ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf29c05 |
|---|---|
| Clone Library Name | barley_pub |
>P46687:GASA3_ARATH Gibberellin-regulated protein 3 precursor - Arabidopsis thaliana| (Mouse-ear cress) Length = 99 Score = 77.4 bits (189), Expect = 5e-14 Identities = 35/62 (56%), Positives = 39/62 (62%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAECNCVPSGTAGNKDECPCYRDKTTGHGARKRPK 375 C G+C RCSK+SR + CL+ C CC CNCVP GTAGN CPCY TT G R K Sbjct: 41 CGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGG---RLK 97 Query: 376 CP 381 CP Sbjct: 98 CP 99
>P46688:GASA2_ARATH Gibberellin-regulated protein 2 precursor - Arabidopsis thaliana| (Mouse-ear cress) Length = 99 Score = 77.4 bits (189), Expect = 5e-14 Identities = 35/62 (56%), Positives = 40/62 (64%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAECNCVPSGTAGNKDECPCYRDKTTGHGARKRPK 375 C G+C RCSK+SR CL+ C CC+ CNCVP GT+GN CPCY TT HG R K Sbjct: 41 CGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITT-HGGRL--K 97 Query: 376 CP 381 CP Sbjct: 98 CP 99
>P27057:GAST1_SOLLC GAST1 protein precursor - Solanum lycopersicum (Tomato)| (Lycopersicon esculentum) Length = 112 Score = 75.1 bits (183), Expect = 2e-13 Identities = 32/62 (51%), Positives = 37/62 (59%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAECNCVPSGTAGNKDECPCYRDKTTGHGARKRPK 375 C KC RCSK S C+ +C CCA+C CVP+GT GNK CPCY + T G PK Sbjct: 54 CQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGG---PK 110 Query: 376 CP 381 CP Sbjct: 111 CP 112
>P47926:RSI1_SOLLC RSI-1 protein precursor - Solanum lycopersicum (Tomato)| (Lycopersicon esculentum) Length = 96 Score = 69.7 bits (169), Expect = 1e-11 Identities = 29/62 (46%), Positives = 34/62 (54%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAECNCVPSGTAGNKDECPCYRDKTTGHGARKRPK 375 C +C RCS S C+ +C CCA C CVP G GNK CPCY + T G +PK Sbjct: 38 CKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEG---KPK 94 Query: 376 CP 381 CP Sbjct: 95 CP 96
>P46689:GASA1_ARATH Gibberellin-regulated protein 1 precursor - Arabidopsis thaliana| (Mouse-ear cress) Length = 98 Score = 68.2 bits (165), Expect = 3e-11 Identities = 31/62 (50%), Positives = 35/62 (56%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAECNCVPSGTAGNKDECPCYRDKTTGHGARKRPK 375 C C RC + R C + CG CC CNCVP GT GN D+C CY TT HG R+ K Sbjct: 40 CGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTT-HGGRR--K 96 Query: 376 CP 381 CP Sbjct: 97 CP 98
>P46690:GASA4_ARATH Gibberellin-regulated protein 4 precursor - Arabidopsis thaliana| (Mouse-ear cress) Length = 106 Score = 65.9 bits (159), Expect = 1e-10 Identities = 27/62 (43%), Positives = 32/62 (51%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAECNCVPSGTAGNKDECPCYRDKTTGHGARKRPK 375 C +C RC K H C+ +C CC +C CVP G GNK C CY + T G PK Sbjct: 48 CPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGG---PK 104 Query: 376 CP 381 CP Sbjct: 105 CP 106
>O65312:MEDEA_ARATH Polycomb group protein MEDEA - Arabidopsis thaliana (Mouse-ear| cress) Length = 689 Score = 35.8 bits (81), Expect = 0.15 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAECN-----CVPSGTAGNKDECPCY 333 C KCG +C + + C KYCG C +CN C + +CPC+ Sbjct: 452 CKSKCGQQCPCLTHENCCEKYCG-CSKDCNNRFGGCNCAIGQCTNRQCPCF 501
