ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf29a17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_953498.1| Neurospora crassa OR74A hypothetical protein (N... 52 0.003
2emb|AL713994.15| Mouse DNA sequence from clone RP23-378H5 on chr... 46 0.21
3emb|AL645726.22| Mouse DNA sequence from clone RP23-45M23 on chr... 44 0.83
4emb|CT737342.10| Pig DNA sequence from clone CH242-172F13 on chr... 42 3.3
5ref|NM_001063141.1| Oryza sativa (japonica cultivar-group) Os06g... 42 3.3
6gb|BT018071.1| Zea mays clone EL01N0551D12.c mRNA sequence 42 3.3
7gb|AC117721.8| Mus musculus chromosome 1, clone RP24-196D2, comp... 42 3.3
8gb|AC146078.3| Pan troglodytes BAC clone RP43-45C11 from 7, comp... 42 3.3
9gb|AC127248.3| Mus musculus BAC clone RP24-442E2 from chromosome... 42 3.3
10gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence 42 3.3
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
13gb|AC139053.15| Mus musculus chromosome 1, clone RP23-2I19, comp... 42 3.3
14emb|AL592168.5| Human DNA sequence from clone RP11-415K3 on chro... 42 3.3
15dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
16dbj|AP005810.4| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
17dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 3.3
18dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
19emb|AL808125.11| Mouse DNA sequence from clone RP23-193L22 on ch... 42 3.3
20dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
21dbj|AK122142.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 3.3
22dbj|AK098848.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 3.3
23dbj|AK061552.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 3.3
24gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 3.3
25gb|U95139.1|CPU95139 Cryphonectria parasitica GTP binding protei... 42 3.3
26gb|AC154362.1| Mus musculus BAC clone RP23-154E1 from 14, comple... 42 3.3 
>ref|XM_953498.1| Neurospora crassa OR74A hypothetical protein (NCU09439.1) partial
          mRNA
          Length = 855
 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 51 caccaccttcctccccatcccctccc 76
          ||||||||||||||||||||||||||
Sbjct: 48 caccaccttcctccccatcccctccc 73
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>emb|AL713994.15| Mouse DNA sequence from clone RP23-378H5 on chromosome 11 Contains the
             5' end of the Arf-1 gene for ADP-ribosylation factor 1,
             the Wnt3a gene for wingless-related MMTV integration site
             3A, the Wnt9a gene for wingless-type MMTV integration site
             9A, two novel genes, the 5' end of a novel gene and five
             CpG islands, complete sequence
          Length = 225396

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 49    accaccaccttcctccccatcccctcc 75
             |||| ||||||||||||||||||||||
Sbjct: 48484 accaacaccttcctccccatcccctcc 48458
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>emb|AL645726.22| Mouse DNA sequence from clone RP23-45M23 on chromosome 1, complete
             sequence
          Length = 231347

 Score = 44.1 bits (22), Expect = 0.83
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 56    ccttcctccccatcccctcccc 77
             ||||||||||||||||||||||
Sbjct: 39851 ccttcctccccatcccctcccc 39830
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>emb|CT737342.10| Pig DNA sequence from clone CH242-172F13 on chromosome 7, complete
              sequence
          Length = 193591

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     ccaccaccttcctccccatcc 70
              |||||||||||||||||||||
Sbjct: 191223 ccaccaccttcctccccatcc 191243
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>ref|NM_001063141.1| Oryza sativa (japonica cultivar-group) Os06g0114700 (Os06g0114700)
           mRNA, complete cds
          Length = 1057

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 47  ccaccaccaccttcctccccatcccctcc 75
           ||||||||||||||||| ||||| |||||
Sbjct: 228 ccaccaccaccttcctctccatctcctcc 200
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>gb|BT018071.1| Zea mays clone EL01N0551D12.c mRNA sequence
          Length = 833

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 ctcgtcgcctccttcccttcc 40
          |||||||||||||||||||||
Sbjct: 56 ctcgtcgcctccttcccttcc 76
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>gb|AC117721.8| Mus musculus chromosome 1, clone RP24-196D2, complete sequence
          Length = 170426

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 523   ctgtagctcttcttccagtgg 543
             |||||||||||||||||||||
Sbjct: 46181 ctgtagctcttcttccagtgg 46201
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>gb|AC146078.3| Pan troglodytes BAC clone RP43-45C11 from 7, complete sequence
          Length = 53091

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    ccaccttcctccccatcccct 73
             |||||||||||||||||||||
Sbjct: 38659 ccaccttcctccccatcccct 38639
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>gb|AC127248.3| Mus musculus BAC clone RP24-442E2 from chromosome 5, complete sequence
          Length = 176488

