbjct: 296 gaagacgttgtacgcttccaaattggggaagtgtttgctcacatgccaagggatgacgtc 355 Query: 329 gaaactaggctagagcagatgaaagaggatgcggctatgaag 370 || |||||||| ||||||||||||||||||||||||| |||| Sbjct: 356 gagactaggctggagcagatgaaagaggatgcggctaagaag 397 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 399 ccatccttgcccagatggccgaactgaagaagatcctctacgggaaatttggagaggcca 458 ||||||| |||||||||||||| ||||||||||| || |||||||| || || |||| Sbjct: 426 ccatcctggcccagatggccgagctgaagaagatactgtacgggaagttcaaggatgcca 485 Query: 459 tcaacctggaggaagatt 476 |||||||||||||||||| Sbjct: 486 tcaacctggaggaagatt 503
>gb|AC146816.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1434D10 map near E1419S, complete sequence Length = 133421 Score = 242 bits (122), Expect = 2e-60 Identities = 233/270 (86%) Strand = Plus / Plus Query: 216 aggaagcaaatgaaaaccttgaggatgcggggaatgaactcatcttgtctgatgaagatg 275 ||||||||||||| |||||||| ||||| ||||||||||||||| |||| || ||||| | Sbjct: 96946 aggaagcaaatgagaaccttgatgatgctgggaatgaactcatcctgtcagacgaagacg 97005 Query: 276 tggtgcgtttccaaattggggaagtgtttgcccacatgccagtggacgatgtggaaacta 335 ||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||| || | Sbjct: 97006 tggtgcggttccaaattggagaagtgtttgcccacatgccaagggatgatgtggagacaa 97065 Query: 336 ggctagagcagatgaaagaggatgcggctatgaagttagagaagctggaggaagagaagg 395 |||| |||||||||||||||||||| |||| |||||| |||| ||||||| | ||||||| Sbjct: 97066 ggctggagcagatgaaagaggatgcagctaagaagttggagaggctggagcaggagaagg 97125 Query: 396 aatccatccttgcccagatggccgaactgaagaagatcctctacgggaaatttggagagg 455 |||||||| | |||||||||| |||||||||||||| || ||||| || || || | Sbjct: 97126 aatccatcgtctcccagatggctgaactgaagaagatactgtacggaaagttcaaggacg 97185 Query: 456 ccatcaacctggaggaagattgatgtcgag 485 ||||||||||||| ||||||| || ||||| Sbjct: 97186 ccatcaacctggaagaagattaatatcgag 97215 Score = 151 bits (76), Expect = 4e-33 Identities = 106/116 (91%) Strand = Plus / Plus Query: 103 gcagggcgatggcacagaggcgcaggtgacgtgggatgaccagcagaacatcaaccggtt 162 |||||| || ||||| |||||||||||||||||||| |||||||||||||||||||| || Sbjct: 93476 gcagggggacggcacggaggcgcaggtgacgtgggaggaccagcagaacatcaaccgctt 93535 Query: 163 cggccgcctcaacaaccgcctccacgagctcgccgacgagatcaggctcgccaagg 218 |||||||||||||||||||||||||||||| |||||| |||| ||||||||||| Sbjct: 93536 tggccgcctcaacaaccgcctccacgagctccacgacgaaatcaagctcgccaagg 93591 Score = 52.0 bits (26), Expect = 0.003 Identities = 26/26 (100%) Strand = Plus / Plus Query: 82 ccgaagggaaccggagatgcagcagg 107 |||||||||||||||||||||||||| Sbjct: 93329 ccgaagggaaccggagatgcagcagg 93354
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 242 bits (122), Expect = 2e-60 Identities = 233/270 (86%) Strand = Plus / Minus Query: 216 aggaagcaaatgaaaaccttgaggatgcggggaatgaactcatcttgtctgatgaagatg 275 ||||||||||||| |||||||| ||||| ||||||||||||||| |||| || ||||| | Sbjct: 23800092 aggaagcaaatgagaaccttgatgatgctgggaatgaactcatcctgtcagacgaagacg 23800033 Query: 276 tggtgcgtttccaaattggggaagtgtttgcccacatgccagtggacgatgtggaaacta 335 ||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||| || | Sbjct: 23800032 tggtgcggttccaaattggagaagtgtttgcccacatgccaagggatgatgtggagacaa 23799973 Query: 336 ggctagagcagatgaaagaggatgcggctatgaagttagagaagctggaggaagagaagg 395 |||| |||||||||||||||||||| |||| |||||| |||| ||||||| | ||||||| Sbjct: 