ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf28o08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB077379.1| Leymus racemosus DNA, repeat sequence, clone:pLrHind-2 Length = 158 Score = 54.0 bits (27), Expect = 0.001 Identities = 42/47 (89%) Strand = Plus / Minus Query: 705 tggtcaccgcgtggccacggcagtgccacgctccactcgctgccaaa 751 ||||||||||||||||| |||| |||||||| | ||||| ||||||| Sbjct: 73 tggtcaccgcgtggccatggcattgccacgccctactcgatgccaaa 27
>gb|AC146790.16| Medicago truncatula clone mth2-123b21, complete sequence Length = 114449 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1026 tagataaaaatggcccaaatt 1046 ||||||||||||||||||||| Sbjct: 65649 tagataaaaatggcccaaatt 65629
>gb|AC163038.5| Mus musculus BAC clone RP23-180A14 from chromosome 13, complete sequence Length = 213865 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 942 acaaacaaacaagtttagggg 962 ||||||||||||||||||||| Sbjct: 37575 acaaacaaacaagtttagggg 37595
>gb|AC115800.13| Mus musculus chromosome 8, clone RP23-407E22, complete sequence Length = 228513 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 448 gggtgccttcaaatagctcggggaa 472 ||||||||||||||||||| ||||| Sbjct: 198664 gggtgccttcaaatagctctgggaa 198640
>gb|AC165251.2| Mus musculus BAC clone RP24-75C16 from chromosome 13, complete sequence Length = 207075 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 942 acaaacaaacaagtttagggg 962 ||||||||||||||||||||| Sbjct: 16336 acaaacaaacaagtttagggg 16316
>emb|CR855865.5| Zebrafish DNA sequence from clone DKEY-267L2 in linkage group 3, complete sequence Length = 149895 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 gctcatcttcttcctcccgct 58 ||||||||||||||||||||| Sbjct: 9758 gctcatcttcttcctcccgct 9778
>emb|AL035088.1|HS3D11 Human DNA sequence from clone RP1-3D11 on chromosome Xq22.1-23 Contains a pseudogene similar to part of keratin 18 (K18, CYK18) (KRT18), a novel gene, the 5' end of a novel gene and two CpG islands, complete sequence Length = 146358 Score = 42.1 bits (21), Expect = 4.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 18 tctctctcttccatcccctggctcatctt 46 |||||||||||| |||||| ||||||||| Sbjct: 53714 tctctctcttccttcccctagctcatctt 53742
>gb|AC091932.2| Homo sapiens chromosome 5 clone RP11-315A16, complete sequence Length = 167799 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1088 attttcataccattttcataa 1108 ||||||||||||||||||||| Sbjct: 71614 attttcataccattttcataa 71594
>gb|AC024951.31| Homo sapiens chromosome 8 clone RP11-104C10, complete sequence Length = 170023 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 883 cctgatctctgcctgaggttgacca 907 ||||||||| ||||||||||||||| Sbjct: 41113 cctgatctcggcctgaggttgacca 41089
>emb|AL604064.10| Zebrafish DNA sequence from clone BUSM1-180G5 in linkage group 3, complete sequence Length = 136041 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 gctcatcttcttcctcccgct 58 ||||||||||||||||||||| Sbjct: 7140 gctcatcttcttcctcccgct 7120
>ref|NM_001005573.1| Danio rerio transmembrane and ubiquitin-like domain containing 2 (tmub2), mRNA Length = 1040 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 gctcatcttcttcctcccgct 58 ||||||||||||||||||||| Sbjct: 506 gctcatcttcttcctcccgct 486
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 cgaggggaagggcgaggaggt 423 ||||||||||||||||||||| Sbjct: 370125 cgaggggaagggcgaggaggt 370145
>gb|AC104417.14| Homo sapiens chromosome 8, clone RP11-953B20, complete sequence Length = 186063 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 883 cctgatctctgcctgaggttgacca 907 ||||||||| ||||||||||||||| Sbjct: 94861 cctgatctcggcctgaggttgacca 94837
>gb|AC002122.1|AC002122 Human unknown clone GS1-293J4 from 5p15.2, complete sequence Length = 79931 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1088 attttcataccattttcataa 1108 ||||||||||||||||||||| Sbjct: 42840 attttcataccattttcataa 42860
>gb|AC114598.9| Mus musculus chromosome 8, clone RP23-301G13, complete sequence Length = 211410 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 448 gggtgccttcaaatagctcggggaa 472 ||||||||||||||||||| ||||| Sbjct: 199573 gggtgccttcaaatagctctgggaa 199597
>emb|AL929379.14| Zebrafish DNA sequence from clone CH211-156H6, complete sequence Length = 167232 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 932 caaatgcagcacaaacaaaca 952 ||||||||||||||||||||| Sbjct: 12334 caaatgcagcacaaacaaaca 12314 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 186,119,990 Number of extensions: 14813341 Number of successful extensions: 249028 Number of sequences better than 10.0: 16 Number of HSP's gapped: 249028 Number of HSP's successfully gapped: 16 Length of query: 1143 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1120 Effective length of database: 18,503,978,556 Effective search space: 20724455982720 Effective search space used: 20724455982720 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
