| Clone Name | FLbaf28o10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT829838.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056J04, full insert sequence Length = 787 Score = 123 bits (62), Expect = 1e-24 Identities = 113/130 (86%) Strand = Plus / Plus Query: 107 gtggtggggagcccggggacatggagcggcatggcgctgcggctgtcgcagtgcgtcttc 166 ||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||| Sbjct: 213 gtggtggggagcccggggacatggagcgggatgtcgctgcgggtgtcgcaatgcgtcttc 272 Query: 167 gccgccgcctccaacttcgcgttgcactccgccttcggctactccgactacagcgccttc 226 |||| ||||||| | |||| || |||||||| ||||| |||| |||||| ||||||| Sbjct: 273 gccggcgcctccgtcgtcgccatggcctccgcctacggcttctccaactacaccgccttc 332 Query: 227 ttctacttga 236 | |||||||| Sbjct: 333 tgctacttga 342
>ref|NM_001069207.1| Oryza sativa (japonica cultivar-group) Os09g0249400 (Os09g0249400) mRNA, complete cds Length = 757 Score = 123 bits (62), Expect = 1e-24 Identities = 113/130 (86%) Strand = Plus / Plus Query: 107 gtggtggggagcccggggacatggagcggcatggcgctgcggctgtcgcagtgcgtcttc 166 ||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||| Sbjct: 183 gtggtggggagcccggggacatggagcgggatgtcgctgcgggtgtcgcaatgcgtcttc 242 Query: 167 gccgccgcctccaacttcgcgttgcactccgccttcggctactccgactacagcgccttc 226 |||| ||||||| | |||| || |||||||| ||||| |||| |||||| ||||||| Sbjct: 243 gccggcgcctccgtcgtcgccatggcctccgcctacggcttctccaactacaccgccttc 302 Query: 227 ttctacttga 236 | |||||||| Sbjct: 303 tgctacttga 312
>dbj|AK063577.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H03, full insert sequence Length = 757 Score = 123 bits (62), Expect = 1e-24 Identities = 113/130 (86%) Strand = Plus / Plus Query: 107 gtggtggggagcccggggacatggagcggcatggcgctgcggctgtcgcagtgcgtcttc 166 ||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||| Sbjct: 183 gtggtggggagcccggggacatggagcgggatgtcgctgcgggtgtcgcaatgcgtcttc 242 Query: 167 gccgccgcctccaacttcgcgttgcactccgccttcggctactccgactacagcgccttc 226 |||| ||||||| | |||| || |||||||| ||||| |||| |||||| ||||||| Sbjct: 243 gccggcgcctccgtcgtcgccatggcctccgcctacggcttctccaactacaccgccttc 302 Query: 227 ttctacttga 236 | |||||||| Sbjct: 303 tgctacttga 312
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 113 bits (57), Expect = 1e-21 Identities = 105/121 (86%) Strand = Plus / Plus Query: 107 gtggtggggagcccggggacatggagcggcatggcgctgcggctgtcgcagtgcgtcttc 166 ||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||| Sbjct: 3691707 gtggtggggagcccggggacatggagcgggatgtcgctgcgggtgtcgcaatgcgtcttc 3691766 Query: 167 gccgccgcctccaacttcgcgttgcactccgccttcggctactccgactacagcgccttc 226 |||| ||||||| | |||| || |||||||| ||||| |||| |||||| ||||||| Sbjct: 3691767 gccggcgcctccgtcgtcgccatggcctccgcctacggcttctccaactacaccgccttc 3691826 Query: 227 t 227 | Sbjct: 3691827 t 3691827
>dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1695_A02 Length = 156214 Score = 113 bits (57), Expect = 1e-21 Identities = 105/121 (86%) Strand = Plus / Plus Query: 107 gtggtggggagcccggggacatggagcggcatggcgctgcggctgtcgcagtgcgtcttc 166 ||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||| Sbjct: 99968 gtggtggggagcccggggacatggagcgggatgtcgctgcgggtgtcgcaatgcgtcttc 100027 Query: 167 gccgccgcctccaacttcgcgttgcactccgccttcggctactccgactacagcgccttc 226 |||| ||||||| | |||| || |||||||| ||||| |||| |||||| ||||||| Sbjct: 100028 gccggcgcctccgtcgtcgccatggcctccgcctacggcttctccaactacaccgccttc 100087 Query: 227 t 227 | Sbjct: 100088 t 100088
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 48.1 bits (24), Expect = 0.052 Identities = 24/24 (100%) Strand = Plus / Minus Query: 746 gttatgacttatgagcaccttgcg 769 |||||||||||||||||||||||| Sbjct: 8970648 gttatgacttatgagcaccttgcg 8970625
>dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0453A06 Length = 154378 Score = 48.1 bits (24), Expect = 0.052 Identities = 24/24 (100%) Strand = Plus / Minus Query: 746 gttatgacttatgagcaccttgcg 769 |||||||||||||||||||||||| Sbjct: 78403 gttatgacttatgagcaccttgcg 78380
>emb|AJ001685.1|HSAJ1685 Homo sapiens NKG2E gene Length = 9555 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 793 atgtggaatcattgatatgaaga 815 ||||||||||||||||||||||| Sbjct: 4008 atgtggaatcattgatatgaaga 4030
>gb|AC022075.29| Homo sapiens 12 BAC RP11-277P12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168351 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 793 atgtggaatcattgatatgaaga 815 ||||||||||||||||||||||| Sbjct: 1230 atgtggaatcattgatatgaaga 1252
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Minus Query: 165 tcgccgccgcctccaacttcgc 186 |||||||||||||||||||||| Sbjct: 377641 tcgccgccgcctccaacttcgc 377620
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Minus Query: 165 tcgccgccgcctccaacttcgc 186 |||||||||||||||||||||| Sbjct: 363471 tcgccgccgcctccaacttcgc 363450
>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome Length = 1913428 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Minus Query: 364 cgtggcgattttcacgttctca 385 |||||||||||||||||||||| Sbjct: 1264296 cgtggcgattttcacgttctca 1264275
>emb|CR792424.26| Zebrafish DNA sequence from clone DKEY-38C18 in linkage group 18, complete sequence Length = 190867 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 cgcagtgcgtcttcgccgccg 173 ||||||||||||||||||||| Sbjct: 183415 cgcagtgcgtcttcgccgccg 183435
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 208 ctccgactacagcgccttcttctac 232 ||||||||||| ||||||||||||| Sbjct: 3053729 ctccgactacaccgccttcttctac 3053753
>gb|AF041004.1|HSPPLG6 Homo sapiens periplakin (PPL) gene, exons 10 through 22 and complete cds Length = 15932 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 cgttctcaggagcctgtgcct 398 ||||||||||||||||||||| Sbjct: 1650 cgttctcaggagcctgtgcct 1670
>gb|AC027687.7| Homo sapiens chromosome 16 clone RP11-61L4, complete sequence Length = 169166 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 378 cgttctcaggagcctgtgcct 398 ||||||||||||||||||||| Sbjct: 87763 cgttctcaggagcctgtgcct 87743 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 128,748,569 Number of extensions: 6709424 Number of successful extensions: 124105 Number of sequences better than 10.0: 16 Number of HSP's gapped: 124105 Number of HSP's successfully gapped: 16 Length of query: 858 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 836 Effective length of database: 18,508,616,841 Effective search space: 15473203679076 Effective search space used: 15473203679076 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)