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 440   tttaatttttgtactggatca 460
             |||||||||||||||||||||
Sbjct: 36514 tttaatttttgtactggatca 36494
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>gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence
          Length = 181705

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 312    gaggtgggagggaagcagaag 332
              |||||||||||||||||||||
Sbjct: 180639 gaggtgggagggaagcagaag 180659
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7
          Length = 29644043

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 44       tcgccaccaccaccttcctcc 64
                |||||||||||||||||||||
Sbjct: 21100098 tcgccaccaccaccttcctcc 21100118
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 47     ccaccaccaccttcctccccatcccctcc 75
              ||||||||||||||||| ||||| |||||
Sbjct: 842959 ccaccaccaccttcctctccatctcctcc 842987
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>gb|AC139053.15| Mus musculus chromosome 1, clone RP23-2I19, complete sequence
          Length = 232850

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 523   ctgtagctcttcttccagtgg 543
             |||||||||||||||||||||
Sbjct: 71303 ctgtagctcttcttccagtgg 71283
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>emb|AL592168.5| Human DNA sequence from clone RP11-415K3 on chromosome Xp21.1-21.2,
             complete sequence
          Length = 36708

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 766   tgatttttcagtaataataca 786
             |||||||||||||||||||||
Sbjct: 29408 tgatttttcagtaataataca 29428
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>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1058_A12
          Length = 152269

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 44     tcgccaccaccaccttcctcc 64
              |||||||||||||||||||||
Sbjct: 143397 tcgccaccaccaccttcctcc 143417
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>dbj|AP005810.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0696F12
          Length = 165227

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 44    tcgccaccaccaccttcctcc 64
             |||||||||||||||||||||
Sbjct: 21459 tcgccaccaccaccttcctcc 21479
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 47     ccaccaccaccttcctccccatcccctcc 75
              |||||||||||||||||||| || |||||
Sbjct: 984512 ccaccaccaccttcctccccttcacctcc 984540
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>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0541H01
          Length = 157519

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 47     ccaccaccaccttcctccccatcccctcc 75
              ||||||||||||||||| ||||| |||||
Sbjct: 126093 ccaccaccaccttcctctccatctcctcc 126121
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>emb|AL808125.11| Mouse DNA sequence from clone RP23-193L22 on chromosome 2, complete
             sequence
          Length = 236619

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 65    ccatcccctccccgcaccagtgcac 89
             |||||||| ||||||||||||||||
Sbjct: 76409 ccatccccaccccgcaccagtgcac 76433
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>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019F11
          Length = 123673

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 47    ccaccaccaccttcctccccatcccctcc 75
             ||||||||||||||||| ||||| |||||
Sbjct: 23854 ccaccaccaccttcctctccatctcctcc 23882
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>dbj|AK122142.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136J12, full
           insert sequence
          Length = 1035

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 47  ccaccaccaccttcctccccatcccctcc 75
           ||||||||||||||||| ||||| |||||
Sbjct: 206 ccaccaccaccttcctctccatctcctcc 178
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>dbj|AK098848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D16, full
           insert sequence
          Length = 960

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 47  ccaccaccaccttcctccccatcccctcc 75
           ||||||||||||||||| ||||| |||||
Sbjct: 153 ccaccaccaccttcctctccatctcctcc 125
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>dbj|AK061552.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B09, full
           insert sequence
          Length = 1057

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 47  ccaccaccaccttcctccccatcccctcc 75
           ||||||||||||||||| ||||| |||||
Sbjct: 228 ccaccaccaccttcctctccatctcctcc 200
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 47     ccaccaccaccttcctccccatcccctcc 75
              |||||||||||||||||||| || |||||
Sbjct: 659512 ccaccaccaccttcctccccttcacctcc 659540
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>gb|U95139.1|CPU95139 Cryphonectria parasitica GTP binding protein beta subunit (cpgb-1)
           gene, complete cds
          Length = 2634

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 53  ccaccttcctccccatcccctcccc 77
           |||||||||| ||||||||||||||
Sbjct: 133 ccaccttccttcccatcccctcccc 157
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>gb|AC154362.1| Mus musculus BAC clone RP23-154E1 from 14, complete sequence
          Length = 205650

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 830    gaaactaaaatacatcatttt 850
              |||||||||||||||||||||
Sbjct: 104404 gaaactaaaatacatcatttt 104424


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 153,613,429
Number of extensions: 9513107
Number of successful extensions: 186013
Number of sequences better than 10.0: 26
Number of HSP's gapped: 186013
Number of HSP's successfully gapped: 26
Length of query: 867
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 845
Effective length of database: 18,508,616,841
Effective search space: 15639781230645
Effective search space used: 15639781230645
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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