>P17511:MT1_CAEEL Metallothionein-1 - Caenorhabditis elegans| Length = 75 Score = 34.3 bits (77), Expect = 0.45 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +1 Query: 205 KCGVRCSKASRHDDCLKYCGICCAECNCVPSGTAGNKDECPCYRDKTTGHGARKRPKCP* 384 KCG +C + S C KYC +E C P AG K +C C H A ++ +C Sbjct: 13 KCGDKC-ECSGDKCCEKYCCEEASEKKCCP---AGCKGDCKC----ANCHCAEQK-QCGD 63 Query: 385 STH-HQPSSTAH 417 TH HQ ++ AH Sbjct: 64 KTHQHQGTAAAH 75
>O75095:MEGF6_HUMAN Multiple epidermal growth factor-like domains 6 precursor - Homo| sapiens (Human) Length = 1229 Score = 33.1 bits (74), Expect = 1.00 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 9/59 (15%) Frame = +1 Query: 196 CD---GKCGVRCSKASRHDDCLKYCGI------CCAECNCVPSGTAGNKDECPCYRDKT 345 CD G+CG RC + +DC + C + C + C+C + G +C C +T Sbjct: 602 CDSVSGECGKRCPAGFQGEDCGQECPVGTFGVNCSSSCSCGGAPCHGVTGQCRCPPGRT 660
>Q09654:ARD1_CAEEL Putative GTP-binding protein ard-1 homolog - Caenorhabditis elegans| Length = 539 Score = 32.7 bits (73), Expect = 1.3 Identities = 15/45 (33%), Positives = 27/45 (60%) Frame = +3 Query: 360 AQEAQVPMIDPPPAILHRPWRRLHSMHVPELLHASLSCPTTSQII 494 ++ ++P+ + PP ++H RLHS +V E + LSC T S ++ Sbjct: 142 SKHRRIPLTEKPPPLVHC---RLHSSYVVEFVCKELSCDTESPLM 183
>Q8S4P6:EZ1_MAIZE Polycomb protein EZ1 - Zea mays (Maize)| Length = 931 Score = 32.3 bits (72), Expect = 1.7 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCG---IC---CAECNCVPSGTAGNKDECPCY 333 C CG +C S C KYCG IC C+C S +CPC+ Sbjct: 683 CQSTCGKQCPCLSNGTCCEKYCGCPKICKNRFRGCHCAKSQCRSR--QCPCF 732
>Q01643:MS84B_DROME Male-specific sperm protein Mst84Db - Drosophila melanogaster| (Fruit fly) Length = 74 Score = 32.0 bits (71), Expect = 2.2 Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 3/48 (6%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAECN-CVPSG-TAGNKDEC-PC 330 C G CG C C CG CCA C C P G G C PC Sbjct: 15 CGGPCGP-CGPCGPCGSCCSPCGSCCAPCGPCGPCGPCCGGCGPCGPC 61
>Q9UHV2:SRTD1_HUMAN SERTA domain-containing protein 1 - Homo sapiens (Human)| Length = 236 Score = 31.6 bits (70), Expect = 2.9 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Frame = -3 Query: 419 PWAVEDGWWWVDHGHLGLLRAPWPVV------LSR*QGHSSLLPAVPDGTQLHSAQHIPQ 258 P AV+ WW+D GH + +AP V LS + H SL + PD L + Sbjct: 18 PLAVDS--WWLDPGHTAVAQAPPAVASSSLFDLSVLKLHHSLQQSEPD---LRHLVLVVN 72 Query: 257 YLRQSSCRLALEHLTPHLPSQNADPAM 177 LR+ +A P +PS A P++ Sbjct: 73 TLRRIQASMAPAAALPPVPSPPAAPSV 99
>P80012:VWF_BOVIN von Willebrand factor precursor - Bos taurus (Bovine)| Length = 937 Score = 31.6 bits (70), Expect = 2.9 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAECNCVP------SGTAGNKDECPCYRDKTTGHG 357 C C + C S D+ + +C C C P +G+ K +CPCY D G Sbjct: 660 CGTPCNLTCRSLSHPDE--ECTEVCLEGCFCPPGLFLDETGSCVPKAQCPCYYD-----G 712 Query: 358 ARKRPKCP*STHH 396 +P+ S HH Sbjct: 713 EIFQPEDIFSDHH 725
>P58280:MT1_BOVIN Metallothionein-1 - Bos taurus (Bovine)| Length = 61 Score = 31.6 bits (70), Expect = 2.9 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = +1 Query: 184 GSAFCDGKCGVRCSKASRHDDCLKYCGIC----CAEC--NCVPSGTAGNKDECPC 330 GS C G C +C KA R C K C C CA+C CV G + D+C C Sbjct: 11 GSCTCAGSC--KC-KACRCPSCKKSCCSCCPVGCAKCAQGCVCKGAS---DKCSC 59
>Q8S4P5:EZ2_MAIZE Polycomb protein EZ2 - Zea mays (Maize)| Length = 894 Score = 31.6 bits (70), Expect = 2.9 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAEC-----NCVPSGTAGNKDECPCY 333 C CG C A + C KYCG C C C + + +CPC+ Sbjct: 651 CQQMCGKDCPCADKGTCCEKYCG-CSKSCKNKFRGCHCAKSQCRSRQCPCF 700
