ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf28o10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P32660:ATC5_YEAST Probable phospholipid-transporting ATPase DNF1... 32 2.5
2Q6DCC7:LYSM4_XENLA LysM and putative peptidoglycan-binding domai... 31 5.5

>P32660:ATC5_YEAST Probable phospholipid-transporting ATPase DNF1 - Saccharomyces|
            cerevisiae (Baker's yeast)
          Length = 1571
 Score = 32.3 bits (72), Expect = 2.5
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +2

Query: 104  RVVGSPGTWSGMALRLSQCVFAAASNFALHSAFGYSDYSAFFYLNVVLILQLMWSLG 274
            R+ G+P  W+         VF  A  F L   F Y  +  FFY   V I++ MW  G
Sbjct: 1371 RIYGAPSFWA---------VFFVAVLFCLLPRFTYDSFQKFFYPTDVEIVREMWQHG 1418



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>Q6DCC7:LYSM4_XENLA LysM and putative peptidoglycan-binding domain-containing protein 4|
           - Xenopus laevis (African clawed frog)
          Length = 289

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 177 EAAAKTHCDSRSAMPLHVPGLPTTRFICLGSACCGEDDGVSW 52
           EAAA+TH     +  L  P LP TR +       G D G+ W
Sbjct: 168 EAAAQTHDLFNESFALDSPSLPPTRILGQKQPASGADWGIRW 209


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 141,509,292
Number of extensions: 2977257
Number of successful extensions: 6979
Number of sequences better than 10.0: 2
Number of HSP's gapped: 6969
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 174
Effective length of database: 69,965,399
Effective search space: 12173979426
Effective search space used: 12173979426
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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