ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf28o10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT829838.1| Oryza sativa (indica cultivar-group) cDNA clone:... 123 1e-24
2ref|NM_001069207.1| Oryza sativa (japonica cultivar-group) Os09g... 123 1e-24
3dbj|AK063577.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 1e-24
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 113 1e-21
5dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic D... 113 1e-21
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.052
7dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.052
8emb|AJ001685.1|HSAJ1685 Homo sapiens NKG2E gene 46 0.21
9gb|AC022075.29| Homo sapiens 12 BAC RP11-277P12 (Roswell Park Ca... 46 0.21
10gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome 44 0.82
11gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome 44 0.82
12gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete ... 44 0.82
13emb|CR792424.26| Zebrafish DNA sequence from clone DKEY-38C18 in... 42 3.2
14gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 3.2
15gb|AF041004.1|HSPPLG6 Homo sapiens periplakin (PPL) gene, exons ... 42 3.2
16gb|AC027687.7| Homo sapiens chromosome 16 clone RP11-61L4, compl... 42 3.2

>emb|CT829838.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056J04, full
           insert sequence
          Length = 787
 Score =  123 bits (62), Expect = 1e-24
 Identities = 113/130 (86%)
 Strand = Plus / Plus

                                                                       
Query: 107 gtggtggggagcccggggacatggagcggcatggcgctgcggctgtcgcagtgcgtcttc 166
           ||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||
Sbjct: 213 gtggtggggagcccggggacatggagcgggatgtcgctgcgggtgtcgcaatgcgtcttc 272

                                                                       
Query: 167 gccgccgcctccaacttcgcgttgcactccgccttcggctactccgactacagcgccttc 226
           |||| |||||||  | ||||  ||  |||||||| ||||| |||| |||||| |||||||
Sbjct: 273 gccggcgcctccgtcgtcgccatggcctccgcctacggcttctccaactacaccgccttc 332

                     
Query: 227 ttctacttga 236
           | ||||||||
Sbjct: 333 tgctacttga 342



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>ref|NM_001069207.1| Oryza sativa (japonica cultivar-group) Os09g0249400 (Os09g0249400)
           mRNA, complete cds
          Length = 757

 Score =  123 bits (62), Expect = 1e-24
 Identities = 113/130 (86%)
 Strand = Plus / Plus

                                                                       
Query: 107 gtggtggggagcccggggacatggagcggcatggcgctgcggctgtcgcagtgcgtcttc 166
           ||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||
Sbjct: 183 gtggtggggagcccggggacatggagcgggatgtcgctgcgggtgtcgcaatgcgtcttc 242

                                                                       
Query: 167 gccgccgcctccaacttcgcgttgcactccgccttcggctactccgactacagcgccttc 226
           |||| |||||||  | ||||  ||  |||||||| ||||| |||| |||||| |||||||
Sbjct: 243 gccggcgcctccgtcgtcgccatggcctccgcctacggcttctccaactacaccgccttc 302

                     
Query: 227 ttctacttga 236
           | ||||||||
Sbjct: 303 tgctacttga 312



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>dbj|AK063577.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H03, full
           insert sequence
          Length = 757

 Score =  123 bits (62), Expect = 1e-24
 Identities = 113/130 (86%)
 Strand = Plus / Plus

                                                                       
Query: 107 gtggtggggagcccggggacatggagcggcatggcgctgcggctgtcgcagtgcgtcttc 166
           ||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||
Sbjct: 183 gtggtggggagcccggggacatggagcgggatgtcgctgcgggtgtcgcaatgcgtcttc 242

                                                                       
Query: 167 gccgccgcctccaacttcgcgttgcactccgccttcggctactccgactacagcgccttc 226
           |||| |||||||  | ||||  ||  |||||||| ||||| |||| |||||| |||||||
Sbjct: 243 gccggcgcctccgtcgtcgccatggcctccgcctacggcttctccaactacaccgccttc 302

                     
Query: 227 ttctacttga 236
           | ||||||||
Sbjct: 303 tgctacttga 312



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score =  113 bits (57), Expect = 1e-21
 Identities = 105/121 (86%)
 Strand = Plus / Plus

                                                                           
Query: 107     gtggtggggagcccggggacatggagcggcatggcgctgcggctgtcgcagtgcgtcttc 166
               ||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||
Sbjct: 3691707 gtggtggggagcccggggacatggagcgggatgtcgctgcgggtgtcgcaatgcgtcttc 3691766