>Q9NJB5:ONEC_DROME Homeobox protein onecut - Drosophila melanogaster (Fruit fly)| Length = 1081 Score = 31.2 bits (69), Expect = 3.8 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -1 Query: 613 ACHNSSARPALCMVNNTVGSRIGRYACMADHDLQLQAHDIMICDVVGH 470 A HNS ++ ++ T S +G + AD DL+L++HD + D H Sbjct: 1023 AIHNSMSQDPYSNLHTTAMSPLGAFDEDADMDLELESHDFDLVDPDEH 1070
>P09577:MT1B_SHEEP Metallothionein-1B - Ovis aries (Sheep)| Length = 61 Score = 31.2 bits (69), Expect = 3.8 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Frame = +1 Query: 181 AGSAFCDGKCGVRCSKASRHDDCLKYCGIC----CAEC--NCVPSGTAGNKDECPC 330 +GS C G C KA R C K C C CA+C CV G + D+C C Sbjct: 10 SGSCSCAGSC---TCKACRCPSCKKSCCSCCPVGCAKCAQGCVCKGAS---DKCSC 59
>Q18823:LAM2_CAEEL Laminin-like protein lam-2 precursor - Caenorhabditis elegans| Length = 1535 Score = 31.2 bits (69), Expect = 3.8 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 12/56 (21%) Frame = +1 Query: 199 DGKC-------GVRCSKASRHDDCLKYCGICCAECNCVPSGTAG-----NKDECPC 330 DG+C G++C + + H G+ C ECNC P G+ G N +C C Sbjct: 898 DGQCDCLPNVIGIQCDQCA-HGFYNITSGLGCQECNCDPLGSEGNTCDVNTGQCQC 952
>Q28833:VWF_PIG von Willebrand factor precursor - Sus scrofa (Pig)| Length = 2482 Score = 30.8 bits (68), Expect = 5.0 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 7/74 (9%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAE-CNCVP------SGTAGNKDECPCYRDKTTGH 354 C C + C S D+ C C E C C P SG K +CPCY D Sbjct: 335 CGTPCNLTCRSLSYPDE---ECAEDCLEGCFCPPGLYLDGSGDCVPKAQCPCYHD----- 386 Query: 355 GARKRPKCP*STHH 396 G +P+ S HH Sbjct: 387 GEIFQPEDIFSDHH 400
>Q8CIZ8:VWF_MOUSE von Willebrand factor precursor - Mus musculus (Mouse)| Length = 2813 Score = 30.8 bits (68), Expect = 5.0 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAECNCVPS------GTAGNKDECPCYRD 339 C C + C S D+ + +C C C P G K +CPCY D Sbjct: 661 CGNSCNLTCRSLSLPDE--ECSEVCLEGCYCPPGLYQDERGDCVPKAQCPCYYD 712
>P79378:MT1F_PIG Metallothionein-1F - Sus scrofa (Pig)| Length = 61 Score = 30.8 bits (68), Expect = 5.0 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 9/58 (15%) Frame = +1 Query: 184 GSAFCDGKCGVRCSKASRHDDCLKYCGICCAECNCVPSGTA---------GNKDECPC 330 GS C G C KA R C K C C+C P+G A G D+C C Sbjct: 11 GSCTCAGSC---TCKACRCTSCKKSC------CSCCPAGCAKCAQGCICKGASDKCSC 59
>P79376:MT1C_PIG Metallothionein-1C - Sus scrofa (Pig)| Length = 61 Score = 30.8 bits (68), Expect = 5.0 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 9/58 (15%) Frame = +1 Query: 184 GSAFCDGKCGVRCSKASRHDDCLKYCGICCAECNCVPSGTA---------GNKDECPC 330 GS C G C KA R C K C C+C P+G A G D+C C Sbjct: 11 GSCSCAGSC---TCKACRCTSCKKSC------CSCCPAGCARCAQGCICKGASDKCSC 59
>P67982:MT1A_SHEEP Metallothionein-1A - Ovis aries (Sheep)| Length = 61 Score = 30.8 bits (68), Expect = 5.0 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Frame = +1 Query: 184 GSAFCDGKCGVRCSKASRHDDCLKYCGIC----CAEC--NCVPSGTAGNKDECPC 330 GS C G C KA R C K C C CA+C CV G + D+C C Sbjct: 11 GSCSCAGSC---TCKACRCPSCKKSCCSCCPVGCAKCAQGCVCKGAS---DKCSC 59
>P49068:MT1A_PIG Metallothionein-1A - Sus scrofa (Pig)| Length = 61 Score = 30.8 bits (68), Expect = 5.0 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 9/58 (15%) Frame = +1 Query: 184 GSAFCDGKCGVRCSKASRHDDCLKYCGICCAECNCVPSGTA---------GNKDECPC 330 GS C G C KA R C K C C+C P+G A G D+C C Sbjct: 11 GSCSCAGSC---TCKACRCTSCKKSC------CSCCPAGCARCAQGCICKGASDKCSC 59