23799972 ggctggagcagatgaaagaggatgcagctaagaagttggagaggctggagcaggagaagg 23799913 Query: 396 aatccatccttgcccagatggccgaactgaagaagatcctctacgggaaatttggagagg 455 |||||||| | |||||||||| |||||||||||||| || ||||| || || || | Sbjct: 23799912 aatccatcgtctcccagatggctgaactgaagaagatactgtacggaaagttcaaggacg 23799853 Query: 456 ccatcaacctggaggaagattgatgtcgag 485 ||||||||||||| ||||||| || ||||| Sbjct: 23799852 ccatcaacctggaagaagattaatatcgag 23799823 Score = 151 bits (76), Expect = 4e-33 Identities = 106/116 (91%) Strand = Plus / Minus Query: 103 gcagggcgatggcacagaggcgcaggtgacgtgggatgaccagcagaacatcaaccggtt 162 |||||| || ||||| |||||||||||||||||||| |||||||||||||||||||| || Sbjct: 23803562 gcagggggacggcacggaggcgcaggtgacgtgggaggaccagcagaacatcaaccgctt 23803503 Query: 163 cggccgcctcaacaaccgcctccacgagctcgccgacgagatcaggctcgccaagg 218 |||||||||||||||||||||||||||||| |||||| |||| ||||||||||| Sbjct: 23803502 tggccgcctcaacaaccgcctccacgagctccacgacgaaatcaagctcgccaagg 23803447 Score = 52.0 bits (26), Expect = 0.003 Identities = 26/26 (100%) Strand = Plus / Minus Query: 82 ccgaagggaaccggagatgcagcagg 107 |||||||||||||||||||||||||| Sbjct: 23803709 ccgaagggaaccggagatgcagcagg 23803684
>emb|AJ310145.1|ZMA310145 Zea mays vip3 gene, exons 1-3 Length = 6738 Score = 232 bits (117), Expect = 1e-57 Identities = 219/253 (86%) Strand = Plus / Plus Query: 224 aatgaaaaccttgaggatgcggggaatgaactcatcttgtctgatgaagatgtggtgcgt 283 ||||| |||||||| ||||| |||||||||||||||||||| |||||||| || || || Sbjct: 4783 aatgagaaccttgatgatgctgggaatgaactcatcttgtccgatgaagacgttgtacgc 4842 Query: 284 ttccaaattggggaagtgtttgcccacatgccagtggacgatgtggaaactaggctagag 343 ||||||||||||||||||||||| ||||||||| ||| || || || |||||||| ||| Sbjct: 4843 ttccaaattggggaagtgtttgctcacatgccaagggatgacgtcgagactaggctggag 4902 Query: 344 cagatgaaagaggatgcggctatgaagttagagaagctggaggaagagaaggaatccatc 403 |||||||||||||||||||||| |||| | |||| | | ||||| || |||||||||||| Sbjct: 4903 cagatgaaagaggatgcggctaagaagctggagaggttagaggaggaaaaggaatccatc 4962 Query: 404 cttgcccagatggccgaactgaagaagatcctctacgggaaatttggagaggccatcaac 463 || |||||||||||||| ||||||||||| || |||||||| || || ||||||||| Sbjct: 4963 ctggcccagatggccgagctgaagaagatactgtacgggaagttcaaggatgccatcaac 5022 Query: 464 ctggaggaagatt 476 ||||||||||||| Sbjct: 5023 ctggaggaagatt 5035 Score = 143 bits (72), Expect = 1e-30 Identities = 105/116 (90%) Strand = Plus / Plus Query: 103 gcagggcgatggcacagaggcgcaggtgacgtgggatgaccagcagaacatcaaccggtt 162 ||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| || Sbjct: 2844 gcagggcgacggcacggaggcgcaggtgacgtgggaggaccagcagaacatcaaccgctt 2903 Query: 163 cggccgcctcaacaaccgcctccacgagctcgccgacgagatcaggctcgccaagg 218 ||| ||||||||||||||||||||||||||| || ||||||| |||||| |||| Sbjct: 2904 cggtcgcctcaacaaccgcctccacgagctccaggaagagatcaagctcgcaaagg 2959
>gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, complete sequence Length = 184961 Score = 48.1 bits (24), Expect = 0.046 Identities = 24/24 (100%) Strand = Plus / Minus Query: 374 gagaagctggaggaagagaaggaa 397 |||||||||||||||||||||||| Sbjct: 114239 gagaagctggaggaagagaaggaa 114216
>ref|XM_520133.2| PREDICTED: Pan troglodytes hypothetical LOC464596 (LOC464596), mRNA Length = 6117 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 374 gagaagctggaggaagagaagga 396 ||||||||||||||||||||||| Sbjct: 2438 gagaagctggaggaagagaagga 2460