                                                                           
Query: 167     gccgccgcctccaacttcgcgttgcactccgccttcggctactccgactacagcgccttc 226
               |||| |||||||  | ||||  ||  |||||||| ||||| |||| |||||| |||||||
Sbjct: 3691767 gccggcgcctccgtcgtcgccatggcctccgcctacggcttctccaactacaccgccttc 3691826

                
Query: 227     t 227
               |
Sbjct: 3691827 t 3691827



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>dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1695_A02
          Length = 156214

 Score =  113 bits (57), Expect = 1e-21
 Identities = 105/121 (86%)
 Strand = Plus / Plus

                                                                          
Query: 107    gtggtggggagcccggggacatggagcggcatggcgctgcggctgtcgcagtgcgtcttc 166
              ||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||
Sbjct: 99968  gtggtggggagcccggggacatggagcgggatgtcgctgcgggtgtcgcaatgcgtcttc 100027

                                                                          
Query: 167    gccgccgcctccaacttcgcgttgcactccgccttcggctactccgactacagcgccttc 226
              |||| |||||||  | ||||  ||  |||||||| ||||| |||| |||||| |||||||
Sbjct: 100028 gccggcgcctccgtcgtcgccatggcctccgcctacggcttctccaactacaccgccttc 100087

               
Query: 227    t 227
              |
Sbjct: 100088 t 100088



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.052
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 746     gttatgacttatgagcaccttgcg 769
               ||||||||||||||||||||||||
Sbjct: 8970648 gttatgacttatgagcaccttgcg 8970625



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>dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0453A06
          Length = 154378

 Score = 48.1 bits (24), Expect = 0.052
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 746   gttatgacttatgagcaccttgcg 769
             ||||||||||||||||||||||||
Sbjct: 78403 gttatgacttatgagcaccttgcg 78380



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>emb|AJ001685.1|HSAJ1685 Homo sapiens NKG2E gene
          Length = 9555

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 793  atgtggaatcattgatatgaaga 815
            |||||||||||||||||||||||
Sbjct: 4008 atgtggaatcattgatatgaaga 4030



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>gb|AC022075.29| Homo sapiens 12 BAC RP11-277P12 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 168351

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 793  atgtggaatcattgatatgaaga 815
            |||||||||||||||||||||||
Sbjct: 1230 atgtggaatcattgatatgaaga 1252



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>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome
          Length = 6537648

 Score = 44.1 bits (22), Expect = 0.82
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 165    tcgccgccgcctccaacttcgc 186
              ||||||||||||||||||||||
Sbjct: 377641 tcgccgccgcctccaacttcgc 377620



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>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome
          Length = 6264404

 Score = 44.1 bits (22), Expect = 0.82
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 165    tcgccgccgcctccaacttcgc 186
              ||||||||||||||||||||||
Sbjct: 363471 tcgccgccgcctccaacttcgc 363450



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>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome
          Length = 1913428

 Score = 44.1 bits (22), Expect = 0.82
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 364     cgtggcgattttcacgttctca 385
               ||||||||||||||||||||||
Sbjct: 1264296 cgtggcgattttcacgttctca 1264275



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>emb|CR792424.26| Zebrafish DNA sequence from clone DKEY-38C18 in linkage group 18,
              complete sequence
          Length = 190867

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 153    cgcagtgcgtcttcgccgccg 173
              |||||||||||||||||||||
Sbjct: 183415 cgcagtgcgtcttcgccgccg 183435



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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 208     ctccgactacagcgccttcttctac 232
               ||||||||||| |||||||||||||
Sbjct: 3053729 ctccgactacaccgccttcttctac 3053753



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>gb|AF041004.1|HSPPLG6 Homo sapiens periplakin (PPL) gene, exons 10 through 22 and complete
            cds
          Length = 15932

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 378  cgttctcaggagcctgtgcct 398
            |||||||||||||||||||||
Sbjct: 1650 cgttctcaggagcctgtgcct 1670



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>gb|AC027687.7| Homo sapiens chromosome 16 clone RP11-61L4, complete sequence
          Length = 169166

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 378   cgttctcaggagcctgtgcct 398
             |||||||||||||||||||||
Sbjct: 87763 cgttctcaggagcctgtgcct 87743


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 128,748,569
Number of extensions: 6709424
Number of successful extensions: 124105
Number of sequences better than 10.0: 16
Number of HSP's gapped: 124105
Number of HSP's successfully gapped: 16
Length of query: 858
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 836
Effective length of database: 18,508,616,841
Effective search space: 15473203679076
Effective search space used: 15473203679076
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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