>P67983:MT1A_BOVIN Metallothionein-1A - Bos taurus (Bovine)| Length = 61 Score = 30.8 bits (68), Expect = 5.0 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Frame = +1 Query: 184 GSAFCDGKCGVRCSKASRHDDCLKYCGIC----CAEC--NCVPSGTAGNKDECPC 330 GS C G C KA R C K C C CA+C CV G + D+C C Sbjct: 11 GSCSCAGSC---TCKACRCPSCKKSCCSCCPVGCAKCAQGCVCKGAS---DKCSC 59
>Q8G777:SYV_BIFLO Valyl-tRNA synthetase - Bifidobacterium longum| Length = 911 Score = 30.4 bits (67), Expect = 6.4 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 419 PWAVEDGWWWVDHGHLGLLRAPWPVV 342 P+A E+ W W+ G + RA WPVV Sbjct: 777 PYATEEVWSWMHAGSGSVHRAAWPVV 802
>P79431:MT1E_PIG Metallothionein-1E - Sus scrofa (Pig)| Length = 61 Score = 30.4 bits (67), Expect = 6.5 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Frame = +1 Query: 184 GSAFCDGKCGVRCSKASRHDDCLKYCGIC----CAEC--NCVPSGTAGNKDECPC 330 GS C G C KA R C K C C CA+C C+ G + D+C C Sbjct: 11 GSCSCAGSC---TCKACRCTSCKKSCCSCCPVGCAKCAQGCICKGAS---DKCSC 59
>O88281:MEGF6_RAT Multiple epidermal growth factor-like domains 6 precursor - Rattus| norvegicus (Rat) Length = 1574 Score = 30.4 bits (67), Expect = 6.5 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%) Frame = +1 Query: 196 CD---GKCGVRCSKASRHDDCLKYCGI------CCAECNCVPSGTAGNKDECPCYRDKT 345 CD G+C +C + +DC + C + C C+CV + EC C KT Sbjct: 711 CDPVSGECRTQCPPGYQGEDCGQECPVGTFGVNCSGSCSCVGAPCHRVTGECLCPPGKT 769
>Q80V70:MEGF6_MOUSE Multiple epidermal growth factor-like domains 6 precursor - Mus| musculus (Mouse) Length = 1572 Score = 30.4 bits (67), Expect = 6.5 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%) Frame = +1 Query: 196 CD---GKCGVRCSKASRHDDCLKYCGI------CCAECNCVPSGTAGNKDECPCYRDKT 345 CD G+C +C + +DC + C + C C+CV + EC C KT Sbjct: 709 CDPVSGECRTQCPPGYQGEDCGQECPVGTFGVNCSGSCSCVGAPCHRVTGECLCPPGKT 767
>Q8CG65:SSPO_MOUSE SCO-spondin precursor - Mus musculus (Mouse)| Length = 4998 Score = 30.0 bits (66), Expect = 8.5 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = +1 Query: 196 CDGKCGVRCSKASRHDDCLKYCGICCAECNCVP 294 C CG C + +DC K GIC A CNC P Sbjct: 715 CAPVCGHHCGEP---EDC-KELGICVAGCNCPP 743
>O88942:NFAC1_MOUSE Nuclear factor of activated T-cells, cytoplasmic 1 - Mus musculus| (Mouse) Length = 717 Score = 30.0 bits (66), Expect = 8.5 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = +1 Query: 298 GTAGNKDECPCYRDKTTGHGARKRPKCP*STHHQPSSTAHGGAYIA 435 G G++ PC + K + +G ++P C S HH P+ + HG ++ Sbjct: 255 GARGSRPTSPCNKRKYSLNG--RQPSC--SPHHSPTPSPHGSPRVS 296
>P30570:EC3_WHEAT EC protein III - Triticum aestivum (Wheat)| Length = 81 Score = 30.0 bits (66), Expect = 8.5 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 13/58 (22%) Frame = +1 Query: 196 CDGKCGVRCSKASRHD---------DCLKYCGICCAECNC----VPSGTAGNKDECPC 330 C G G RC+ A R D C ++CG C C C PSG A + C C Sbjct: 13 CPGGTGCRCTSA-RSDAAAGEHTTCGCGEHCG--CNPCACGREGTPSGRANRRANCSC 67 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 112,015,559 Number of extensions: 2415436 Number of successful extensions: 6874 Number of sequences better than 10.0: 33 Number of HSP's gapped: 6852 Number of HSP's successfully gapped: 33 Length of query: 227 Length of database: 100,686,439 Length adjustment: 109 Effective length of query: 118 Effective length of database: 70,788,284 Effective search space: 8353017512 Effective search space used: 8353017512 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
