ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf29a17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1A2WKS3:H2B10_ORYSI Histone H2B.10 - Oryza sativa subsp. indica (... 32 2.5
2Q8R4I1:ATX7_MOUSE Ataxin-7 - Mus musculus (Mouse) 32 3.3
3Q94JJ4:H2B4_ORYSJ Histone H2B.4 - Oryza sativa subsp. japonica (... 32 4.3
4A2WKP5:H2B4_ORYSI Histone H2B.4 - Oryza sativa subsp. indica (Rice) 32 4.3
5Q8VIB2:DAXX_RAT Death domain-associated protein 6 - Rattus norve... 32 4.3
6Q14767:LTBP2_HUMAN Latent-transforming growth factor beta-bindin... 31 5.6
7Q94JJ7:H2B3_ORYSJ Histone H2B.3 - Oryza sativa subsp. japonica (... 31 5.6
8O35613:DAXX_MOUSE Death domain-associated protein 6 - Mus muscul... 30 9.6

>A2WKS3:H2B10_ORYSI Histone H2B.10 - Oryza sativa subsp. indica (Rice)|
          Length = 153
 Score = 32.3 bits (72), Expect = 2.5
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 235 ELSSRAPPTDPPSACSRLPSGDARLQRWEGSRRGRDKLPHLTSNYTI 375
           E + +AP    P A  RLP+G A     EG + GR K       Y I
Sbjct: 22  EKAEKAPAGKKPKAEKRLPAGKAEKSSGEGKKAGRKKAKKSVETYKI 68



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>Q8R4I1:ATX7_MOUSE Ataxin-7 - Mus musculus (Mouse)|
          Length = 867

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 145 KIAPGPAVLLHLQLVPSTIVLPTCSLLGFDELSSRAPPTDPPSACSRLPSG--DARLQRW 318
           K  P     L+ Q   S  + P CS+     L+S +PP+  PS  S +PS     + Q+W
Sbjct: 595 KSVPAHGTTLNAQPAGSGAMDPVCSVQSRQVLASSSPPS-TPSGLSSVPSSPLSRKPQKW 653

Query: 319 EGSRRGRDK 345
           + S+  R K
Sbjct: 654 KPSKSIRPK 662



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>Q94JJ4:H2B4_ORYSJ Histone H2B.4 - Oryza sativa subsp. japonica (Rice)|
          Length = 153

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 235 ELSSRAPPTDPPSACSRLPSGDARLQRWEGSRRGRDKLPHLTSNYTI 375
           E + +AP    P A  RLP+G A     EG + GR K       Y I
Sbjct: 22  EKAEKAPAGKKPKAEKRLPAGKAEKGSGEGKKAGRKKAKKSVETYKI 68



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>A2WKP5:H2B4_ORYSI Histone H2B.4 - Oryza sativa subsp. indica (Rice)|
          Length = 153

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 235 ELSSRAPPTDPPSACSRLPSGDARLQRWEGSRRGRDKLPHLTSNYTI 375
           E + +AP    P A  RLP+G A     EG + GR K       Y I
Sbjct: 22  EKAEKAPAGKKPKAEKRLPAGKAEKGSGEGKKAGRKKAKKSVETYKI 68



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>Q8VIB2:DAXX_RAT Death domain-associated protein 6 - Rattus norvegicus (Rat)|
          Length = 731

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 235 ELSSRAPPTDPPSACSRLPSGDARLQRWEGSRRGRDKLPHLTSNY 369
           E S   PPTDPPS  +   +  +   R  GSRR   +L  L + Y
Sbjct: 152 ESSGDNPPTDPPSDLTNTETTASEASRTRGSRRQIQRLEQLLALY 196



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>Q14767:LTBP2_HUMAN Latent-transforming growth factor beta-binding protein 2 precursor|
           - Homo sapiens (Human)
          Length = 1821

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +1

Query: 157 GPAVLLHLQLVPSTIVLPTCSLLGFDELSSRAPPTDPPSACSRLPSG 297
           G A +   Q+ PST VL T S  G D  ++ A     P  C  LP G
Sbjct: 821 GIAEIQEEQVTPSTDVLVTLSTPGIDRCAAGATNVCGPGTCVNLPDG 867



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>Q94JJ7:H2B3_ORYSJ Histone H2B.3 - Oryza sativa subsp. japonica (Rice)|
          Length = 153

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 235 ELSSRAPPTDPPSACSRLPSGDARLQRWEGSRRGRDKLPHLTSNYTI 375
           E + +AP    P A  RLP+G A     EG + GR K       Y I
Sbjct: 22  EKAEKAPAGKKPKAEKRLPAGKAEKGSGEGRKAGRKKAKKSVETYKI 68



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>O35613:DAXX_MOUSE Death domain-associated protein 6 - Mus musculus (Mouse)|
          Length = 739

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 235 ELSSRAPPTDPPSACSRLPSGDARLQRWEGSRRGRDKLPHLTSNY 369
           E S   PPT+PPS  +   +  +   R  GSRR   +L  L + Y
Sbjct: 160 EASGPNPPTEPPSDLTNTENTASEASRTRGSRRQIQRLEQLLALY 204


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 140,363,224
Number of extensions: 2924349
Number of successful extensions: 7682
Number of sequences better than 10.0: 8
Number of HSP's gapped: 7677
Number of HSP's successfully gapped: 8
Length of query: 289
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 177
Effective length of database: 69,965,399
Effective search space: 12383875623
Effective search space used: 12383875623
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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