>gb|BC047097.1| Homo sapiens KIAA1529, mRNA (cDNA clone IMAGE:5268490), partial cds Length = 2796 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 374 gagaagctggaggaagagaagga 396 ||||||||||||||||||||||| Sbjct: 2409 gagaagctggaggaagagaagga 2431
>gb|BC112930.1| Homo sapiens KIAA1529, mRNA (cDNA clone IMAGE:6473441), complete cds Length = 5610 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 374 gagaagctggaggaagagaagga 396 ||||||||||||||||||||||| Sbjct: 2703 gagaagctggaggaagagaagga 2725
>emb|AL512590.2| Human DNA sequence from clone RP11-23J9 on chromosome 9 Contains the 3' end of the gene for KIAA1529 protein, the 5' end of a gene for tudor repeat associator with PCTAIRE 2 (PCTAIRE2BP), a pseudogene similar to part of ral guanine nucleotide dissociation stimulator (RALGDS) and two CpG islands, complete sequence Length = 165432 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 374 gagaagctggaggaagagaagga 396 ||||||||||||||||||||||| Sbjct: 51958 gagaagctggaggaagagaagga 51980
>emb|CR749320.1| Homo sapiens mRNA; cDNA DKFZp686B2031 (from clone DKFZp686B2031) Length = 5232 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 374 gagaagctggaggaagagaagga 396 ||||||||||||||||||||||| Sbjct: 2408 gagaagctggaggaagagaagga 2430
>emb|AL365322.10| Mouse DNA sequence from clone RP23-282D4 on chromosome 1, complete sequence Length = 259487 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 375 agaagctggaggaagagaaggaa 397 ||||||||||||||||||||||| Sbjct: 19378 agaagctggaggaagagaaggaa 19400
>ref|NM_020893.1| Homo sapiens KIAA1529 (KIAA1529), mRNA dbj|AB040962.1| Homo sapiens mRNA for KIAA1529 protein, partial cds Length = 6269 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 374 gagaagctggaggaagagaagga 396 ||||||||||||||||||||||| Sbjct: 3690 gagaagctggaggaagagaagga 3712
>gb|AC093925.5| Genomic sequence for Mus musculus, clone RP23-304H5, complete sequence Length = 227242 Score = 44.1 bits (22), Expect = 0.72 Identities = 22/22 (100%) Strand = Plus / Plus Query: 246 ggaatgaactcatcttgtctga 267 |||||||||||||||||||||| Sbjct: 128014 ggaatgaactcatcttgtctga 128035
>emb|AL109627.18|HSJ733M16 Human DNA sequence from clone RP4-733M16 on chromosome 1p36.11-36.23 Contains four novel genes, a novel gene (FLJ33962), a novel gene (MGC10731), the 3' end of a novel gene (KIAA1332), a metallothionein family pseudogene and three CpG islands, complete sequence Length = 120825 Score = 44.1 bits (22), Expect = 0.72 Identities = 22/22 (100%) Strand = Plus / Plus Query: 638 tccagcagaagcctggggagag 659 |||||||||||||||||||||| Sbjct: 72507 tccagcagaagcctggggagag 72528
>emb|AL606533.4| Mouse DNA sequence from clone RP23-312D21 on chromosome 13 Contains the 5' end of the gene for a novel serine (or cysteine) proteinase inhibitor clade B (Serpinb) member, complete sequence Length = 51022 Score = 44.1 bits (22), Expect = 0.72 Identities = 22/22 (100%) Strand = Plus / Minus Query: 372 tagagaagctggaggaagagaa 393 |||||||||||||||||||||| Sbjct: 17976 tagagaagctggaggaagagaa 17955
>gb|AC186203.4| Canis Familiaris chromosome 26, clone XX-299G16, complete sequence Length = 181395 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 706 tgttttaagctagtgagtatggttt 730 |||||||||||||| |||||||||| Sbjct: 113367 tgttttaagctagtaagtatggttt 113343
>gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, complete sequence Length = 169321 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 ctctctcagccccctactgct 26 ||||||||||||||||||||| Sbjct: 39793 ctctctcagccccctactgct 39813
>gb|AY016023.1| Sphoeroides nephelus alpha globin gene cluster, complete sequence Length = 167215 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 gaagctggaggaagagaagga 396 ||||||||||||||||||||| Sbjct: 55301 gaagctggaggaagagaagga 55281
>gb|AC114583.7| Mus musculus chromosome 1, clone RP23-195A24, complete sequence Length = 227529 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 373 agagaagctggaggaagagaaggaa 397 |||||||||||||||||| |||||| Sbjct: 197184 agagaagctggaggaagaaaaggaa 197160
>gb|AC121237.19| Medicago truncatula clone mth2-22g11, complete sequence Length = 127731 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 556 ctacattgtttctcgtgatgattgt 580 ||||||||||||| ||||||||||| Sbjct: 8325 ctacattgtttctggtgatgattgt 8301
>gb|AC158217.4| Mus musculus chromosome 5, clone RP24-377B20, complete sequence Length = 160008 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 ctctctcagccccctactgct 26 ||||||||||||||||||||| Sbjct: 53127 ctctctcagccccctactgct 53107
>gb|AE009757.1|AE009757 Pyrobaculum aerophilum strain IM2 section 12 of 201 of the complete genome Length = 14173 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 169 cctcaacaaccgcctccacgagctc 193 |||| |||||||||||||||||||| Sbjct: 7917 cctccacaaccgcctccacgagctc 7893
>emb|BX323996.10| Zebrafish DNA sequence from clone CH211-12K10 in linkage group 17, complete sequence Length = 169351 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 373 agagaagctggaggaagagaa 393 ||||||||||||||||||||| Sbjct: 37068 agagaagctggaggaagagaa 37088
>dbj|AP006397.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT29J15, TM0280a, complete sequence Length = 47722 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 216 aggaagcaaatgaaaaccttgaggatgcg 244 ||||| ||||||||||| ||||||||||| Sbjct: 2161 aggaaacaaatgaaaactttgaggatgcg 2133
>emb|BX005249.6| Zebrafish DNA sequence from clone CH211-188M4, complete sequence Length = 154305 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 agagcagatgaaagaggatgc 360 ||||||||||||||||||||| Sbjct: 125307 agagcagatgaaagaggatgc 125287
>gb|AC119189.8| Mus musculus chromosome 1, clone RP24-178E16, complete sequence Length = 182530 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 373 agagaagctggaggaagagaaggaa 397 |||||||||||||||||| |||||| Sbjct: 38104 agagaagctggaggaagaaaaggaa 38080 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 128,686,163 Number of extensions: 6905990 Number of successful extensions: 141782 Number of sequences better than 10.0: 33 Number of HSP's gapped: 141772 Number of HSP's successfully gapped: 40 Length of query: 754 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 732 Effective length of database: 18,508,616,841 Effective search space: 13548307527612 Effective search space used: 13548307527612 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)